{"id":"https://openalex.org/W2947309180","doi":"https://doi.org/10.7916/d8-1est-dh56","title":"Phenotyping Endometriosis from Observational Health Data","display_name":"Phenotyping Endometriosis from Observational Health Data","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2947309180","doi":"https://doi.org/10.7916/d8-1est-dh56","mag":"2947309180"},"language":"en","primary_location":{"id":"mag:2947309180","is_oa":false,"landing_page_url":"https://academiccommons.columbia.edu/doi/10.7916/d8-1est-dh56","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.7916/d8-1est-dh56","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069689233","display_name":"Mollie M. McKillop","orcid":"https://orcid.org/0000-0002-4805-5989"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"McKillop, Mollie","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5069689233"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.07452556,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10935","display_name":"Endometriosis Research and Treatment","score":0.871999979019165,"subfield":{"id":"https://openalex.org/subfields/2743","display_name":"Reproductive Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10935","display_name":"Endometriosis Research and Treatment","score":0.871999979019165,"subfield":{"id":"https://openalex.org/subfields/2743","display_name":"Reproductive Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/observational-study","display_name":"Observational study","score":0.6943992376327515},{"id":"https://openalex.org/keywords/endometriosis","display_name":"Endometriosis","score":0.4324369430541992},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3715756833553314},{"id":"https://openalex.org/keywords/gynecology","display_name":"Gynecology","score":0.1804526150226593},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.12114676833152771}],"concepts":[{"id":"https://openalex.org/C23131810","wikidata":"https://www.wikidata.org/wiki/Q818574","display_name":"Observational study","level":2,"score":0.6943992376327515},{"id":"https://openalex.org/C2779522080","wikidata":"https://www.wikidata.org/wiki/Q205764","display_name":"Endometriosis","level":2,"score":0.4324369430541992},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3715756833553314},{"id":"https://openalex.org/C29456083","wikidata":"https://www.wikidata.org/wiki/Q1221899","display_name":"Gynecology","level":1,"score":0.1804526150226593},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.12114676833152771}],"mesh":[],"locations_count":2,"locations":[{"id":"mag:2947309180","is_oa":false,"landing_page_url":"https://academiccommons.columbia.edu/doi/10.7916/d8-1est-dh56","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null},{"id":"doi:10.7916/d8-1est-dh56","is_oa":true,"landing_page_url":"https://doi.org/10.7916/d8-1est-dh56","pdf_url":null,"source":{"id":"https://openalex.org/S4306402601","display_name":"Columbia Academic Commons (Columbia University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I78577930","host_organization_name":"Columbia University","host_organization_lineage":["https://openalex.org/I78577930"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.7916/d8-1est-dh56","is_oa":true,"landing_page_url":"https://doi.org/10.7916/d8-1est-dh56","pdf_url":null,"source":{"id":"https://openalex.org/S4306402601","display_name":"Columbia Academic Commons (Columbia University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I78577930","host_organization_name":"Columbia University","host_organization_lineage":["https://openalex.org/I78577930"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[{"score":0.6800000071525574,"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"The":[0,356],"signs":[1,29,211],"and":[2,30,81,108,163,169,212,278,296,325,347,366,379,387,397,422,433,445,478,497,499,533,576],"symptoms":[3,18,31,213],"of":[4,13,17,44,61,66,78,84,97,137,186,210,214,239,260,394,440,443,450,459,489,525,566,571,581],"many":[5],"diseases":[6,99],"remain":[7],"poorly":[8],"characterized.":[9],"For":[10,119],"these":[11,331],"types":[12],"conditions,":[14],"the":[15,28,34,45,62,67,75,79,82,125,126,135,178,187,215,247,276,299,310,345,372,395,407,460,490,526,540,549,564],"constellation":[16],"experienced":[19],"by":[20,503],"patients":[21,327,367,429,475,507],"are":[22,27,255,316,368,402,529],"not":[23],"adequately":[24],"described,":[25],"nor":[26],"specific":[32],"to":[33,140,144,177,314,340,344,348,370,462,520],"condition":[35,116,122,188,541],"well-defined.":[36],"These":[37],"features":[38],"define":[39],"an":[40,232],"enigmatic":[41,49,98,240],"disease.":[42],"One":[43],"most":[46],"prevalent":[47,121],"yet":[48],"conditions":[50,241],"today":[51],"is":[52,117,129,175,273,338,358,452,468,500,537],"endometriosis,":[53],"described":[54],"as":[55,196,385],"when":[56],"endometrial-like":[57],"cells":[58],"grow":[59],"outside":[60],"uterus.":[63],"Largely":[64],"because":[65],"wide,":[68],"unexplained":[69],"variation":[70],"in":[71,93],"patient":[72,179,354,413],"symptoms,":[73],"beyond":[74],"surgical":[76],"definition":[77,426,551],"disease,":[80],"lack":[83],"noninvasive":[85],"diagnostic":[86],"biomarkers,":[87],"there":[88],"exists":[89],"a":[90,115,120,183,207,218,267,305,333,353,362,419,437,457,543,557,579],"significant":[91],"delay":[92],"diagnosis.":[94,111],"Better":[95],"characterization":[96,185,458,488,552],"like":[100,158,242],"endometriosis":[101,271,290,315,337,424,474,506,572],"should":[102,264],"lead":[103],"us":[104],"towards":[105],"more":[106,219],"accurate":[107],"earlier":[109,303,554],"disease":[110,216,237,300,311,350,396,400,461,466,491,527,555],"In":[112],"informatics,":[113],"characterizing":[114],"phenotyping.":[118,191],"for":[123,152,190,236,270,275,336,391,398,415,427,553,568],"which":[124],"symptomatic":[127],"experience":[128,180],"highly":[130],"heterogeneous,":[131],"this":[132,147,455,515],"process":[133],"involves":[134],"use":[136,371],"data-driven":[138],"methods":[139,286,390],"describe":[141],"group-specific":[142],"patterns":[143],"better":[145],"explain":[146],"heterogeneity.":[148],"Traditional":[149],"data":[150,157,167,171,193,199,225,234,257,323,378,382,435],"sources":[151,194,258,324],"phenotyping":[153,224,238,280,351,381],"include":[154],"observational":[155,321,582],"health":[156,160,198,228,322,583],"electronic":[159],"records":[161,414],"(EHR)":[162],"administrative":[164],"claims.":[165],"Collecting":[166],"longitudinally":[168],"designing":[170],"collection":[172],"so":[173],"it":[174],"relevant":[176,313],"may":[181,203],"provide":[182],"complementary":[184],"useful":[189],"Alternative":[192],"such":[195,384],"patient-generated":[197],"from":[200,293,318,326,430,508,514,542],"self-tracking":[201,268,294,334,373,377,482],"devices":[202],"elucidate,":[204],"over":[205,411,471,504,509],"time,":[206],"wider":[208],"range":[209],"at":[217,281,291,492],"granular":[220],"level":[221],"than":[222],"traditional":[223,256,320,380],"sources.":[226],"Patient-generated":[227],"data,":[229,295],"however,":[230],"remains":[231],"unexplored":[233],"source":[235],"endometriosis.":[243],"This":[244,404],"thesis":[245,405],"explores":[246],"following":[248],"research":[249],"questions:":[250],"1)":[251,409],"To":[252],"what":[253,536],"extent":[254],"representative":[259],"endometriosis?":[261],"2)":[262,480],"How":[263],"researchers":[265],"design":[266],"app":[269,335,357,483,516],"that":[272,485,528],"engaging":[274,343],"user":[277,346],"supports":[279,486],"scale?":[282],"3)":[283,512],"What":[284],"computational":[285,389],"can":[287,298],"help":[288,463],"phenotype":[289],"scale":[292,493],"4)":[297,547],"be":[301,341],"detected":[302],"with":[304,436,464,535,561],"validated":[306],"EHR":[307,434],"phenotype?":[308],"First,":[309],"dimensions":[312],"elicited":[317],"both":[319,342,431],"directly.":[328],"Second,":[329],"using":[330,361,376,470],"dimensions,":[332],"designed":[339,496],"facilitate":[349],"across":[352,476,578],"population.":[355],"then":[359],"developed":[360,498],"standard":[363],"software":[364],"framework,":[365],"recruited":[369],"app.":[374],"Third,":[375],"sources,":[383],"claims":[386,432],"EHRs,":[388],"identifying":[392],"subtypes":[393,524],"early":[399,465,569],"detection":[401,467],"explored.":[403],"contributes":[406],"following:":[408],"Using":[410,454],"1,400":[412],"manual":[416],"chart":[417],"review,":[418],"validated,":[420],"reproducible,":[421],"portable":[423],"cohort":[425,550],"selecting":[428],"sensitivity":[438],"(recall)":[439],"70%,":[441],"specificity":[442],"93%,":[444],"positive":[446],"predictive":[447],"value":[448],"(precision)":[449],"85%":[451],"developed.":[453],"definition,":[456],"elucidated":[469],"two":[472],"million":[473],"institutions":[477],"settings.":[479],"A":[481],"(Phendo)":[484],"further":[487],"has":[494,517,573],"been":[495,518,574],"currently":[501],"used":[502,519],"6,000":[505],"70":[510],"countries.":[511],"Data":[513],"identify":[521],"three":[522],"novel":[523],"clinically":[530],"meaningful,":[531],"interpretable,":[532],"correlate":[534],"known":[538],"about":[539],"gold-standard":[544],"clinical":[545],"survey.":[546],"Leveraging":[548],"detection,":[556],"well-performing":[558],"prediction":[559],"model,":[560],"area":[562],"under":[563],"curve":[565],"68.6%,":[567],"identification":[570],"trained":[575],"tested":[577],"network":[580],"databases.":[584]},"counts_by_year":[],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2025-10-10T00:00:00"}
