{"id":"https://openalex.org/W4244179015","doi":"https://doi.org/10.7287/peerj.preprints.27762v1","title":"A research institution framework for publishing open code to enable reproducible science","display_name":"A research institution framework for publishing open code to enable reproducible science","publication_year":2019,"publication_date":"2019-05-28","ids":{"openalex":"https://openalex.org/W4244179015","doi":"https://doi.org/10.7287/peerj.preprints.27762v1"},"language":"en","primary_location":{"id":"doi:10.7287/peerj.preprints.27762v1","is_oa":true,"landing_page_url":"https://doi.org/10.7287/peerj.preprints.27762v1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"posted-content"},"type":"preprint","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.7287/peerj.preprints.27762v1","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019107237","display_name":"Thomas R. Etherington","orcid":"https://orcid.org/0000-0002-3187-075X"},"institutions":[{"id":"https://openalex.org/I86609021","display_name":"Manaaki Whenua \u2013 Landcare Research","ror":"https://ror.org/02p9cyn66","country_code":"NZ","type":"government","lineage":["https://openalex.org/I4405260297","https://openalex.org/I86609021"]}],"countries":["NZ"],"is_corresponding":true,"raw_author_name":"Thomas R Etherington","raw_affiliation_strings":["Manaaki Whenua \u2013 Landcare Research, Lincoln, New Zealand"],"affiliations":[{"raw_affiliation_string":"Manaaki Whenua \u2013 Landcare Research, Lincoln, New Zealand","institution_ids":["https://openalex.org/I86609021"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033726100","display_name":"Ben Jolly","orcid":"https://orcid.org/0000-0002-8984-3201"},"institutions":[{"id":"https://openalex.org/I86609021","display_name":"Manaaki Whenua \u2013 Landcare Research","ror":"https://ror.org/02p9cyn66","country_code":"NZ","type":"government","lineage":["https://openalex.org/I4405260297","https://openalex.org/I86609021"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Ben Jolly","raw_affiliation_strings":["Manaaki Whenua \u2013 Landcare Research, Palmerston North, New Zealand"],"affiliations":[{"raw_affiliation_string":"Manaaki Whenua \u2013 Landcare Research, Palmerston North, New Zealand","institution_ids":["https://openalex.org/I86609021"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110872682","display_name":"Jan Z\u00f6rner","orcid":null},"institutions":[{"id":"https://openalex.org/I86609021","display_name":"Manaaki Whenua \u2013 Landcare Research","ror":"https://ror.org/02p9cyn66","country_code":"NZ","type":"government","lineage":["https://openalex.org/I4405260297","https://openalex.org/I86609021"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Jan Z\u00f6rner","raw_affiliation_strings":["Manaaki Whenua \u2013 Landcare Research, Wellington, New Zealand"],"affiliations":[{"raw_affiliation_string":"Manaaki Whenua \u2013 Landcare Research, Wellington, New Zealand","institution_ids":["https://openalex.org/I86609021"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056264938","display_name":"Nick Spencer","orcid":"https://orcid.org/0000-0001-7690-5592"},"institutions":[{"id":"https://openalex.org/I86609021","display_name":"Manaaki Whenua \u2013 Landcare Research","ror":"https://ror.org/02p9cyn66","country_code":"NZ","type":"government","lineage":["https://openalex.org/I4405260297","https://openalex.org/I86609021"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Nick Spencer","raw_affiliation_strings":["Manaaki Whenua \u2013 Landcare Research, Lincoln, New Zealand"],"affiliations":[{"raw_affiliation_string":"Manaaki Whenua \u2013 Landcare Research, Lincoln, New Zealand","institution_ids":["https://openalex.org/I86609021"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5019107237"],"corresponding_institution_ids":["https://openalex.org/I86609021"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.45655828,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9776999950408936,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13607","display_name":"Academic Publishing and Open Access","score":0.9358000159263611,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/publishing","display_name":"Publishing","score":0.7777022123336792},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.7167503833770752},{"id":"https://openalex.org/keywords/institution","display_name":"Institution","score":0.6658889651298523},{"id":"https://openalex.org/keywords/open-science","display_name":"Open science","score":0.6357941627502441},{"id":"https://openalex.org/keywords/scientific-publishing","display_name":"Scientific publishing","score":0.6140177249908447},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5948891639709473},{"id":"https://openalex.org/keywords/open-access-publishing","display_name":"Open access publishing","score":0.4271603226661682},{"id":"https://openalex.org/keywords/perspective","display_name":"Perspective (graphical)","score":0.42390745878219604},{"id":"https://openalex.org/keywords/intellectual-property","display_name":"Intellectual property","score":0.41048187017440796},{"id":"https://openalex.org/keywords/engineering-ethics","display_name":"Engineering ethics","score":0.3472515344619751},{"id":"https://openalex.org/keywords/political-science","display_name":"Political science","score":0.3405492305755615},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32156985998153687},{"id":"https://openalex.org/keywords/library-science","display_name":"Library science","score":0.29808855056762695},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.18727385997772217},{"id":"https://openalex.org/keywords/law","display_name":"Law","score":0.12209391593933105},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11518999934196472},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.09766435623168945},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.060836583375930786}],"concepts":[{"id":"https://openalex.org/C151719136","wikidata":"https://www.wikidata.org/wiki/Q3972943","display_name":"Publishing","level":2,"score":0.7777022123336792},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.7167503833770752},{"id":"https://openalex.org/C2780510313","wikidata":"https://www.wikidata.org/wiki/Q178706","display_name":"Institution","level":2,"score":0.6658889651298523},{"id":"https://openalex.org/C2778149293","wikidata":"https://www.wikidata.org/wiki/Q309823","display_name":"Open science","level":2,"score":0.6357941627502441},{"id":"https://openalex.org/C2984423262","wikidata":"https://www.wikidata.org/wiki/Q17327049","display_name":"Scientific publishing","level":3,"score":0.6140177249908447},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5948891639709473},{"id":"https://openalex.org/C3019393901","wikidata":"https://www.wikidata.org/wiki/Q232932","display_name":"Open access publishing","level":2,"score":0.4271603226661682},{"id":"https://openalex.org/C12713177","wikidata":"https://www.wikidata.org/wiki/Q1900281","display_name":"Perspective (graphical)","level":2,"score":0.42390745878219604},{"id":"https://openalex.org/C34974158","wikidata":"https://www.wikidata.org/wiki/Q131257","display_name":"Intellectual property","level":2,"score":0.41048187017440796},{"id":"https://openalex.org/C55587333","wikidata":"https://www.wikidata.org/wiki/Q1133029","display_name":"Engineering ethics","level":1,"score":0.3472515344619751},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.3405492305755615},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32156985998153687},{"id":"https://openalex.org/C161191863","wikidata":"https://www.wikidata.org/wiki/Q199655","display_name":"Library science","level":1,"score":0.29808855056762695},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.18727385997772217},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.12209391593933105},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11518999934196472},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.09766435623168945},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.060836583375930786},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.7287/peerj.preprints.27762v1","is_oa":true,"landing_page_url":"https://doi.org/10.7287/peerj.preprints.27762v1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.7287/peerj.preprints.27762v1","is_oa":true,"landing_page_url":"https://doi.org/10.7287/peerj.preprints.27762v1","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"posted-content"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W1998011869","https://openalex.org/W4213209802","https://openalex.org/W4298146316","https://openalex.org/W631166945","https://openalex.org/W4251493083","https://openalex.org/W1636156937","https://openalex.org/W4282843169","https://openalex.org/W4383067271","https://openalex.org/W2902956525","https://openalex.org/W4244473823"],"abstract_inverted_index":{"Reproducible":[0],"science":[1],"is":[2],"greatly":[3],"aided":[4],"by":[5],"open":[6,91],"publishing":[7,42,90],"of":[8,22,46],"scientific":[9,23,40,92],"computer":[10],"code.":[11],"There":[12],"are":[13,27],"also":[14,28],"many":[15],"institutional":[16,29],"benefits":[17],"for":[18,89],"encouraging":[19],"the":[20,44],"publication":[21],"code,":[24],"but":[25],"there":[26],"considerations":[30],"around":[31,39],"intellectual":[32],"property":[33],"and":[34,71,77],"risk.":[35],"We":[36],"discuss":[37],"questions":[38,82],"code":[41,57,62,93],"from":[43],"perspective":[45],"a":[47,85],"research":[48,86],"organisation":[49],"asking:":[50],"who":[51],"will":[52],"be":[53,58,63],"involved,":[54],"how":[55,65],"should":[56,61],"licensed,":[59],"where":[60],"published,":[64],"to":[66,80,94],"get":[67],"credit,":[68],"what":[69,72],"standards,":[70],"costs?":[73],"In":[74],"reviewing":[75],"advice":[76],"evidence":[78],"relevant":[79],"these":[81],"we":[83],"propose":[84],"institution":[87],"framework":[88],"enable":[95],"reproducible":[96],"science.":[97]},"counts_by_year":[],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
