{"id":"https://openalex.org/W1993801217","doi":"https://doi.org/10.7551/978-0-262-31050-5-ch058","title":"Modeling Scalable Pattern Generation in DNA Reaction Networks","display_name":"Modeling Scalable Pattern Generation in DNA Reaction Networks","publication_year":2012,"publication_date":"2012-07-02","ids":{"openalex":"https://openalex.org/W1993801217","doi":"https://doi.org/10.7551/978-0-262-31050-5-ch058","mag":"1993801217"},"language":"en","primary_location":{"id":"doi:10.7551/978-0-262-31050-5-ch058","is_oa":true,"landing_page_url":"https://doi.org/10.7551/978-0-262-31050-5-ch058","pdf_url":"http://www.mitpressjournals.org/doi/pdf/10.1162/978-0-262-31050-5-ch058","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial Life 13","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"http://www.mitpressjournals.org/doi/pdf/10.1162/978-0-262-31050-5-ch058","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025306342","display_name":"Peter B. Allen","orcid":"https://orcid.org/0000-0003-2461-3285"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Peter B. Allen","raw_affiliation_strings":["University of Texas at Austin#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Texas at Austin#TAB#","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100329841","display_name":"Xi Chen","orcid":"https://orcid.org/0000-0001-6394-9967"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xi Chen","raw_affiliation_strings":["University of Texas at Austin#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Texas at Austin#TAB#","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014078374","display_name":"Zack B. Simpson","orcid":null},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zack B. Simpson","raw_affiliation_strings":["University of Texas at Austin#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Texas at Austin#TAB#","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089627980","display_name":"Andrew D. Ellington","orcid":"https://orcid.org/0000-0001-6246-5338"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew D. Ellington","raw_affiliation_strings":["University of Texas at Austin, Austin, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Texas at Austin, Austin, USA","institution_ids":["https://openalex.org/I86519309"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5025306342"],"corresponding_institution_ids":["https://openalex.org/I86519309"],"apc_list":null,"apc_paid":null,"fwci":0.4031,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.61162873,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"441","last_page":"448"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7075464129447937},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6171974539756775},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.4170866906642914},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3546827435493469},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1304909586906433},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09891581535339355}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7075464129447937},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6171974539756775},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.4170866906642914},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3546827435493469},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1304909586906433},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09891581535339355},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.7551/978-0-262-31050-5-ch058","is_oa":true,"landing_page_url":"https://doi.org/10.7551/978-0-262-31050-5-ch058","pdf_url":"http://www.mitpressjournals.org/doi/pdf/10.1162/978-0-262-31050-5-ch058","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial Life 13","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.7551/978-0-262-31050-5-ch058","is_oa":true,"landing_page_url":"https://doi.org/10.7551/978-0-262-31050-5-ch058","pdf_url":"http://www.mitpressjournals.org/doi/pdf/10.1162/978-0-262-31050-5-ch058","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial Life 13","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W1982914007","https://openalex.org/W3212136884","https://openalex.org/W2159583675","https://openalex.org/W1852113167","https://openalex.org/W1493858311","https://openalex.org/W1824242903","https://openalex.org/W2155470929","https://openalex.org/W2394465510","https://openalex.org/W2111125783"],"abstract_inverted_index":{"We":[0,75],"have":[1],"developed":[2],"a":[3,34,66],"theoretical":[4],"framework":[5],"for":[6],"developing":[7],"patterns":[8],"in":[9,19,27,85],"multiple":[10],"dimensions":[11],"using":[12],"controllable":[13],"diffusion":[14,61],"and":[15,37,55],"designed":[16,49,53],"reactions":[17,26,46],"implemented":[18],"DNA.":[20],"This":[21],"includes":[22],"so-called":[23],"strand":[24],"displacement":[25],"which":[28],"one":[29],"single-stranded":[30,40],"DNA":[31,36],"hybridizes":[32],"to":[33,50,65],"hemi-duplex":[35],"displaces":[38],"another":[39],"DNA,":[41,69],"reversibly":[42],"or":[43],"irreversibly.":[44],"These":[45],"can":[47,71],"be":[48],"proceed":[51],"with":[52,78],"rate":[54],"molecular":[56],"specificity.":[57],"By":[58],"also":[59],"controlling":[60],"by":[62],"partial":[63],"complementarity":[64],"stationary,":[67],"cross-linked":[68],"we":[70],"generate":[72],"predictable":[73,83],"patterns.":[74],"demonstrate":[76],"this":[77],"several":[79],"simulations":[80],"showing":[81],"deterministic,":[82],"shapes":[84],"space.":[86]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-05-20T08:49:12.498775","created_date":"2025-10-10T00:00:00"}
