{"id":"https://openalex.org/W2407608878","doi":"https://doi.org/10.5591/978-1-57735-516-8/ijcai11-431","title":"Exploring Protein Fragment Assembly Using CLP","display_name":"Exploring Protein Fragment Assembly Using CLP","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W2407608878","doi":"https://doi.org/10.5591/978-1-57735-516-8/ijcai11-431","mag":"2407608878"},"language":"en","primary_location":{"id":"pmh:oai:air.uniud.it:11390/871107","is_oa":false,"landing_page_url":"http://hdl.handle.net/11390/871107","pdf_url":null,"source":{"id":"https://openalex.org/S4306401163","display_name":"Institutional Research Information System (University of Udine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I129043915","host_organization_name":"University of Udine","host_organization_lineage":["https://openalex.org/I129043915"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"},"type":"conference-paper","indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046219129","display_name":"Alessandro Dal Pal\u00f9","orcid":"https://orcid.org/0000-0003-0353-158X"},"institutions":[{"id":"https://openalex.org/I124601658","display_name":"University of Parma","ror":"https://ror.org/02k7wn190","country_code":"IT","type":"education","lineage":["https://openalex.org/I124601658"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"ALESSANDRO DAL PAL\u00d9","raw_affiliation_strings":["Universit\u00e0 di Parma, Parma, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e0 di Parma, Parma, Italy","institution_ids":["https://openalex.org/I124601658"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024528910","display_name":"Enrico Pontelli","orcid":"https://orcid.org/0000-0002-7753-1737"},"institutions":[{"id":"https://openalex.org/I129043915","display_name":"University of Udine","ror":"https://ror.org/05ht0mh31","country_code":"IT","type":"education","lineage":["https://openalex.org/I129043915"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"ENRICO PONTELLI","raw_affiliation_strings":["Universita di Udine, Udine, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universita di Udine, Udine, Italy","institution_ids":["https://openalex.org/I129043915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064407367","display_name":"Agostino Dovier","orcid":"https://orcid.org/0000-0003-2052-8593"},"institutions":[{"id":"https://openalex.org/I129043915","display_name":"University of Udine","ror":"https://ror.org/05ht0mh31","country_code":"IT","type":"education","lineage":["https://openalex.org/I129043915"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"DOVIER, Agostino","raw_affiliation_strings":["Universita di Udine, Udine, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universita di Udine, Udine, Italy","institution_ids":["https://openalex.org/I129043915"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010370846","display_name":"Federico Fogolari","orcid":"https://orcid.org/0000-0001-9862-250X"},"institutions":[{"id":"https://openalex.org/I10052268","display_name":"New Mexico State University","ror":"https://ror.org/00hpz7z43","country_code":"US","type":"education","lineage":["https://openalex.org/I10052268"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"FOGOLARI, Federico","raw_affiliation_strings":["New Mexico State Univ., Las Cruces NM"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"New Mexico State Univ., Las Cruces NM","institution_ids":["https://openalex.org/I10052268"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9832000136375427,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9832000136375427,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9790999889373779,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10404","display_name":"Enzyme Catalysis and Immobilization","score":0.9743000268936157,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fragment","display_name":"Fragment (logic)","score":0.7894887924194336},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6545036435127258},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.6256958842277527},{"id":"https://openalex.org/keywords/constraint-logic-programming","display_name":"Constraint logic programming","score":0.6202995777130127},{"id":"https://openalex.org/keywords/centroid","display_name":"Centroid","score":0.5884988903999329},{"id":"https://openalex.org/keywords/constraint","display_name":"Constraint (computer-aided design)","score":0.5819310545921326},{"id":"https://openalex.org/keywords/constraint-programming","display_name":"Constraint programming","score":0.5508114695549011},{"id":"https://openalex.org/keywords/constraint-satisfaction","display_name":"Constraint satisfaction","score":0.5491235852241516},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5476270914077759},{"id":"https://openalex.org/keywords/constraint-satisfaction-problem","display_name":"Constraint satisfaction problem","score":0.5127114057540894},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.44590747356414795},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.42380616068840027},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4128651022911072},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.34574633836746216},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.29200172424316406},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24784782528877258},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19714662432670593},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.11334261298179626}],"concepts":[{"id":"https://openalex.org/C2776235265","wikidata":"https://www.wikidata.org/wiki/Q18392052","display_name":"Fragment (logic)","level":2,"score":0.7894887924194336},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6545036435127258},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.6256958842277527},{"id":"https://openalex.org/C176783269","wikidata":"https://www.wikidata.org/wiki/Q5164378","display_name":"Constraint logic programming","level":4,"score":0.6202995777130127},{"id":"https://openalex.org/C146599234","wikidata":"https://www.wikidata.org/wiki/Q511093","display_name":"Centroid","level":2,"score":0.5884988903999329},{"id":"https://openalex.org/C2776036281","wikidata":"https://www.wikidata.org/wiki/Q48769818","display_name":"Constraint (computer-aided design)","level":2,"score":0.5819310545921326},{"id":"https://openalex.org/C173404611","wikidata":"https://www.wikidata.org/wiki/Q528588","display_name":"Constraint programming","level":3,"score":0.5508114695549011},{"id":"https://openalex.org/C44616089","wikidata":"https://www.wikidata.org/wiki/Q30158686","display_name":"Constraint satisfaction","level":3,"score":0.5491235852241516},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5476270914077759},{"id":"https://openalex.org/C199622910","wikidata":"https://www.wikidata.org/wiki/Q1128326","display_name":"Constraint satisfaction problem","level":3,"score":0.5127114057540894},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.44590747356414795},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.42380616068840027},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4128651022911072},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.34574633836746216},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.29200172424316406},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24784782528877258},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19714662432670593},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.11334261298179626},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C137631369","wikidata":"https://www.wikidata.org/wiki/Q7617831","display_name":"Stochastic programming","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"pmh:oai:air.uniud.it:11390/871107","is_oa":false,"landing_page_url":"http://hdl.handle.net/11390/871107","pdf_url":null,"source":{"id":"https://openalex.org/S4306401163","display_name":"Institutional Research Information System (University of Udine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I129043915","host_organization_name":"University of Udine","host_organization_lineage":["https://openalex.org/I129043915"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.8500000238418579,"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W1551934730","https://openalex.org/W1561877279","https://openalex.org/W1845127254","https://openalex.org/W2006700664","https://openalex.org/W2015613652","https://openalex.org/W2019189533","https://openalex.org/W2074986801","https://openalex.org/W2110483430","https://openalex.org/W2115041445","https://openalex.org/W2115213105","https://openalex.org/W2117020466","https://openalex.org/W2128607739","https://openalex.org/W2611013588"],"related_works":["https://openalex.org/W2124848384","https://openalex.org/W2051646486","https://openalex.org/W2045777307","https://openalex.org/W1561877279","https://openalex.org/W2063087637","https://openalex.org/W2017414090","https://openalex.org/W1984527736","https://openalex.org/W1975017420","https://openalex.org/W1845127254","https://openalex.org/W2137105118","https://openalex.org/W2096821580","https://openalex.org/W2065256096","https://openalex.org/W2002930355","https://openalex.org/W124155803","https://openalex.org/W1043008600","https://openalex.org/W2013205100","https://openalex.org/W1973897761","https://openalex.org/W1564001275","https://openalex.org/W1539892855","https://openalex.org/W113688923"],"abstract_inverted_index":{"The":[0,23,55,77,94],"paper":[1],"investigates":[2],"a":[3,18,30,33,42,48,60,71,88],"novel":[4],"approach,":[5],"based":[6],"on":[7],"Constraint":[8],"Logic":[9],"Programming":[10],"(CLP),":[11],"to":[12],"predict":[13],"potential":[14],"3D":[15],"conformations":[16],"of":[17,35,59,101,108,114,119],"protein":[19,37,65,84],"via":[20],"fragments":[21,24,40],"assembly.":[22],"are":[25],"extracted":[26],"and":[27,70,86,99,104,117],"clustered":[28],"by":[29],"preprocessor":[31],"from":[32],"database":[34],"known":[36],"structures.":[38],"Assembling":[39],"into":[41],"complete":[43],"conformation":[44],"is":[45],"modeled":[46],"as":[47],"constraint":[49],"satisfaction":[50],"problem":[51],"solved":[52],"using":[53],"CLP.":[54],"approach":[56,78,110],"makes":[57],"use":[58],"simplified":[61],"C\u03b1-side":[62],"chain":[63],"centroid":[64],"model,":[66],"that":[67],"offers":[68],"efficiency":[69,100],"good":[72],"approximation":[73],"for":[74,83],"space":[75],"filling.":[76],"adapts":[79],"existing":[80],"energy":[81],"models":[82],"representation":[85],"applies":[87],"large":[89],"neighboring":[90],"search":[91],"(LNS)":[92],"strategy.":[93],"results":[95],"show":[96],"the":[97,102,105,109,112,120],"feasibility":[98],"method,":[103],"declarative":[106],"nature":[107],"simplifies":[111],"introduction":[113],"additional":[115],"knowledge":[116],"variations":[118],"model.":[121]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
