{"id":"https://openalex.org/W2130396979","doi":"https://doi.org/10.7551/978-0-262-31709-2-ch015","title":"Bladder Cancer Specific Pathway Interaction Networks","display_name":"Bladder Cancer Specific Pathway Interaction Networks","publication_year":2013,"publication_date":"2013-08-29","ids":{"openalex":"https://openalex.org/W2130396979","doi":"https://doi.org/10.7551/978-0-262-31709-2-ch015","mag":"2130396979"},"language":"en","primary_location":{"id":"doi:10.7551/978-0-262-31709-2-ch015","is_oa":true,"landing_page_url":"https://doi.org/10.7551/978-0-262-31709-2-ch015","pdf_url":"http://www.mitpressjournals.org/doi/pdf/10.1162/978-0-262-31709-2-ch015","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Artificial Life, ECAL 2013","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"http://www.mitpressjournals.org/doi/pdf/10.1162/978-0-262-31709-2-ch015","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033512493","display_name":"Qinxin Pan","orcid":null},"institutions":[{"id":"https://openalex.org/I107672454","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22","country_code":"US","type":"education","lineage":["https://openalex.org/I107672454"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Qinxin Pan","raw_affiliation_strings":["Dartmouth College, Hanover, United States"],"affiliations":[{"raw_affiliation_string":"Dartmouth College, Hanover, United States","institution_ids":["https://openalex.org/I107672454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101965823","display_name":"Ting Hu","orcid":null},"institutions":[{"id":"https://openalex.org/I107672454","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22","country_code":"US","type":"education","lineage":["https://openalex.org/I107672454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ting Hu","raw_affiliation_strings":["Dartmouth College, Hanover, United States"],"affiliations":[{"raw_affiliation_string":"Dartmouth College, Hanover, United States","institution_ids":["https://openalex.org/I107672454"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009454568","display_name":"Angeline S. Andrew","orcid":"https://orcid.org/0000-0002-3731-5300"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Angeline Andrew","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5033512493"],"corresponding_institution_ids":["https://openalex.org/I107672454"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.10687037,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"94","last_page":"101"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9846000075340271,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9760000109672546,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.5384383797645569},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5286754965782166},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.21948301792144775},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.12253624200820923}],"concepts":[{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.5384383797645569},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5286754965782166},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.21948301792144775},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.12253624200820923}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.7551/978-0-262-31709-2-ch015","is_oa":true,"landing_page_url":"https://doi.org/10.7551/978-0-262-31709-2-ch015","pdf_url":"http://www.mitpressjournals.org/doi/pdf/10.1162/978-0-262-31709-2-ch015","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Artificial Life, ECAL 2013","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.646.1864","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.646.1864","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://mitpress.mit.edu/sites/default/files/titles/content/ecal13/978-0-262-31709-2-ch015.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.7551/978-0-262-31709-2-ch015","is_oa":true,"landing_page_url":"https://doi.org/10.7551/978-0-262-31709-2-ch015","pdf_url":"http://www.mitpressjournals.org/doi/pdf/10.1162/978-0-262-31709-2-ch015","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Artificial Life, ECAL 2013","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2130396979.pdf","grobid_xml":"https://content.openalex.org/works/W2130396979.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1971937094","https://openalex.org/W1974849032","https://openalex.org/W1988263223","https://openalex.org/W2013520054","https://openalex.org/W2018934112","https://openalex.org/W2025471227","https://openalex.org/W2030628077","https://openalex.org/W2031187412","https://openalex.org/W2066254965","https://openalex.org/W2066787077","https://openalex.org/W2100025044","https://openalex.org/W2100526049","https://openalex.org/W2112811019","https://openalex.org/W2114830914","https://openalex.org/W2130790725","https://openalex.org/W2147566730","https://openalex.org/W2150318080","https://openalex.org/W2150926065","https://openalex.org/W2152285853","https://openalex.org/W2159460045"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2130043461","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"With":[0],"the":[1,16,22,46,118,126],"development":[2],"of":[3,25,120],"high-throughput":[4,19,60],"technologies,":[5],"mon-itoring":[6],"biological":[7,48],"systems":[8],"comprehensively":[9],"has":[10,53],"became":[11,54],"fea-sible":[12],"and":[13,112],"affordable.":[14],"However,":[15],"transition":[17],"from":[18],"data":[20],"to":[21],"underlying":[23,47],"biology":[24],"various":[26],"pheno-types":[27],"remains":[28],"challenging.":[29],"Pathway":[30],"analysis":[31,52,65],"identifies":[32],"bio-logical":[33],"processes":[34],"that":[35,73,96,130],"are":[36,67,97],"associated":[37,98],"with":[38,81,99],"a":[39,55,70,85],"particular":[40],"pheno-type,":[41],"which":[42],"provides":[43],"insights":[44],"into":[45],"mechanisms.":[49],"Therefore,":[50],"pathway":[51,64,94],"pop-ular":[56],"tool":[57],"for":[58],"analyzing":[59,117],"data.":[61],"Most":[62],"existing":[63],"methods":[66],"based":[68,108],"on":[69,93,109],"simple":[71],"assumption":[72],"pathways":[74],"act":[75],"in":[76,84],"isolation":[77],"whereas":[78],"they":[79],"cooperate":[80],"each":[82],"other":[83],"complex":[86],"manner.":[87],"In":[88],"this":[89],"study,":[90],"we":[91,124],"focus":[92],"interactions":[95,111],"bladder":[100],"can-cer":[101],"risk.":[102],"We":[103],"identify":[104],"disease-specific":[105],"pathway-pathway":[106],"in-teractions":[107],"SNP-SNP":[110],"gene-gene":[113],"co-expression":[114],"relationships.":[115],"By":[116],"structure":[119],"path-way":[121],"interaction":[122],"networks,":[123],"highlight":[125],"\u201ccentral":[127],"\u201d":[128],"path-ways":[129],"should":[131],"be":[132],"further":[133],"studied.":[134]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
