{"id":"https://openalex.org/W4399938093","doi":"https://doi.org/10.56553/popets-2024-0062","title":"Towards Biologically Plausible and Private Gene Expression Data Generation","display_name":"Towards Biologically Plausible and Private Gene Expression Data Generation","publication_year":2024,"publication_date":"2024-04-01","ids":{"openalex":"https://openalex.org/W4399938093","doi":"https://doi.org/10.56553/popets-2024-0062"},"language":"en","primary_location":{"id":"doi:10.56553/popets-2024-0062","is_oa":true,"landing_page_url":"https://doi.org/10.56553/popets-2024-0062","pdf_url":"https://petsymposium.org/popets/2024/popets-2024-0062.pdf","source":{"id":"https://openalex.org/S4210183172","display_name":"Proceedings on Privacy Enhancing Technologies","issn_l":"2299-0984","issn":["2299-0984"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320322","host_organization_name":"De Gruyter Open","host_organization_lineage":["https://openalex.org/P4310320322","https://openalex.org/P4310313990"],"host_organization_lineage_names":["De Gruyter Open","De Gruyter"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings on Privacy Enhancing Technologies","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://petsymposium.org/popets/2024/popets-2024-0062.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077770549","display_name":"Dingfan Chen","orcid":"https://orcid.org/0000-0001-7279-6624"},"institutions":[{"id":"https://openalex.org/I4210128801","display_name":"Helmholtz Center for Information Security","ror":"https://ror.org/02njgxr09","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210128801"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dingfan Chen","raw_affiliation_strings":["CISPA Helmholtz Center for Information Security","for ,","for ( ),","for () ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CISPA Helmholtz Center for Information Security","institution_ids":["https://openalex.org/I4210128801"]},{"raw_affiliation_string":"for ,","institution_ids":[]},{"raw_affiliation_string":"for ( ),","institution_ids":[]},{"raw_affiliation_string":"for () ,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032456819","display_name":"Marie Oestreich","orcid":"https://orcid.org/0000-0002-4754-1301"},"institutions":[{"id":"https://openalex.org/I2801533059","display_name":"German Center for Neurodegenerative Diseases","ror":"https://ror.org/043j0f473","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I2801533059","https://openalex.org/I4405256427"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marie Oestreich","raw_affiliation_strings":["German Center for Neurodegenerative Diseases (DZNE)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"German Center for Neurodegenerative Diseases (DZNE)","institution_ids":["https://openalex.org/I2801533059"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077949475","display_name":"Tejumade Afonja","orcid":"https://orcid.org/0000-0003-0639-9668"},"institutions":[{"id":"https://openalex.org/I4210128801","display_name":"Helmholtz Center for Information Security","ror":"https://ror.org/02njgxr09","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210128801"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tejumade Afonja","raw_affiliation_strings":["CISPA Helmholtz Center for Information Security","for ,","for () ,","for ( ),"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CISPA Helmholtz Center for Information Security","institution_ids":["https://openalex.org/I4210128801"]},{"raw_affiliation_string":"for ,","institution_ids":[]},{"raw_affiliation_string":"for () ,","institution_ids":[]},{"raw_affiliation_string":"for ( ),","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073096931","display_name":"Raouf Kerkouche","orcid":"https://orcid.org/0000-0002-1458-7805"},"institutions":[{"id":"https://openalex.org/I4210128801","display_name":"Helmholtz Center for Information Security","ror":"https://ror.org/02njgxr09","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210128801"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Raouf Kerkouche","raw_affiliation_strings":["CISPA Helmholtz Center for Information Security"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CISPA Helmholtz Center for Information Security","institution_ids":["https://openalex.org/I4210128801"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063916697","display_name":"Matthias Becker","orcid":"https://orcid.org/0000-0002-7120-4508"},"institutions":[{"id":"https://openalex.org/I2801533059","display_name":"German Center for Neurodegenerative Diseases","ror":"https://ror.org/043j0f473","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I2801533059","https://openalex.org/I4405256427"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Matthias Becker","raw_affiliation_strings":["German Center for Neurodegenerative Diseases (DZNE)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"German Center for Neurodegenerative Diseases (DZNE)","institution_ids":["https://openalex.org/I2801533059"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003887059","display_name":"Mario Fritz","orcid":"https://orcid.org/0000-0001-8949-9896"},"institutions":[{"id":"https://openalex.org/I4210128801","display_name":"Helmholtz Center for Information Security","ror":"https://ror.org/02njgxr09","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210128801"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Mario Fritz","raw_affiliation_strings":["CISPA Helmholtz Center for Information Security"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CISPA Helmholtz Center for Information Security","institution_ids":["https://openalex.org/I4210128801"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.6572,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.6566991,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"2024","issue":"2","first_page":"531","last_page":"554"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9046000242233276,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9046000242233276,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.523784339427948},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4798423945903778},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4503442645072937},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3545567989349365},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3538081645965576},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.283058762550354},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24486330151557922}],"concepts":[{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.523784339427948},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4798423945903778},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4503442645072937},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3545567989349365},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3538081645965576},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.283058762550354},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24486330151557922},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.56553/popets-2024-0062","is_oa":true,"landing_page_url":"https://doi.org/10.56553/popets-2024-0062","pdf_url":"https://petsymposium.org/popets/2024/popets-2024-0062.pdf","source":{"id":"https://openalex.org/S4210183172","display_name":"Proceedings on Privacy Enhancing Technologies","issn_l":"2299-0984","issn":["2299-0984"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320322","host_organization_name":"De Gruyter Open","host_organization_lineage":["https://openalex.org/P4310320322","https://openalex.org/P4310313990"],"host_organization_lineage_names":["De Gruyter Open","De Gruyter"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings on Privacy Enhancing Technologies","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.56553/popets-2024-0062","is_oa":true,"landing_page_url":"https://doi.org/10.56553/popets-2024-0062","pdf_url":"https://petsymposium.org/popets/2024/popets-2024-0062.pdf","source":{"id":"https://openalex.org/S4210183172","display_name":"Proceedings on Privacy Enhancing Technologies","issn_l":"2299-0984","issn":["2299-0984"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320322","host_organization_name":"De Gruyter Open","host_organization_lineage":["https://openalex.org/P4310320322","https://openalex.org/P4310313990"],"host_organization_lineage_names":["De Gruyter Open","De Gruyter"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings on Privacy Enhancing Technologies","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4399938093.pdf"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W1959608418","https://openalex.org/W1966327575","https://openalex.org/W1981509058","https://openalex.org/W2027595342","https://openalex.org/W2032938251","https://openalex.org/W2114104545","https://openalex.org/W2146512944","https://openalex.org/W2146950091","https://openalex.org/W2149573463","https://openalex.org/W2152239989","https://openalex.org/W2179438025","https://openalex.org/W2188365844","https://openalex.org/W2236822143","https://openalex.org/W2473418344","https://openalex.org/W2612467560","https://openalex.org/W2739748921","https://openalex.org/W2780155440","https://openalex.org/W2796102206","https://openalex.org/W2806276686","https://openalex.org/W2949067670","https://openalex.org/W2950183623","https://openalex.org/W2965527189","https://openalex.org/W2995171379","https://openalex.org/W3000350302","https://openalex.org/W3007722513","https://openalex.org/W3071470454","https://openalex.org/W3110164654","https://openalex.org/W3115920135","https://openalex.org/W3158064698","https://openalex.org/W3163323524","https://openalex.org/W3188714084","https://openalex.org/W3214280461","https://openalex.org/W4224225126","https://openalex.org/W4252684946","https://openalex.org/W4281759935","https://openalex.org/W4285667145","https://openalex.org/W4286908675","https://openalex.org/W4287327112","https://openalex.org/W4293117140","https://openalex.org/W4308672549","https://openalex.org/W4318344413","https://openalex.org/W4320013936","https://openalex.org/W4392552325"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W2803323662","https://openalex.org/W3032874291","https://openalex.org/W2005057264","https://openalex.org/W2363156284","https://openalex.org/W2415025170"],"abstract_inverted_index":{"Generative":[0],"models":[1,56],"trained":[2],"with":[3],"Differential":[4],"Privacy":[5],"(DP)":[6],"are":[7,133,160],"becoming":[8],"increasingly":[9],"prominent":[10],"in":[11,58,148,182,193],"the":[12,99,111,143,157,165,169],"creation":[13],"of":[14,52,75,102,115,135,156,168,179],"synthetic":[15],"data":[16,42],"for":[17,36,122,190],"downstream":[18,88,139],"applications.":[19],"Existing":[20],"literature,":[21],"however,":[22],"primarily":[23],"focuses":[24],"on":[25,65],"basic":[26],"benchmarking":[27],"datasets":[28],"and":[29,39,92,113,118,185],"tends":[30],"to":[31,142,162],"report":[32],"promising":[33],"results":[34],"only":[35],"elementary":[37],"metrics":[38,146],"relatively":[40],"simple":[41],"distributions.":[43],"In":[44],"this":[45,183],"paper,":[46],"we":[47,152],"initiate":[48],"a":[49,72,175,187],"systematic":[50],"analysis":[51,74,128],"how":[53],"DP":[54,78,104,158],"generative":[55],"perform":[57],"their":[59],"natural":[60],"application":[61],"scenarios,":[62],"specifically":[63],"focusing":[64],"real-world":[66],"gene":[67],"expression":[68],"data.":[69],"We":[70],"conduct":[71],"comprehensive":[73],"five":[76],"representative":[77],"generation":[79,105],"methods,":[80],"examining":[81],"them":[82],"from":[83],"various":[84],"angles,":[85],"such":[86],"as":[87],"utility,":[89,140],"statistical":[90],"properties,":[91],"biological":[93,166],"plausibility.":[94],"Our":[95],"extensive":[96],"evaluation":[97,145],"illuminates":[98],"unique":[100],"characteristics":[101,167],"each":[103,116],"method,":[106],"offering":[107],"critical":[108],"insights":[109],"into":[110],"strengths":[112],"weaknesses":[114],"approach,":[117],"uncovering":[119],"intriguing":[120],"possibilities":[121],"future":[123,191],"developments.":[124],"Perhaps":[125],"surprisingly,":[126],"our":[127],"reveals":[129],"that":[130,154],"most":[131],"methods":[132,159],"capable":[134],"achieving":[136],"seemingly":[137],"reasonable":[138],"according":[141],"standard":[144],"considered":[147],"existing":[149],"literature.":[150],"Nevertheless,":[151],"find":[153],"none":[155],"able":[161],"accurately":[163],"capture":[164],"real":[170],"dataset.":[171],"This":[172],"observation":[173],"suggests":[174],"potential":[176],"over-optimistic":[177],"assessment":[178],"current":[180],"methodologies":[181],"field":[184],"underscores":[186],"pressing":[188],"need":[189],"enhancements":[192],"model":[194],"design.":[195]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
