{"id":"https://openalex.org/W2975344155","doi":"https://doi.org/10.5334/dsj-2019-047","title":"Building Infrastructure for African Human Genomic Data Management","display_name":"Building Infrastructure for African Human Genomic Data Management","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2975344155","doi":"https://doi.org/10.5334/dsj-2019-047","mag":"2975344155"},"language":"en","primary_location":{"id":"doi:10.5334/dsj-2019-047","is_oa":true,"landing_page_url":"https://doi.org/10.5334/dsj-2019-047","pdf_url":"http://datascience.codata.org/articles/10.5334/dsj-2019-047/galley/894/download/","source":{"id":"https://openalex.org/S62969111","display_name":"Data Science Journal","issn_l":"1683-1470","issn":["1683-1470"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320511","host_organization_name":"Ubiquity Press","host_organization_lineage":["https://openalex.org/P4310320511"],"host_organization_lineage_names":["Ubiquity Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data Science Journal","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"http://datascience.codata.org/articles/10.5334/dsj-2019-047/galley/894/download/","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073536743","display_name":"Ziyaad Parker","orcid":null},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]}],"countries":["ZA"],"is_corresponding":true,"raw_author_name":"Ziyaad Parker","raw_affiliation_strings":["Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, University of Cape Town"],"affiliations":[{"raw_affiliation_string":"Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, University of Cape Town","institution_ids":["https://openalex.org/I157614274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091110192","display_name":"Suresh Maslamoney","orcid":"https://orcid.org/0000-0002-3118-8945"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Suresh Maslamoney","raw_affiliation_strings":["Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, University of Cape Town"],"affiliations":[{"raw_affiliation_string":"Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, University of Cape Town","institution_ids":["https://openalex.org/I157614274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033056936","display_name":"Ayton Meintjes","orcid":"https://orcid.org/0000-0001-5076-2941"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Ayton Meintjes","raw_affiliation_strings":["Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, University of Cape Town"],"affiliations":[{"raw_affiliation_string":"Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, University of Cape Town","institution_ids":["https://openalex.org/I157614274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007711928","display_name":"Gerrit Botha","orcid":"https://orcid.org/0000-0001-7499-3760"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Gerrit Botha","raw_affiliation_strings":["Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, University of Cape Town"],"affiliations":[{"raw_affiliation_string":"Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, University of Cape Town","institution_ids":["https://openalex.org/I157614274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017042855","display_name":"Sumir Panji","orcid":"https://orcid.org/0000-0003-0447-0598"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Sumir Panji","raw_affiliation_strings":["Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, University of Cape Town"],"affiliations":[{"raw_affiliation_string":"Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, University of Cape Town","institution_ids":["https://openalex.org/I157614274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010060892","display_name":"Scott Hazelhurst","orcid":"https://orcid.org/0000-0002-0581-149X"},"institutions":[{"id":"https://openalex.org/I192619145","display_name":"University of the Witwatersrand","ror":"https://ror.org/03rp50x72","country_code":"ZA","type":"education","lineage":["https://openalex.org/I192619145"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Scott Hazelhurst","raw_affiliation_strings":["School of Electrical and Information Engineering and Sydney Brenner Institute for Molecular Bioscience, University of\u00a0the Witwatersrand, Johannesburg; Sydney Brenner Institute for Molecular Bioscience, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg","School of Electrical and Information Engineering and Sydney Brenner Institute for Molecular Bioscience, University of\u00a0the Witwatersrand, Johannesburg","Sydney Brenner Institute for Molecular Bioscience, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg"],"affiliations":[{"raw_affiliation_string":"School of Electrical and Information Engineering and Sydney Brenner Institute for Molecular Bioscience, University of\u00a0the Witwatersrand, Johannesburg; Sydney Brenner Institute for Molecular Bioscience, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg","institution_ids":["https://openalex.org/I192619145"]},{"raw_affiliation_string":"School of Electrical and Information Engineering and Sydney Brenner Institute for Molecular Bioscience, University of\u00a0the Witwatersrand, Johannesburg","institution_ids":["https://openalex.org/I192619145"]},{"raw_affiliation_string":"Sydney Brenner Institute for Molecular Bioscience, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg","institution_ids":["https://openalex.org/I192619145"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080377820","display_name":"Nicola Mulder","orcid":"https://orcid.org/0000-0003-4905-0941"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Nicola Mulder","raw_affiliation_strings":["Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, University of Cape Town"],"affiliations":[{"raw_affiliation_string":"Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, University of Cape Town","institution_ids":["https://openalex.org/I157614274"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5073536743"],"corresponding_institution_ids":["https://openalex.org/I157614274"],"apc_list":{"value":350,"currency":"GBP","value_usd":429},"apc_paid":{"value":350,"currency":"GBP","value_usd":429},"fwci":0.2577,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.56888647,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"18","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9843999743461609,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9721999764442444,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.5392358303070068},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49288296699523926},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.49005234241485596},{"id":"https://openalex.org/keywords/genomic-medicine","display_name":"Genomic medicine","score":0.4332273006439209},{"id":"https://openalex.org/keywords/business","display_name":"Business","score":0.4016839265823364},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.3911728858947754},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.27034586668014526},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.15647941827774048},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14499792456626892}],"concepts":[{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.5392358303070068},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49288296699523926},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.49005234241485596},{"id":"https://openalex.org/C2992545694","wikidata":"https://www.wikidata.org/wiki/Q1071953","display_name":"Genomic medicine","level":2,"score":0.4332273006439209},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.4016839265823364},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.3911728858947754},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.27034586668014526},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.15647941827774048},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14499792456626892}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.5334/dsj-2019-047","is_oa":true,"landing_page_url":"https://doi.org/10.5334/dsj-2019-047","pdf_url":"http://datascience.codata.org/articles/10.5334/dsj-2019-047/galley/894/download/","source":{"id":"https://openalex.org/S62969111","display_name":"Data Science Journal","issn_l":"1683-1470","issn":["1683-1470"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320511","host_organization_name":"Ubiquity Press","host_organization_lineage":["https://openalex.org/P4310320511"],"host_organization_lineage_names":["Ubiquity Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data Science Journal","raw_type":"journal-article"},{"id":"pmh:oai:digitalcommons.unl.edu:scholcom-1307","is_oa":false,"landing_page_url":"https://digitalcommons.unl.edu/scholcom/281","pdf_url":null,"source":{"id":"https://openalex.org/S4306513441","display_name":"Insecta mundi","issn_l":"0749-6737","issn":["0749-6737","1942-1354","1942-1362"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310316217","host_organization_name":"Center for Systematic Entomology","host_organization_lineage":["https://openalex.org/P4310316217"],"host_organization_lineage_names":["Center for Systematic Entomology"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Copyright, Fair Use, Scholarly Communication, etc.","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:f73a683d55a6409a9f9141e9efb64d97","is_oa":true,"landing_page_url":"https://doaj.org/article/f73a683d55a6409a9f9141e9efb64d97","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Data Science Journal, Vol 18, Iss 1 (2019)","raw_type":"article"},{"id":"pmh:oai:ojs.datascience.codata.org:article/951","is_oa":true,"landing_page_url":"https://datascience.codata.org/jms/article/view/dsj-2019-047","pdf_url":null,"source":{"id":"https://openalex.org/S62969111","display_name":"Data Science Journal","issn_l":"1683-1470","issn":["1683-1470"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320511","host_organization_name":"Ubiquity Press","host_organization_lineage":["https://openalex.org/P4310320511"],"host_organization_lineage_names":["Ubiquity Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Data Science Journal; Vol 18 (2019); 47","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.5334/dsj-2019-047","is_oa":true,"landing_page_url":"https://doi.org/10.5334/dsj-2019-047","pdf_url":"http://datascience.codata.org/articles/10.5334/dsj-2019-047/galley/894/download/","source":{"id":"https://openalex.org/S62969111","display_name":"Data Science Journal","issn_l":"1683-1470","issn":["1683-1470"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320511","host_organization_name":"Ubiquity Press","host_organization_lineage":["https://openalex.org/P4310320511"],"host_organization_lineage_names":["Ubiquity Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data Science Journal","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5799999833106995,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2975344155.pdf","grobid_xml":"https://content.openalex.org/works/W2975344155.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1567333450","https://openalex.org/W1721251433","https://openalex.org/W1958673254","https://openalex.org/W1993074086","https://openalex.org/W1996775628","https://openalex.org/W2002732332","https://openalex.org/W2088379928","https://openalex.org/W2103548189","https://openalex.org/W2117608012","https://openalex.org/W2159084616","https://openalex.org/W2188414616","https://openalex.org/W2196300395","https://openalex.org/W2204505768","https://openalex.org/W2531587846","https://openalex.org/W2595620420","https://openalex.org/W2612293414","https://openalex.org/W2796593612","https://openalex.org/W2800346446","https://openalex.org/W2887576581","https://openalex.org/W2900798344"],"related_works":["https://openalex.org/W1540382160","https://openalex.org/W2997480799","https://openalex.org/W3021475143","https://openalex.org/W3122971585","https://openalex.org/W2166989699","https://openalex.org/W2518615930","https://openalex.org/W2286982384","https://openalex.org/W1497976633","https://openalex.org/W1795949391","https://openalex.org/W2810834949"],"abstract_inverted_index":{"Human":[0,31],"genomic":[1,27,148,239],"data":[2,40,62,65,110,116,137,149,169,174,182,200,209,217,240],"are":[3,41],"large":[4],"and":[5,7,14,18,33,39,60,86,88,106,141,146,171,188,202],"complex,":[6],"require":[8],"adequate":[9],"infrastructure":[10,231],"for":[11,58,80,223,236],"secure":[12,84,212],"storage":[13,85],"transfer.":[15,175],"The":[16,19,50,127,176],"NIH":[17],"Wellcome":[20],"Trust":[21],"have":[22],"funded":[23],"multiple":[24],"projects":[25],"on":[26],"research,":[28],"including":[29],"the":[30,47,64,81,94,98,115,120,124,135,142,155,158,173,186,189,198,208,216,230],"Heredity":[32],"Health":[34],"in":[35,91,104,211],"Africa":[36,105],"(H3Africa)":[37],"initiative,":[38],"required":[42],"to":[43,144,150,179,225],"be":[44,90],"deposited":[45],"into":[46,218],"public":[48,151,193],"domain.":[49],"European":[51],"Genome-phenome":[52],"Archive":[53,130],"(EGA)":[54],"is":[55,67,73,131,178,210],"a":[56,76],"repository":[57],"sequence":[59],"genotype":[61],"where":[63],"access":[66,70],"controlled":[68],"by":[69,75,122],"committees.":[71],"Access":[72],"determined":[74],"formal":[77],"application":[78],"procedure":[79],"purpose":[82],"of":[83,97,119,157],"distribution,":[87],"must":[89],"line":[92],"with":[93,168,197],"informed":[95],"consent":[96],"study":[99],"participants.":[100],"H3Africa":[101,128,136,159,199],"researchers":[102],"based":[103],"generating":[107,138],"their":[108],"own":[109],"can":[111],"benefit":[112],"tremendously":[113],"from":[114],"sharing":[117,201],"capabilities":[118],"internet":[121],"using":[123],"appropriate":[125],"technologies.":[126],"Data":[129,160],"an":[132,219],"effort":[133],"between":[134,184],"projects,":[139],"H3ABioNet":[140,153,214],"EGA":[143,190],"store":[145],"submit":[147],"repositories.":[152,194],"maintains":[154],"security":[156,164],"Archive,":[161],"ensures":[162],"ethical":[163],"compliance,":[165],"supports":[166],"users":[167],"submission":[170,224],"facilitates":[172],"goal":[177],"ensure":[180],"efficient":[181],"flow":[183],"researchers,":[185],"archive":[187],"or":[191],"other":[192],"To":[195],"comply":[196],"release":[203],"policy,":[204],"nine":[205],"months":[206],"after":[207],"storage,":[213],"converts":[215],"XML":[220],"format":[221],"ready":[222],"EGA.":[226],"This":[227],"article":[228],"describes":[229],"that":[232],"has":[233],"been":[234],"developed":[235],"African":[237],"human":[238],"management.":[241]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
