{"id":"https://openalex.org/W2614238182","doi":"https://doi.org/10.7916/d86m3chh","title":"Quantifying recent variation and relatedness in human populations","display_name":"Quantifying recent variation and relatedness in human populations","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2614238182","doi":"https://doi.org/10.7916/d86m3chh","mag":"2614238182"},"language":"en","primary_location":{"id":"pmh:oai:academiccommons.columbia.edu:10.7916/D86M3CHH","is_oa":false,"landing_page_url":"https://doi.org/10.7916/D86M3CHH","pdf_url":null,"source":{"id":"https://openalex.org/S4306402601","display_name":"Columbia Academic Commons (Columbia University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I78577930","host_organization_name":"Columbia University","host_organization_lineage":["https://openalex.org/I78577930"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Theses"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.7916/d86m3chh","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044886059","display_name":"Alexander Gusev","orcid":"https://orcid.org/0000-0002-7980-4620"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Gusev, Alexander","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5044886059"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.32382536,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T14393","display_name":"Health, Environment, Cognitive Aging","score":0.32749998569488525,"subfield":{"id":"https://openalex.org/subfields/2307","display_name":"Health, Toxicology and Mutagenesis"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T14393","display_name":"Health, Environment, Cognitive Aging","score":0.32749998569488525,"subfield":{"id":"https://openalex.org/subfields/2307","display_name":"Health, Toxicology and Mutagenesis"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.29490000009536743,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/variation","display_name":"Variation (astronomy)","score":0.6933746337890625},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3287905752658844}],"concepts":[{"id":"https://openalex.org/C2778334786","wikidata":"https://www.wikidata.org/wiki/Q1586270","display_name":"Variation (astronomy)","level":2,"score":0.6933746337890625},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3287905752658844},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C44870925","wikidata":"https://www.wikidata.org/wiki/Q37547","display_name":"Astrophysics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:academiccommons.columbia.edu:10.7916/D86M3CHH","is_oa":false,"landing_page_url":"https://doi.org/10.7916/D86M3CHH","pdf_url":null,"source":{"id":"https://openalex.org/S4306402601","display_name":"Columbia Academic Commons (Columbia University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I78577930","host_organization_name":"Columbia University","host_organization_lineage":["https://openalex.org/I78577930"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Theses"},{"id":"mag:2614238182","is_oa":false,"landing_page_url":"https://academiccommons.columbia.edu/doi/10.7916/D83N29HQ/download","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null},{"id":"doi:10.7916/d86m3chh","is_oa":true,"landing_page_url":"https://doi.org/10.7916/d86m3chh","pdf_url":null,"source":{"id":"https://openalex.org/S4306402601","display_name":"Columbia Academic Commons (Columbia University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I78577930","host_organization_name":"Columbia University","host_organization_lineage":["https://openalex.org/I78577930"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.7916/d86m3chh","is_oa":true,"landing_page_url":"https://doi.org/10.7916/d86m3chh","pdf_url":null,"source":{"id":"https://openalex.org/S4306402601","display_name":"Columbia Academic Commons (Columbia University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I78577930","host_organization_name":"Columbia University","host_organization_lineage":["https://openalex.org/I78577930"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3021707350","https://openalex.org/W563597572","https://openalex.org/W2141881593","https://openalex.org/W2970252303","https://openalex.org/W3095902754","https://openalex.org/W3021309782","https://openalex.org/W2502554268","https://openalex.org/W2346617092","https://openalex.org/W3110278164","https://openalex.org/W2212721905","https://openalex.org/W2316250783","https://openalex.org/W337758473","https://openalex.org/W240956583","https://openalex.org/W2061868356","https://openalex.org/W2734677047","https://openalex.org/W2896219178","https://openalex.org/W2321458096","https://openalex.org/W2503029269","https://openalex.org/W1663541164","https://openalex.org/W2037156223"],"abstract_inverted_index":{"Advances":[0],"in":[1,64,87,123,147],"the":[2,42,58,74,107,134,163,174,186,219,324,333,381,438,459],"genetic":[3,60,111],"analysis":[4,97,199,429],"of":[5,12,25,30,45,53,98,109,120,137,159,180,200,214,285,312,335,360,362,452,461],"humans":[6],"have":[7],"revealed":[8],"a":[9,38,71,148,209,228,239,433],"surprising":[10],"abundance":[11],"local":[13],"relatedness":[14],"between":[15],"purportedly":[16],"unrelated":[17],"individuals.":[18,370],"Where":[19],"common":[20,39],"mutations":[21],"classically":[22],"inform":[23],"us":[24],"ancient":[26],"relationships,":[27],"such":[28],"segments":[29,75,122,140,307,330,387],"pairwise":[31,139,375],"identical":[32],"by":[33,183,252,319],"descent":[34],"(IBD)":[35],"sharing":[36],"from":[37,141,366,432,444],"ancestor":[40],"are":[41,392],"observable":[43],"traces":[44],"recent":[46,110],"inter-mating.":[47],"Combining":[48],"these":[49,215,455],"two":[50,216,301],"distinct":[51],"sources":[52],"information":[54],"can":[55,76,132,206,291,348],"help":[56,86],"disentangle":[57],"complex":[59,316],"structure":[61],"and":[62,85,101,106,257,277,315,357,398,463],"flux":[63],"human":[65],"populations.":[66,236],"When":[67],"considered":[68],"together":[69],"with":[70,197,234,244],"heritable":[72],"trait,":[73],"also":[77],"be":[78,395,416],"used":[79],"to":[80,104,143,177,189,241,273,282,308,331,372,394,415,441],"interrogate":[81],"unascertained":[82],"rare":[83,313,422],"variation":[84,314],"locating":[88],"trait-effecting":[89],"loci.":[90],"This":[91,265],"work":[92],"presents":[93],"methods":[94,166,205,270,290],"for":[95,117,295,303,337,403,420],"comprehensive":[96],"population-wide":[99],"IBD":[100,121,306,329,376,389],"explores":[102],"applications":[103],"disease":[105,408,442,464],"understanding":[108,311],"variation.":[112,405],"We":[113,151,193,237],"propose":[114,238],"several":[115,157,296],"strategies":[116],"efficient":[118,280],"detection":[119],"population":[124,339,365,462],"genotype":[125,249],"data.":[126],"Our":[127],"novel":[128,450,456],"seed-based":[129],"algorithm,":[130,326,383],"GERMLINE,":[131],"reduce":[133],"computational":[135],"burden":[136],"finding":[138],"quadratic":[142],"nearly":[144],"linear":[145],"time":[146],"general":[149,434],"population.":[150],"demonstrate":[152],"that":[153,230,247,345,391],"this":[154,242,412],"approach":[155,414],"is":[156,218,278],"orders":[158],"magnitude":[160],"faster":[161],"than":[162,425],"available":[164,269,305],"all-pairs":[165],"while":[167],"maintaining":[168],"higher":[169],"accuracy.":[170],"Next,":[171],"we":[172,299,322,343,379,410,447],"extended":[173],"GERMLINE":[175],"technique":[176],"process":[178,208],"cohorts":[179],"unlimited":[181],"size":[182],"adaptively":[184],"adjusting":[185],"search":[187],"mechanism":[188],"meet":[190],"resource":[191],"restrictions.":[192],"confirm":[194],"its":[195],"effectiveness":[196],"an":[198,245,363],"50,000":[201],"individuals":[202,336],"where":[203,288],"contemporary":[204],"only":[207,292],"few":[210],"thousand.":[211],"One":[212],"draw-back":[213],"algorithms":[217,302],"dependence":[220],"on":[221,263],"phased":[222],"haplotype":[223],"data":[224,250,276],"as":[225,401],"input":[226],"-":[227],"constraint":[229],"becomes":[231],"more":[232,418],"difficult":[233],"large":[235],"solution":[240,266],"problem":[243],"algorithm":[246,440],"analyzes":[248],"directly":[251],"exploring":[253],"all":[254],"potential":[255],"haplotypes":[256,294],"scoring":[258],"each":[259],"putative":[260],"segment":[261,377],"based":[262],"linkage-disequilibrium.":[264],"significantly":[267,349],"outperforms":[268],"when":[271],"applied":[272],"full":[274],"sequence":[275],"computationally":[279],"enough":[281],"analyze":[283],"thousands":[284],"sequenced":[286],"genomes":[287],"current":[289],"determine":[293],"hundred.":[297],"Secondly,":[298],"outline":[300],"analyzing":[304],"increase":[309,350],"our":[310],"disease.":[317],"Motivated":[318],"whole-genome":[320],"sequencing,":[321],"present":[323],"INFOSTIP":[325,346],"which":[327,384],"uses":[328,399],"optimize":[332],"selection":[334,347],"complete":[338],"ascertainment.":[340],"In":[341,406],"simulations,":[342],"show":[344,411],"variant":[351],"inference":[352,359],"accuracy":[353],"over":[354],"random":[355],"sampling":[356],"posit":[358],"60%":[361],"isolated":[364],"1%":[367],"optimally":[368],"selected":[369],"Seeking":[371],"move":[373],"beyond":[374],"analysis,":[378],"describe":[380],"DASH":[382,439],"groups":[385],"shared":[386],"into":[388],"\"clusters\"":[390],"likely":[393],"commonly":[396],"co-inherited":[397],"them":[400],"proxies":[402],"un-typed":[404],"simulated":[407],"studies,":[409],"reference-free":[413],"much":[417],"powerful":[419],"detecting":[421],"causal":[423],"variants":[424],"either":[426],"traditional":[427],"single-marker":[428],"or":[430],"imputation":[431],"reference":[435],"panel.":[436],"Applying":[437],"traits":[443],"different":[445],"populations,":[446],"identify":[448],"multiple":[449],"loci":[451],"association.":[453],"Together,":[454],"techniques":[457],"integrate":[458],"power":[460],"genetics.":[465]},"counts_by_year":[],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2025-10-10T00:00:00"}
