{"id":"https://openalex.org/W2948585573","doi":"https://doi.org/10.7287/peerj.preprints.27771v1","title":"A new algorithm for band detection and pattern extraction on pulsed-field gel electrophoresis images","display_name":"A new algorithm for band detection and pattern extraction on pulsed-field gel electrophoresis images","publication_year":2019,"publication_date":"2019-06-02","ids":{"openalex":"https://openalex.org/W2948585573","doi":"https://doi.org/10.7287/peerj.preprints.27771v1","mag":"2948585573"},"language":"en","primary_location":{"id":"doi:10.7287/peerj.preprints.27771v1","is_oa":true,"landing_page_url":"https://doi.org/10.7287/peerj.preprints.27771v1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"posted-content"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.7287/peerj.preprints.27771v1","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037365769","display_name":"Mohammad Rezaei","orcid":"https://orcid.org/0000-0002-2985-008X"},"institutions":[{"id":"https://openalex.org/I39642139","display_name":"Kermanshah University of Medical Sciences","ror":"https://ror.org/05vspf741","country_code":"IR","type":"education","lineage":["https://openalex.org/I39642139"]}],"countries":["IR"],"is_corresponding":true,"raw_author_name":"Mohammad Rezaei","raw_affiliation_strings":["Department of Biomedical Engineering, School of Medicine, Kermanshah University of Medical Sciences, Kermanshah, Kermanshah, Iran","Sleep Disorders Research Center, Kermanshah University of Medical Sciences, Kermanshah, Kermanshah, Iran"],"raw_orcid":"https://orcid.org/0000-0002-2985-008X","affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, School of Medicine, Kermanshah University of Medical Sciences, Kermanshah, Kermanshah, Iran","institution_ids":["https://openalex.org/I39642139"]},{"raw_affiliation_string":"Sleep Disorders Research Center, Kermanshah University of Medical Sciences, Kermanshah, Kermanshah, Iran","institution_ids":["https://openalex.org/I39642139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016746077","display_name":"Naser Zohorian","orcid":null},"institutions":[{"id":"https://openalex.org/I39642139","display_name":"Kermanshah University of Medical Sciences","ror":"https://ror.org/05vspf741","country_code":"IR","type":"education","lineage":["https://openalex.org/I39642139"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Naser Zohorian","raw_affiliation_strings":["Students Research Committee, Kermanshah University of Medical Sciences, Kermanshah, Kermanshah, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Students Research Committee, Kermanshah University of Medical Sciences, Kermanshah, Kermanshah, Iran","institution_ids":["https://openalex.org/I39642139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091138718","display_name":"Nemat Soltani","orcid":null},"institutions":[{"id":"https://openalex.org/I39642139","display_name":"Kermanshah University of Medical Sciences","ror":"https://ror.org/05vspf741","country_code":"IR","type":"education","lineage":["https://openalex.org/I39642139"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Nemat Soltani","raw_affiliation_strings":["Students Research Committee, Kermanshah University of Medical Sciences, Kermanshah, Kermanshah, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Students Research Committee, Kermanshah University of Medical Sciences, Kermanshah, Kermanshah, Iran","institution_ids":["https://openalex.org/I39642139"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079008327","display_name":"Parviz Mohajeri","orcid":"https://orcid.org/0000-0002-2596-264X"},"institutions":[{"id":"https://openalex.org/I39642139","display_name":"Kermanshah University of Medical Sciences","ror":"https://ror.org/05vspf741","country_code":"IR","type":"education","lineage":["https://openalex.org/I39642139"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Parviz Mohajeri","raw_affiliation_strings":["Department of Microbiology, School of Medicine, Kermanshah University of Medical Sciences, Kermanshah, Kermanshah, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology, School of Medicine, Kermanshah University of Medical Sciences, Kermanshah, Kermanshah, Iran","institution_ids":["https://openalex.org/I39642139"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5037365769"],"corresponding_institution_ids":["https://openalex.org/I39642139"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.04428731,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9513999819755554,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9408000111579895,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6126426458358765},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6030315160751343},{"id":"https://openalex.org/keywords/filter","display_name":"Filter (signal processing)","score":0.5692751407623291},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5055544376373291},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.49770620465278625},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.47561389207839966},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.4620494246482849},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4258491098880768},{"id":"https://openalex.org/keywords/feature-extraction","display_name":"Feature extraction","score":0.4257185459136963},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.3400197923183441},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2011984884738922}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6126426458358765},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6030315160751343},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.5692751407623291},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5055544376373291},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.49770620465278625},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.47561389207839966},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4620494246482849},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4258491098880768},{"id":"https://openalex.org/C52622490","wikidata":"https://www.wikidata.org/wiki/Q1026626","display_name":"Feature extraction","level":2,"score":0.4257185459136963},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.3400197923183441},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2011984884738922},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.7287/peerj.preprints.27771v1","is_oa":true,"landing_page_url":"https://doi.org/10.7287/peerj.preprints.27771v1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.7287/peerj.preprints.27771v1","is_oa":true,"landing_page_url":"https://doi.org/10.7287/peerj.preprints.27771v1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"posted-content"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2601157893","https://openalex.org/W2373006798","https://openalex.org/W2056912418","https://openalex.org/W2112208972","https://openalex.org/W2123759770","https://openalex.org/W2033213769","https://openalex.org/W2811390910","https://openalex.org/W4312376745","https://openalex.org/W2768048376","https://openalex.org/W2082269393"],"abstract_inverted_index":{"This":[0],"paper":[1],"presents":[2],"a":[3,16,99,125,147,164],"new":[4],"approach":[5],"for":[6,12,81,89,136,167,211],"band":[7,21,39,48,58,168,197],"detection":[8,40,59,169,198],"and":[9,50,60,66,85,150],"pattern":[10,52],"recognition":[11],"molecule":[13],"types.":[14],"Although":[15],"few":[17],"studies":[18],"have":[19],"examined":[20,210],"detection,":[22],"but":[23],"there":[24],"is":[25,151],"still":[26],"no":[27],"automatic":[28],"method":[29,194],"that":[30,142,205],"can":[31,195],"perform":[32],"well":[33],"despite":[34],"the":[35,64,70,82,90,95,103,111,133,143,176,179,183,186,191,206],"high":[36],"noise.":[37,138],"The":[38,139,160],"algorithm":[41,97,145,162,208],"was":[42,130],"designed":[43,207],"in":[44,98,170,185],"two":[45],"parts,":[46],"including":[47],"location":[49],"lane":[51,77,87],"recognition.":[53],"In":[54],"order":[55],"to":[56,93,157],"improve":[57,201],"remove":[61],"undesirable":[62],"bands,":[63],"shape":[65,177],"light":[67],"intensity":[68],"of":[69,114,117,128,178,190,214],"bands":[71,184],"were":[72,79,105],"used":[73],"as":[74,132,216],"features.":[75],"One-hundred":[76],"images":[78,88,104],"selected":[80,131],"training":[83],"stage":[84,92],"350":[86],"testing":[91],"evaluate":[94],"proposed":[96,144,161],"random":[100],"fashion.":[101],"All":[102],"prepared":[106],"using":[107],"PFGE":[108],"BIORAD":[109],"at":[110],"Microbiology":[112],"Laboratory":[113],"Kermanshah":[115],"University":[116],"Medical":[118],"Sciences.":[119],"An":[120],"adaptive":[121],"median":[122],"filter":[123,126,135],"with":[124,153],"size":[127],"5x5":[129],"optimal":[134],"removing":[137],"results":[140],"showed":[141],"has":[146,163],"98.45%":[148],"accuracy":[149,166],"associated":[152],"less":[154],"errors":[155],"compared":[156],"other":[158,212],"methods.":[159],"good":[165],"pulsed-field":[171],"gel":[172],"electrophoresis":[173],"images.":[174],"Considering":[175],"peaks":[180],"caused":[181],"by":[182],"vertical":[187],"projection":[188],"profile":[189],"signal,":[192],"this":[193],"reduce":[196],"errors.":[199],"To":[200],"accuracy,":[202],"we":[203],"recommend":[204],"be":[209],"types":[213],"molecules":[215],"well.":[217]},"counts_by_year":[],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
