{"id":"https://openalex.org/W2627727638","doi":"https://doi.org/10.5334/dsj-2017-045","title":"A Semantic Cross-Species Derived Data Management Application","display_name":"A Semantic Cross-Species Derived Data Management Application","publication_year":2017,"publication_date":"2017-09-20","ids":{"openalex":"https://openalex.org/W2627727638","doi":"https://doi.org/10.5334/dsj-2017-045","mag":"2627727638"},"language":"en","primary_location":{"id":"doi:10.5334/dsj-2017-045","is_oa":true,"landing_page_url":"https://doi.org/10.5334/dsj-2017-045","pdf_url":"http://datascience.codata.org/articles/10.5334/dsj-2017-045/galley/717/download/","source":{"id":"https://openalex.org/S62969111","display_name":"Data Science Journal","issn_l":"1683-1470","issn":["1683-1470"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320511","host_organization_name":"Ubiquity Press","host_organization_lineage":["https://openalex.org/P4310320511"],"host_organization_lineage_names":["Ubiquity Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data Science Journal","raw_type":"journal-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"http://datascience.codata.org/articles/10.5334/dsj-2017-045/galley/717/download/","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090453718","display_name":"David B. Keator","orcid":"https://orcid.org/0000-0001-5281-5576"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David B. Keator","raw_affiliation_strings":["University of California Irvine, Irvine CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California Irvine, Irvine CA","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011540620","display_name":"Jinran Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jinran Chen","raw_affiliation_strings":["University of California Irvine, Irvine CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California Irvine, Irvine CA","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037158865","display_name":"B. Nolan Nichols","orcid":"https://orcid.org/0000-0003-1099-3328"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nolan Nichols","raw_affiliation_strings":["Genentech Inc South San Francisco CA","Genentech Inc., South San Francisco, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genentech Inc South San Francisco CA","institution_ids":[]},{"raw_affiliation_string":"Genentech Inc., South San Francisco, CA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033552919","display_name":"Fariba Fana","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fariba Fana","raw_affiliation_strings":["University of California, San Diego","University of California\u2014San Diego"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California, San Diego","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"University of California\u2014San Diego","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028304550","display_name":"Hal S. Stern","orcid":"https://orcid.org/0000-0002-5657-2820"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hal Stern","raw_affiliation_strings":["University of California Irvine, Irvine CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California Irvine, Irvine CA","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051388310","display_name":"Tallie Z. Baram","orcid":"https://orcid.org/0000-0003-0771-8616"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tallie Z. Baram","raw_affiliation_strings":["University of California Irvine, Irvine CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California Irvine, Irvine CA","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019644135","display_name":"Steven L. Small","orcid":"https://orcid.org/0000-0002-5293-6172"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven L. Small","raw_affiliation_strings":["University of California Irvine, Irvine CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California Irvine, Irvine CA","institution_ids":["https://openalex.org/I204250578"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":350,"currency":"GBP","value_usd":429},"apc_paid":{"value":350,"currency":"GBP","value_usd":429},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09363206,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"16","issue":"0","first_page":"45","last_page":"45"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.930400013923645,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.930400013923645,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7282254099845886},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.657009482383728},{"id":"https://openalex.org/keywords/usable","display_name":"USable","score":0.6278509497642517},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.5540468096733093},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.5113553404808044},{"id":"https://openalex.org/keywords/neuroinformatics","display_name":"Neuroinformatics","score":0.43333572149276733},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3444632589817047},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.3250468969345093},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.18351256847381592}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7282254099845886},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.657009482383728},{"id":"https://openalex.org/C2780615836","wikidata":"https://www.wikidata.org/wiki/Q2471869","display_name":"USable","level":2,"score":0.6278509497642517},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.5540468096733093},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.5113553404808044},{"id":"https://openalex.org/C205427263","wikidata":"https://www.wikidata.org/wiki/Q1931480","display_name":"Neuroinformatics","level":2,"score":0.43333572149276733},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3444632589817047},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.3250468969345093},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.18351256847381592}],"mesh":[],"locations_count":9,"locations":[{"id":"doi:10.5334/dsj-2017-045","is_oa":true,"landing_page_url":"https://doi.org/10.5334/dsj-2017-045","pdf_url":"http://datascience.codata.org/articles/10.5334/dsj-2017-045/galley/717/download/","source":{"id":"https://openalex.org/S62969111","display_name":"Data Science Journal","issn_l":"1683-1470","issn":["1683-1470"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320511","host_organization_name":"Ubiquity Press","host_organization_lineage":["https://openalex.org/P4310320511"],"host_organization_lineage_names":["Ubiquity Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data Science Journal","raw_type":"journal-article"},{"id":"pmh:oai:arXiv.org:1706.07835","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1706.07835","pdf_url":"https://arxiv.org/pdf/1706.07835","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:doaj.org/article:45fbb2dc73b74095a9a552f0f53154df","is_oa":true,"landing_page_url":"https://doaj.org/article/45fbb2dc73b74095a9a552f0f53154df","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Data Science Journal, Vol 16 (2017)","raw_type":"article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt59b8f0df","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/59b8f0df","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Data Science Journal, vol 16, iss 0","raw_type":"article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt63q929gp","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/63q929gp","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:ojs.datascience.codata.org:article/729","is_oa":true,"landing_page_url":"https://datascience.codata.org/jms/article/view/dsj-2017-045","pdf_url":null,"source":{"id":"https://openalex.org/S62969111","display_name":"Data Science Journal","issn_l":"1683-1470","issn":["1683-1470"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320511","host_organization_name":"Ubiquity Press","host_organization_lineage":["https://openalex.org/P4310320511"],"host_organization_lineage_names":["Ubiquity Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Data Science Journal; Vol 16 (2017); 45","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:qt59b8f0df","is_oa":true,"landing_page_url":"http://www.escholarship.org/uc/item/59b8f0df","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Keator, DB; Chen, J; Nichols, N; Fana, F; Stern, H; Baram, TZ; \u00c2\u00a0et al.(2017). A semantic cross-species derived data management application. Data Science Journal, 16. doi: 10.5334/dsj-2017-045. UC Irvine: Retrieved from: http://www.escholarship.org/uc/item/59b8f0df","raw_type":"article"},{"id":"doi:10.48550/arxiv.1706.07835","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1706.07835","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"},{"id":"mag:2627727638","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.5334/dsj-2017-045","is_oa":true,"landing_page_url":"https://doi.org/10.5334/dsj-2017-045","pdf_url":"http://datascience.codata.org/articles/10.5334/dsj-2017-045/galley/717/download/","source":{"id":"https://openalex.org/S62969111","display_name":"Data Science Journal","issn_l":"1683-1470","issn":["1683-1470"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320511","host_organization_name":"Ubiquity Press","host_organization_lineage":["https://openalex.org/P4310320511"],"host_organization_lineage_names":["Ubiquity Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data Science Journal","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6700000166893005,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W361253298","https://openalex.org/W1562548864","https://openalex.org/W1858367097","https://openalex.org/W1981952719","https://openalex.org/W1998847686","https://openalex.org/W2007932593","https://openalex.org/W2013632767","https://openalex.org/W2039988399","https://openalex.org/W2100086239","https://openalex.org/W2963232910","https://openalex.org/W4254495278"],"related_works":["https://openalex.org/W2963243189","https://openalex.org/W2146144840","https://openalex.org/W2288133208","https://openalex.org/W2311972864","https://openalex.org/W3013289937","https://openalex.org/W2968635384","https://openalex.org/W316498708","https://openalex.org/W2044006111","https://openalex.org/W2471189955","https://openalex.org/W2125058961","https://openalex.org/W1969455928","https://openalex.org/W2611408888","https://openalex.org/W2004541738","https://openalex.org/W2973213948","https://openalex.org/W2016615049","https://openalex.org/W2531093471","https://openalex.org/W181364620","https://openalex.org/W2566516846","https://openalex.org/W2947030891","https://openalex.org/W2753841461"],"abstract_inverted_index":{"<p":[0],"class=\"p1\">Managing":[1],"dynamic":[2],"information":[3,236],"in":[4,20,67,99,167,181],"large":[5],"multi-site,":[6],"multi-species,":[7],"and":[8,40,57,71,106,124,164,170,178,183,197,233,246],"multi-discipline":[9],"consortia":[10,53],"is":[11,95,147],"a":[12,68,127,149,228],"challenging":[13],"task":[14],"for":[15,26,84],"data":[16,43,66,89,102,111,129,220],"management":[17,130,237],"applications.":[18],"Often":[19],"academic":[21],"research":[22,50,116,242],"studies":[23],"the":[24,49,82,101,110,121,134,140,152,187,205,213,240,248],"goals":[25],"informatics":[27],"teams":[28,243],"are":[29],"to":[30,38,75,108,132,185,218,231,244],"build":[31],"applications":[32],"that":[33,44,54],"provide":[34],"extract-transform-load":[35],"(ETL)":[36],"functionality":[37],"archive":[39],"catalog":[41],"source":[42,88],"has":[45],"been":[46],"collected":[47],"by":[48],"teams.":[51,117],"In":[52],"cross":[55],"species":[56],"methodological":[58],"or":[59],"scientific":[60,93],"domains,":[61],"building":[62],"interfaces":[63],"which":[64],"supply":[65],"usable":[69],"fashion":[70],"make":[72],"intuitive":[73],"sense":[74],"scientists":[76],"from":[77,90,114],"dramatically":[78],"different":[79],"backgrounds":[80],"increases":[81],"complexity":[83],"developers.":[85],"Further,":[86],"reusing":[87],"outside":[91],"one\u2019s":[92],"domain":[94],"fraught":[96],"with":[97,112],"ambiguities":[98],"understanding":[100],"types,":[103],"analysis":[104],"methodologies,":[105],"how":[107],"combine":[109],"those":[113],"other":[115],"We":[118,223],"report":[119],"on":[120,161,194,212],"design,":[122],"implementation,":[123],"performance":[125],"of":[126,142,151,154,190],"semantic":[128,208],"application":[131],"support":[133],"NIMH":[135],"funded":[136],"Conte":[137],"Center":[138,146],"at":[139],"University":[141],"California,":[143],"Irvine.":[144],"The":[145],"testing":[148],"theory":[150],"consequences":[153,189],"\u201cfragmented\u201d":[155],"(unpredictable,":[156],"high":[157],"entropy)":[158],"early-life":[159],"experiences":[160],"adolescent":[162],"cognitive":[163],"emotional":[165],"outcomes":[166],"both":[168],"humans":[169,182],"rodents.":[171],"It":[172],"employs":[173],"cross-species":[174],"neuroimaging,":[175],"epigenomic,":[176],"molecular,":[177],"neuroanatomical":[179],"approaches":[180],"rodents":[184],"assess":[186],"potential":[188],"fragmented":[191],"unpredictable":[192],"experience":[193],"brain":[195],"structure":[196],"circuitry.":[198],"To":[199],"address":[200],"this":[201,225],"multi-technology,":[202],"multi-species":[203],"approach,":[204],"system":[206],"uses":[207],"web":[209],"techniques":[210],"based":[211],"Neuroimaging":[214],"Data":[215],"Model":[216],"(NIDM)":[217],"facilitate":[219],"ETL":[221],"functionality.":[222],"find":[224],"approach":[226],"enables":[227],"low-cost,":[229],"easy":[230],"maintain,":[232],"semantically":[234],"meaningful":[235],"system,":[238],"enabling":[239],"diverse":[241],"access":[245],"use":[247],"data.":[249]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
