{"id":"https://openalex.org/W1559969004","doi":"https://doi.org/10.5821/dissertation-2117-93965","title":"Meta-alignment of biological sequences","display_name":"Meta-alignment of biological sequences","publication_year":2006,"publication_date":"2006-07-21","ids":{"openalex":"https://openalex.org/W1559969004","doi":"https://doi.org/10.5821/dissertation-2117-93965","mag":"1559969004"},"language":"ca","primary_location":{"id":"doi:10.5821/dissertation-2117-93965","is_oa":true,"landing_page_url":"https://doi.org/10.5821/dissertation-2117-93965","pdf_url":"https://upcommons.upc.edu/bitstream/2117/93965/1/01Ebg01de01.pdf","source":null,"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Universitat Polit\u00e8cnica de Catalunya","raw_type":"dissertation"},"type":"dissertation","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://upcommons.upc.edu/bitstream/2117/93965/1/01Ebg01de01.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009525066","display_name":"Enrique Blanco Garc\u00eda","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Blanco Garc\u00eda, Enrique","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5009525066"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/humanities","display_name":"Humanities","score":0.8128172159194946},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.31786346435546875}],"concepts":[{"id":"https://openalex.org/C15708023","wikidata":"https://www.wikidata.org/wiki/Q80083","display_name":"Humanities","level":1,"score":0.8128172159194946},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.31786346435546875}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.5821/dissertation-2117-93965","is_oa":true,"landing_page_url":"https://doi.org/10.5821/dissertation-2117-93965","pdf_url":"https://upcommons.upc.edu/bitstream/2117/93965/1/01Ebg01de01.pdf","source":null,"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Universitat Polit\u00e8cnica de Catalunya","raw_type":"dissertation"},{"id":"pmh:oai:www.tdx.cat:10803/6654","is_oa":true,"landing_page_url":"http://www.tdx.cat/TDX-1106108-124401","pdf_url":"http://hdl.handle.net/10803/6654","source":{"id":"https://openalex.org/S4306401111","display_name":"Tesis Doctorals en Xarxa (Consorci de Serveis Universitaris de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210090028","host_organization_name":"Consorci de Serveis Universitaris de Catalunya","host_organization_lineage":["https://openalex.org/I4210090028"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"TDX (Tesis Doctorals en Xarxa)","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.5821/dissertation-2117-93965","is_oa":true,"landing_page_url":"https://doi.org/10.5821/dissertation-2117-93965","pdf_url":"https://upcommons.upc.edu/bitstream/2117/93965/1/01Ebg01de01.pdf","source":null,"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Universitat Polit\u00e8cnica de Catalunya","raw_type":"dissertation"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W1559969004.pdf"},"referenced_works_count":241,"referenced_works":["https://openalex.org/W109728598","https://openalex.org/W219914010","https://openalex.org/W297918892","https://openalex.org/W770526965","https://openalex.org/W1483073028","https://openalex.org/W1501400124","https://openalex.org/W1511730061","https://openalex.org/W1524460809","https://openalex.org/W1540446958","https://openalex.org/W1557786636","https://openalex.org/W1572339952","https://openalex.org/W1589993665","https://openalex.org/W1592614241","https://openalex.org/W1592870802","https://openalex.org/W1594542446","https://openalex.org/W1594947347","https://openalex.org/W1600463518","https://openalex.org/W1606770439","https://openalex.org/W1647671624","https://openalex.org/W1864675704","https://openalex.org/W1964155739","https://openalex.org/W1964823180","https://openalex.org/W1965280193","https://openalex.org/W1965331871","https://openalex.org/W1966094020","https://openalex.org/W1966833356","https://openalex.org/W1969803272","https://openalex.org/W1973754133","https://openalex.org/W1974326986","https://openalex.org/W1974843068","https://openalex.org/W1977279135","https://openalex.org/W1977618577","https://openalex.org/W1977828801","https://openalex.org/W1977896293","https://openalex.org/W1978486653","https://openalex.org/W1980809845","https://openalex.org/W1981974807","https://openalex.org/W1985618229","https://openalex.org/W1986841498","https://openalex.org/W1987082334","https://openalex.org/W1987122345","https://openalex.org/W1990339485","https://openalex.org/W1990413869","https://openalex.org/W1991330646","https://openalex.org/W1993780097","https://openalex.org/W1994017531","https://openalex.org/W1994458586","https://openalex.org/W1995661119","https://openalex.org/W1998300401","https://openalex.org/W1999258680","https://openalex.org/W1999510229","https://openalex.org/W1999966058","https://openalex.org/W2001785106","https://openalex.org/W2002638840","https://openalex.org/W2006101746","https://openalex.org/W2007872210","https://openalex.org/W2007888399","https://openalex.org/W2008900336","https://openalex.org/W2008907996","https://openalex.org/W2009566340","https://openalex.org/W2009818901","https://openalex.org/W2013041464","https://openalex.org/W2013368806","https://openalex.org/W2014660704","https://openalex.org/W2014837869","https://openalex.org/W2014840769","https://openalex.org/W2015292449","https://openalex.org/W2022368654","https://openalex.org/W2024913341","https://openalex.org/W2025289680","https://openalex.org/W2029195137","https://openalex.org/W2033675931","https://openalex.org/W2035239012","https://openalex.org/W2035564383","https://openalex.org/W2036056816","https://openalex.org/W2038395276","https://openalex.org/W2039680623","https://openalex.org/W2039775516","https://openalex.org/W2041076979","https://openalex.org/W2041726559","https://openalex.org/W2041877620","https://openalex.org/W2042784621","https://openalex.org/W2043834106","https://openalex.org/W2045510682","https://openalex.org/W2045583971","https://openalex.org/W2047167275","https://openalex.org/W2049114051","https://openalex.org/W2052729310","https://openalex.org/W2054698853","https://openalex.org/W2054849588","https://openalex.org/W2059325872","https://openalex.org/W2060798669","https://openalex.org/W2060951907","https://openalex.org/W2062345582","https://openalex.org/W2062872358","https://openalex.org/W2063007776","https://openalex.org/W2068011423","https://openalex.org/W2068448872","https://openalex.org/W2069448949","https://openalex.org/W2070510621","https://openalex.org/W2072265552","https://openalex.org/W2073381191","https://openalex.org/W2073727170","https://openalex.org/W2073783949","https://openalex.org/W2075363163","https://openalex.org/W2076038882","https://openalex.org/W2079659879","https://openalex.org/W2080498142","https://openalex.org/W2081530255","https://openalex.org/W2082736011","https://openalex.org/W2084620487","https://openalex.org/W2084908610","https://openalex.org/W2085161553","https://openalex.org/W2085442947","https://openalex.org/W2085538975","https://openalex.org/W2085668020","https://openalex.org/W2087064593","https://openalex.org/W2089054940","https://openalex.org/W2092006839","https://openalex.org/W2094407798","https://openalex.org/W2094519647","https://openalex.org/W2095556056","https://openalex.org/W2095824228","https://openalex.org/W2097706568","https://openalex.org/W2100990361","https://openalex.org/W2101913589","https://openalex.org/W2103017472","https://openalex.org/W2103074382","https://openalex.org/W2103465619","https://openalex.org/W2104730528","https://openalex.org/W2106882534","https://openalex.org/W2106963632","https://openalex.org/W2107246857","https://openalex.org/W2108215151","https://openalex.org/W2109363337","https://openalex.org/W2113197426","https://openalex.org/W2113992784","https://openalex.org/W2116390865","https://openalex.org/W2116688916","https://openalex.org/W2117310188","https://openalex.org/W2118300412","https://openalex.org/W2120900302","https://openalex.org/W2121923468","https://openalex.org/W2124622485","https://openalex.org/W2130063668","https://openalex.org/W2130919037","https://openalex.org/W2131930552","https://openalex.org/W2133477654","https://openalex.org/W2135326109","https://openalex.org/W2136977855","https://openalex.org/W2138980320","https://openalex.org/W2139025111","https://openalex.org/W2141408320","https://openalex.org/W2141750609","https://openalex.org/W2141847640","https://openalex.org/W2142418779","https://openalex.org/W2143801061","https://openalex.org/W2144857133","https://openalex.org/W2144866873","https://openalex.org/W2144977835","https://openalex.org/W2146764278","https://openalex.org/W2147154551","https://openalex.org/W2149238618","https://openalex.org/W2149467186","https://openalex.org/W2149769193","https://openalex.org/W2151464048","https://openalex.org/W2152331922","https://openalex.org/W2155237411","https://openalex.org/W2155684118","https://openalex.org/W2155997603","https://openalex.org/W2157523980","https://openalex.org/W2158089930","https://openalex.org/W2158714788","https://openalex.org/W2159364800","https://openalex.org/W2162517990","https://openalex.org/W2164498514","https://openalex.org/W2165380507","https://openalex.org/W2166187656","https://openalex.org/W2168142239","https://openalex.org/W2168148721","https://openalex.org/W2168208027","https://openalex.org/W2168433858","https://openalex.org/W2168783124","https://openalex.org/W2169351355","https://openalex.org/W2170496993","https://openalex.org/W2170698318","https://openalex.org/W2171661102","https://openalex.org/W2247766769","https://openalex.org/W2325611247","https://openalex.org/W2406149317","https://openalex.org/W2752885492","https://openalex.org/W3095583226","https://openalex.org/W3206781288","https://openalex.org/W4213167074","https://openalex.org/W4229588480","https://openalex.org/W4229671302","https://openalex.org/W4230903726","https://openalex.org/W4230932396","https://openalex.org/W4236236547","https://openalex.org/W4236413252","https://openalex.org/W4238012001","https://openalex.org/W4241051276","https://openalex.org/W4241536314","https://openalex.org/W4242043490","https://openalex.org/W4242069466","https://openalex.org/W4245803912","https://openalex.org/W4246074332","https://openalex.org/W4246450523","https://openalex.org/W4250374990","https://openalex.org/W4250613417","https://openalex.org/W4255619361","https://openalex.org/W4292239814","https://openalex.org/W4298298418","https://openalex.org/W4366064364","https://openalex.org/W6622161800","https://openalex.org/W6634401242","https://openalex.org/W6639918549","https://openalex.org/W6641495238","https://openalex.org/W6648920339","https://openalex.org/W6664387049","https://openalex.org/W6669415759","https://openalex.org/W6671885562","https://openalex.org/W6675121800","https://openalex.org/W6678791002","https://openalex.org/W6680002762","https://openalex.org/W6680848828","https://openalex.org/W6682768705","https://openalex.org/W6683064589","https://openalex.org/W6683627369","https://openalex.org/W6684007944","https://openalex.org/W6684463743","https://openalex.org/W6685021472","https://openalex.org/W6685058994","https://openalex.org/W6685170592","https://openalex.org/W6807873839","https://openalex.org/W6817966389","https://openalex.org/W6823840574","https://openalex.org/W6858716923","https://openalex.org/W7029321148","https://openalex.org/W7074174642","https://openalex.org/W7075745129"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W93312527","https://openalex.org/W2603296253","https://openalex.org/W1589203209","https://openalex.org/W2557454913","https://openalex.org/W828925460","https://openalex.org/W11365241","https://openalex.org/W1013667899","https://openalex.org/W2559405764"],"abstract_inverted_index":{"Les":[0,267],"seq\u00fc\u00e8ncies":[1,32,51,73,89,105,121,151,167,185,303],"s\u00f3n":[2,311],"una":[3,18,56,156,239,362],"de":[4,7,20,26,31,38,50,57,63,76,87,125,160,186,205,212,220,250,261,264,286,288,321,329,332,344,348,359,364,366,373,383,389,395],"les":[5,58,64,104,227,265,302,349,392],"estructures":[6,128],"dades":[8],"m\u00e9s":[9,60,66,312],"vers\u00e0tils":[10],"que":[11,131,149,180,245,272,304],"existeixen.":[12],"De":[13],"forma":[14,147,390],"relativament":[15],"senzilla,":[16],"en":[17,109,148,166,177,252,361,399],"seq\u00fc\u00e8ncia":[19,275,285],"s\u00edmbols":[21],"es":[22,33,74,123,293,323],"pot":[23,324],"emmagatzemar":[24],"informaci\u00f3":[25,108,162],"qualsevol":[27],"tipus.":[28],"L'an\u00e0lisi":[29],"sistem\u00e0tic":[30],"un":[34,85,173,203,209,218,258],"\u00e0rea":[35],"molt":[36],"rica":[37],"l'algor\u00edsmica":[39],"amb":[40,44,217,238],"numeroses":[41],"aproximacions":[42,65],"desenvolupades":[43],"\u00e9xit.":[45],"En":[46,300],"concret,":[47],"la":[48,77,81,93,99,107,116,134,146,161,196,248,262,273,306,330,345,374,380,384],"comparaci\u00f3":[49,117],"mitjan\u00e7ant":[52],"l'alineament":[53],"d'aquestes":[54],"\u00e9s":[55,91,181,257],"eines":[59],"potents.":[61],"Una":[62],"populars":[67],"i":[68,314,339,376],"eficients":[69],"per":[70,96,194,234,291,370],"alinear":[71],"dues":[72,88,120,150,184],"l'\u00fas":[75],"programaci\u00f3":[78,178],"din\u00e0mica.":[79],"Malgrat":[80],"seva":[82,100,197,274],"evident":[83],"utilitat,":[84],"alineament":[86],"no":[90,122,241,340],"sempre":[92],"millor":[94],"opci\u00f3":[95],"a":[97,144,190,327,342,410,413,428,445,535,572,579,614,664],"caracteritzar":[98],"funci\u00f3.":[101],"Moltes":[102],"vegades,":[103],"codifiquen":[106],"diferents":[110,298],"nivells":[111],"(meta-informaci\u00f3).":[112],"&lt;br/&gt;\u00c9s":[113],"llavors":[114,247],"quan":[115],"directa":[118],"entre":[119,137,269,297],"capa\u00e7":[124,182,207],"revelar":[126],"aquelles":[127],"d'ordre":[129],"superior":[130],"podrien":[132],"explicar":[133,325],"relaci\u00f3":[135],"establerta":[136],"aquestes":[138],"seq\u00fc\u00e8ncies.&lt;br/&gt;&lt;br/&gt;Amb":[139],"aquest":[140],"treball":[141],"hem":[142,171,201,225,354,378],"contribu\u00eft":[143],"millorar":[145],"poden":[152],"ser":[153],"comparades,":[154],"desenvolupant":[155],"fam\u00edlia":[157],"d'algorismes":[158],"d'alineament":[159],"d'alt":[163,337],"nivell":[164,338],"codificada":[165],"biol\u00f2giques":[168],"(meta-alineaments).":[169],"Inicialment,":[170],"redissenyat":[172],"antic":[174],"algorisme,":[175],"basat":[176],"din\u00e0mica,":[179],"d'alinear":[183,208],"meta-informaci\u00f3,":[187],"procedint":[188],"despr\u00e9s":[189],"introduir-hi":[191],"v\u00e0ries":[192],"millores":[193],"accelerar":[195],"velocitat.":[198],"A":[199,223],"continuaci\u00f3":[200],"desenvolupat":[202],"algorisme":[204],"meta-aliniament":[206],"n\u00famero":[210],"m\u00faltiple":[211],"seq\u00fc\u00e8ncies,":[213],"combinant":[214],"l'algorisme":[215,233],"general":[216,586],"esquema":[219],"clustering":[221],"jer\u00e0rquic.":[222],"m\u00e9s,":[224],"estudiat":[226],"propietats":[228],"dels":[229,308],"meta-alineaments":[230],"produ\u00efts,":[231],"modificant":[232],"tal":[235],"d'identificar":[236],"alineaments":[237],"configuraci\u00f3":[240],"necess\u00e0riament":[242],"col.lineal,":[243],"el":[244],"permet":[246],"detecci\u00f3":[249],"permutacions":[251],"els":[253,356],"resultats.&lt;br/&gt;&lt;br/&gt;La":[254],"vida":[255],"molecular":[256],"exemple":[259],"paradigm\u00e1tic":[260],"versatilitat":[263],"seq\u00fc\u00e8ncies.":[266,351],"comparaciones":[268],"genomes,":[270],"ara":[271],"est\u00e0":[276],"disponible,":[277],"permeten":[278],"identificar":[279],"numerosos":[280],"elements":[281],"biol\u00f2gicament":[282],"funcionals.":[283],"La":[284],"nucle\u00f2tids":[287],"molts":[289],"gens,":[290],"exemple,":[292],"troba":[294],"acceptablement":[295],"conservada":[296],"esp\u00e8cies.":[299,401],"canvi,":[301],"regulen":[305],"activaci\u00f3":[307],"propis":[309],"gens":[310,322,396],"curtes":[313],"variables.":[315],"Aix\u00ed":[316],"l'activaci\u00f3":[317],"simult\u00e0nea":[318],"d'un":[319],"conjunt":[320],"nom\u00e9s":[326],"partir":[328,343],"conservaci\u00f3":[331,347],"configuracions":[333],"comunes":[334],"d'elements":[335],"reguladors":[336],"pas":[341],"simple":[346],"seves":[350],"Per":[352],"tant,":[353],"entrenat":[355],"nostres":[357],"programes":[358],"meta-alineament":[360],"s\u00e8rie":[363],"conjunts":[365],"regions":[367,393,703,722],"reguladores":[368],"recopilades":[369],"nosaltres":[371],"mateixos":[372],"literatura":[375],"despr\u00e8s,":[377],"provat":[379],"utilitat":[381],"biol\u00f2gica":[382],"nostra":[385],"aproximaci\u00f3,":[386],"caracteritzant":[387],"autom\u00e0ticament":[388],"exitosa":[391],"activadores":[394],"humans":[397],"conservats":[398],"altres":[400],"The":[402,439,631],"sequences":[403,426,530,548,564,649],"are":[404,470,655],"very":[405,429,446],"versatile":[406],"data":[407],"structures.":[408],"In":[409,493,592,646],"straightforward":[411],"manner,":[412],"sequence":[414,442,497,619,633,689],"of":[415,421,425,432,436,454,480,490,538,565,599,617,626,634,663,666,674,678,701,714,723],"symbols":[416],"can":[417,508,531,669,683],"store":[418],"any":[419],"type":[420],"information.":[422],"Systematic":[423],"analysis":[424,448],"is":[427,444,452,499,613,639],"rich":[430],"area":[431],"algorithmics,":[433],"with":[434,518,588],"lots":[435],"successful":[437],"applications.":[438],"comparison":[440,498],"by":[441,583],"alignment":[443],"powerful":[447],"tool.":[449],"Dynamic":[450],"programming":[451],"one":[453],"the":[455,473,478,511,514,519,525,585,589,597,600,604,618,624,648,652,660,688,706,712,720],"most":[456],"popular":[457],"and":[458,657,726],"efficient":[459],"approaches":[460],"to":[461,502,523,561,606,717],"align":[462,541,562],"two":[463,481,529,563],"sequences.":[464,482],"However,":[465],"despite":[466],"their":[467,727],"utility,":[468],"alignments":[469],"not":[471,500,684],"always":[472],"best":[474],"option":[475],"for":[476,571,637],"characterizing":[477],"function":[479],"Sequences":[483],"often":[484],"encode":[485],"information":[486,544],"in":[487,527,546,558,672,698,729],"different":[488,644],"levels":[489],"organization":[491],"(meta-information).":[492],"these":[494],"cases,":[495],"direct":[496],"able":[501],"unveil":[503],"those":[504],"higher-order":[505,679],"structures":[506],"that":[507,540,650,682],"actually":[509],"explain":[510],"relationship":[512],"between":[513,643,676],"sequences.&lt;br/&gt;&lt;br/&gt;We":[515],"have":[516,552,577,595,693,710],"contributed":[517],"work":[520],"presented":[521],"here":[522],"improve":[524],"way":[526],"which":[528],"be":[532,670,685],"compared,":[533],"developing":[534],"new":[536],"family":[537],"algorithms":[539],"high":[542],"level":[543],"encoded":[545],"biological":[547],"(meta-alignment).":[549],"Initially,":[550],"we":[551,576,594,709],"redesigned":[553],"an":[554],"existent":[555],"algorithm,":[556,582],"based":[557],"dynamic":[559],"programming,":[560],"meta-information,":[566],"introducing":[567],"later":[568],"several":[569,699],"improvements":[570],"better":[573],"performance.":[574],"Next,":[575],"developed":[578],"multiple":[580],"meta-alignment":[581,696],"combining":[584],"algorithm":[587,605],"progressive":[590],"schema.":[591],"addition,":[593],"studied":[596],"properties":[598],"resulting":[601],"meta-alignments,":[602],"modifying":[603],"identify":[607],"non-collinear":[608],"or":[609],"permuted":[610],"configurations.&lt;br/&gt;&lt;br/&gt;Molecular":[611],"life":[612],"great":[615],"example":[616],"versatility.":[620],"Comparative":[621],"genomics":[622],"provide":[623],"identification":[625],"numerous":[627],"biologically":[628],"functional":[629],"elements.":[630],"nucleotide":[632],"many":[635],"genes,":[636],"example,":[638],"relatively":[640],"well":[641],"conserved":[642],"species.":[645,731],"contrast,":[647],"regulate":[651],"gene":[653],"expression":[654],"shorter":[656],"weaker.":[658],"Thus,":[659],"simultaneous":[661],"activation":[662],"set":[665],"genes":[667,725],"only":[668],"explained":[671],"terms":[673],"conservation":[675],"configurations":[677],"regulatory":[680,702],"elements,":[681],"detected":[686],"at":[687],"level.":[690],"We,":[691],"therefore,":[692],"trained":[694],"our":[695,715],"programs":[697],"datasets":[700],"collected":[704],"from":[705],"literature.":[707],"Then,":[708],"tested":[711],"accuracy":[713],"approximation":[716],"successfully":[718],"characterize":[719],"promoter":[721],"human":[724],"orthologs":[728],"other":[730]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2016-06-24T00:00:00"}
