{"id":"https://openalex.org/W4393563335","doi":"https://doi.org/10.5281/zenodo.8422007","title":"Evaluation dataset for Relation Extraction of relationships between Organisms and Natural-Products","display_name":"Evaluation dataset for Relation Extraction of relationships between Organisms and Natural-Products","publication_year":2023,"publication_date":"2023-10-09","ids":{"openalex":"https://openalex.org/W4393563335","doi":"https://doi.org/10.5281/zenodo.8422007"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.8422007","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.8422007","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.8422007","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016561885","display_name":"Magdalena Wysocka","orcid":"https://orcid.org/0000-0003-2216-5597"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I4210129527","display_name":"Cancer Research UK Manchester Institute","ror":"https://ror.org/037405c78","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2801316944","https://openalex.org/I4210129527"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Magdalena Wysocka","raw_affiliation_strings":["dECMT, Cancer Research UK Manchester Institute; The University of Manchester"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"dECMT, Cancer Research UK Manchester Institute; The University of Manchester","institution_ids":["https://openalex.org/I28407311","https://openalex.org/I4210129527"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076973287","display_name":"Maxime Delmas","orcid":"https://orcid.org/0000-0002-9352-0624"},"institutions":[{"id":"https://openalex.org/I7495430","display_name":"Idiap Research Institute","ror":"https://ror.org/05932h694","country_code":"CH","type":"facility","lineage":["https://openalex.org/I7495430"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Maxime Delmas","raw_affiliation_strings":["Idiap Research Institute"],"raw_orcid":"https://orcid.org/0000-0002-9352-0624","affiliations":[{"raw_affiliation_string":"Idiap Research Institute","institution_ids":["https://openalex.org/I7495430"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053978668","display_name":"Andr\u00e9 Freitas","orcid":"https://orcid.org/0000-0002-4430-4837"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I7495430","display_name":"Idiap Research Institute","ror":"https://ror.org/05932h694","country_code":"CH","type":"facility","lineage":["https://openalex.org/I7495430"]}],"countries":["CH","GB"],"is_corresponding":false,"raw_author_name":"Andre Freitas","raw_affiliation_strings":["The University of Manchester; Idiap Research Institute"],"raw_orcid":"https://orcid.org/0000-0002-4430-4837","affiliations":[{"raw_affiliation_string":"The University of Manchester; Idiap Research Institute","institution_ids":["https://openalex.org/I28407311","https://openalex.org/I7495430"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.8141999840736389,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.8141999840736389,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12388","display_name":"Identification and Quantification in Food","score":0.7383000254631042,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10640","display_name":"Spectroscopy and Chemometric Analyses","score":0.6729000210762024,"subfield":{"id":"https://openalex.org/subfields/1602","display_name":"Analytical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.7655131816864014},{"id":"https://openalex.org/keywords/natural","display_name":"Natural (archaeology)","score":0.702730119228363},{"id":"https://openalex.org/keywords/extraction","display_name":"Extraction (chemistry)","score":0.5674738883972168},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.45802199840545654},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2813917398452759},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.26953190565109253},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.20635327696800232},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.1960485577583313},{"id":"https://openalex.org/keywords/archaeology","display_name":"Archaeology","score":0.10891538858413696},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.10435423254966736}],"concepts":[{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.7655131816864014},{"id":"https://openalex.org/C2776608160","wikidata":"https://www.wikidata.org/wiki/Q4785462","display_name":"Natural (archaeology)","level":2,"score":0.702730119228363},{"id":"https://openalex.org/C4725764","wikidata":"https://www.wikidata.org/wiki/Q844704","display_name":"Extraction (chemistry)","level":2,"score":0.5674738883972168},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.45802199840545654},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2813917398452759},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.26953190565109253},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.20635327696800232},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.1960485577583313},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.10891538858413696},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.10435423254966736}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.8422007","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.8422007","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.8422007","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.8422007","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2976808399","https://openalex.org/W2609844752","https://openalex.org/W2981341912","https://openalex.org/W4285246823","https://openalex.org/W4226278302","https://openalex.org/W4385734297","https://openalex.org/W2547211086","https://openalex.org/W4221160509","https://openalex.org/W4380551175","https://openalex.org/W2538200646"],"abstract_inverted_index":{"A":[0,62,80,136],"curated":[1],"evaluation":[2],"dataset":[3],"for":[4,65],"end-to-end":[5],"Relation":[6],"Extraction":[7],"of":[8,38,58,175],"relationships":[9],"between":[10],"organisms":[11],"and":[12,36,82,89,119],"natural-products.":[13],"Details":[14],"about":[15],"the":[16,30,56,59,78,104,110,121,131,148,156,161,166,178],"manual":[17],"annotation:":[18],"For":[19,93,153],"Chemicals:":[20],"The":[21,47,95],"chemical":[22,66],"labels":[23,97],"are":[24,98,163,170],"annotated":[25,99],"as":[26,100],"they":[27,101],"appear":[28,102],"in":[29,77,103,107,160,165,172,177],"abstract.":[31,79,105,179],"In":[32,144],"abstracts,":[33,146],"singular":[34],"chemicals":[35,39,88],"classes":[37,90],"produced":[40],"by":[41],"a":[42],"specific":[43],"organism":[44,96],"were":[45,85],"distinguished.":[46],"\"type\"":[48],"attribute":[49,64],"{\u201cchemical\u201d,":[50],"\u201cclass\u201d}":[51],"is":[52,75,127,134,151],"used":[53],"to":[54,87,141],"indicate":[55],"nature":[57],"mentioned":[60,159],"name.":[61],"\"class\"":[63],"entities":[67],"has":[68],"also":[69],"been":[70],"included":[71],"if":[72],"class":[73],"information":[74],"present":[76],"Wikidata":[81,137],"PubChem":[83],"identifiers":[84],"assigned":[86,140],"when":[91],"available.":[92],"Organisms:":[94],"If":[106],"an":[108],"abstract,":[109],"genus":[111,149],"name":[112,123,133,150],"was":[113,139],"mention":[114],"first,":[115],"e.g.":[116],"\"Plakinastrella":[117,125],"sp.\"":[118],"then":[120,129],"specie":[122,132],"e.g":[124],"clathrata\"":[126],"precise,":[128],"only":[130,147],"used.":[135],"identifier":[138],"all":[142],"organisms.":[143],"some":[145],"mentioned.":[152],"Relations:":[154],"Only":[155],"relations":[157],"explicitly":[158],"abstract":[162],"reported":[164,171],"output":[167],"labels.":[168],"Relations":[169],"their":[173],"order":[174],"appearance":[176]},"counts_by_year":[],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
