{"id":"https://openalex.org/W2058777872","doi":"https://doi.org/10.5539/cis.v2n4p20","title":"CalOra: A software to simulate calcium diffusion","display_name":"CalOra: A software to simulate calcium diffusion","publication_year":2009,"publication_date":"2009-10-22","ids":{"openalex":"https://openalex.org/W2058777872","doi":"https://doi.org/10.5539/cis.v2n4p20","mag":"2058777872"},"language":"en","primary_location":{"id":"doi:10.5539/cis.v2n4p20","is_oa":true,"landing_page_url":"https://doi.org/10.5539/cis.v2n4p20","pdf_url":"https://ccsenet.org/journal/index.php/cis/article/download/3883/3712","source":{"id":"https://openalex.org/S2764452479","display_name":"Computer and Information Science","issn_l":"1913-8989","issn":["1913-8989","1913-8997"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310322531","host_organization_name":"Canadian Center of Science and Education","host_organization_lineage":["https://openalex.org/P4310322531"],"host_organization_lineage_names":["Canadian Center of Science and Education"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer and Information Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ccsenet.org/journal/index.php/cis/article/download/3883/3712","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038366140","display_name":"Shivendra G. Tewari","orcid":"https://orcid.org/0000-0003-0310-0915"},"institutions":[{"id":"https://openalex.org/I91277730","display_name":"Maulana Azad National Institute of Technology","ror":"https://ror.org/026vtd268","country_code":"IN","type":"education","lineage":["https://openalex.org/I91277730"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Shivendra Gajraj Tewari","raw_affiliation_strings":["Department of Mathematics Maulana Azad National Institute of Technology Bhopal -462051, India","Maulana Azad national Institute of Technology"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics Maulana Azad National Institute of Technology Bhopal -462051, India","institution_ids":["https://openalex.org/I91277730"]},{"raw_affiliation_string":"Maulana Azad national Institute of Technology","institution_ids":["https://openalex.org/I91277730"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5038366140"],"corresponding_institution_ids":["https://openalex.org/I91277730"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.12077658,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"2","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10493","display_name":"Ion channel regulation and function","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10493","display_name":"Ion channel regulation and function","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11457","display_name":"Adipose Tissue and Metabolism","score":0.9858999848365784,"subfield":{"id":"https://openalex.org/subfields/2737","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10077","display_name":"Neuroscience and Neuropharmacology Research","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8178532123565674},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.693099856376648},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.6849001049995422},{"id":"https://openalex.org/keywords/oracle","display_name":"Oracle","score":0.6502896547317505},{"id":"https://openalex.org/keywords/calcium","display_name":"Calcium","score":0.6077806949615479},{"id":"https://openalex.org/keywords/diffusion","display_name":"Diffusion","score":0.514893651008606},{"id":"https://openalex.org/keywords/calcium-in-biology","display_name":"Calcium in biology","score":0.4949447512626648},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.45826393365859985},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.39969632029533386},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.32204627990722656},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.18201681971549988},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.12115612626075745},{"id":"https://openalex.org/keywords/thermodynamics","display_name":"Thermodynamics","score":0.10791414976119995},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.07100605964660645}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8178532123565674},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.693099856376648},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.6849001049995422},{"id":"https://openalex.org/C55166926","wikidata":"https://www.wikidata.org/wiki/Q2892946","display_name":"Oracle","level":2,"score":0.6502896547317505},{"id":"https://openalex.org/C519063684","wikidata":"https://www.wikidata.org/wiki/Q706","display_name":"Calcium","level":2,"score":0.6077806949615479},{"id":"https://openalex.org/C69357855","wikidata":"https://www.wikidata.org/wiki/Q163214","display_name":"Diffusion","level":2,"score":0.514893651008606},{"id":"https://openalex.org/C181080969","wikidata":"https://www.wikidata.org/wiki/Q60097","display_name":"Calcium in biology","level":3,"score":0.4949447512626648},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.45826393365859985},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.39969632029533386},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.32204627990722656},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.18201681971549988},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.12115612626075745},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.10791414976119995},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.07100605964660645},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5539/cis.v2n4p20","is_oa":true,"landing_page_url":"https://doi.org/10.5539/cis.v2n4p20","pdf_url":"https://ccsenet.org/journal/index.php/cis/article/download/3883/3712","source":{"id":"https://openalex.org/S2764452479","display_name":"Computer and Information Science","issn_l":"1913-8989","issn":["1913-8989","1913-8997"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310322531","host_organization_name":"Canadian Center of Science and Education","host_organization_lineage":["https://openalex.org/P4310322531"],"host_organization_lineage_names":["Canadian Center of Science and Education"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer and Information Science","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.5539/cis.v2n4p20","is_oa":true,"landing_page_url":"https://doi.org/10.5539/cis.v2n4p20","pdf_url":"https://ccsenet.org/journal/index.php/cis/article/download/3883/3712","source":{"id":"https://openalex.org/S2764452479","display_name":"Computer and Information Science","issn_l":"1913-8989","issn":["1913-8989","1913-8997"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310322531","host_organization_name":"Canadian Center of Science and Education","host_organization_lineage":["https://openalex.org/P4310322531"],"host_organization_lineage_names":["Canadian Center of Science and Education"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer and Information Science","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2058777872.pdf","grobid_xml":"https://content.openalex.org/works/W2058777872.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1973040508","https://openalex.org/W1974888639","https://openalex.org/W1984989107","https://openalex.org/W1992347253","https://openalex.org/W1994348876","https://openalex.org/W2007263885","https://openalex.org/W2017245381","https://openalex.org/W2052880955","https://openalex.org/W2081172975","https://openalex.org/W2112483397","https://openalex.org/W2495550846","https://openalex.org/W4237910213","https://openalex.org/W6648624789"],"related_works":["https://openalex.org/W2411134315","https://openalex.org/W2420935970","https://openalex.org/W2077726278","https://openalex.org/W2416678573","https://openalex.org/W2411862861","https://openalex.org/W83059117","https://openalex.org/W1999609139","https://openalex.org/W1993691635","https://openalex.org/W2052880955","https://openalex.org/W2210603794"],"abstract_inverted_index":{"Calcium":[0],"is":[1,26,86],"a":[2,66,119,123],"vital":[3],"second":[4],"messenger":[5],"which":[6],"regulates":[7],"processes":[8],"in":[9,60],"almost":[10],"all":[11,104,113],"cell":[12],"types":[13],"like":[14],"myocytes":[15],",hepatocytes,":[16],"oocytes,neurons":[17],"etc.Due":[18],"to":[19,29,68,108,117,127],"spatiotemporal":[20],"limitation":[21],"of":[22,41,122],"imaging":[23],"techniques,":[24],"it":[25],"not":[27],"possible":[28],"determine":[30],"calcium":[31,42],"concentration":[32],"at":[33],"macroscopic":[34],"level.":[35],"For":[36],"this":[37,61],"purpose":[38],"mathematical":[39,48,133],"modeling":[40],"dynamics":[43,53],"provides":[44],"beautiful":[45],"alternatives.":[46],"Several":[47],"models":[49],"governing":[50],"intracellular":[51],"Ca2+":[52],"have":[54,64,118],"been":[55],"proposed":[56],"thus":[57],"far.":[58],"Here":[59],"paper":[62],"we":[63],"developed":[65],"software":[67,85,102],"simulate":[69,109],"two":[70],"distinct":[71],"approximations,":[72],"namely,":[73],"Excess":[74],"buffering":[75],"approximation":[76,81],"(EBA),":[77],"and":[78,91,126],"Rapid":[79],"Buffering":[80],"(RBA).":[82],"The":[83,101],"given":[84],"based":[87,95],"on":[88,96],"oracle":[89],"10g":[90],"follows":[92],"an":[93,97],"algorithm":[94],"explicit":[98],"Eulers":[99],"method.":[100],"contains":[103],"the":[105,110,132],"important":[106,114],"functionalities":[107],"approximations":[111],"for":[112],"biophysical":[115],"constants,":[116],"graphical":[120],"representation":[121],"simulated":[124],"model":[125],"do":[128],"comparative":[129],"analysis":[130],"among":[131],"models.":[134]},"counts_by_year":[{"year":2017,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
