{"id":"https://openalex.org/W4393842347","doi":"https://doi.org/10.5281/zenodo.8384983","title":"ECOD Classification of AFDB 48 Proteomes","display_name":"ECOD Classification of AFDB 48 Proteomes","publication_year":2023,"publication_date":"2023-09-28","ids":{"openalex":"https://openalex.org/W4393842347","doi":"https://doi.org/10.5281/zenodo.8384983"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:8384983","is_oa":true,"landing_page_url":"https://zenodo.org/record/8384983","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/8384983","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025471816","display_name":"R. Dustin Schaeffer","orcid":"https://orcid.org/0000-0001-6502-1425"},"institutions":[{"id":"https://openalex.org/I4388891891","display_name":"Southwestern Medical Center","ror":"https://ror.org/05d80e146","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I4388891891"]},{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Schaeffer, R. Dustin","raw_affiliation_strings":["University of Texas Southwestern Medical Center"],"raw_orcid":"https://orcid.org/0000-0001-6502-1425","affiliations":[{"raw_affiliation_string":"University of Texas Southwestern Medical Center","institution_ids":["https://openalex.org/I4388891891","https://openalex.org/I867280407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100601932","display_name":"Jing Zhang","orcid":"https://orcid.org/0000-0003-4190-3065"},"institutions":[{"id":"https://openalex.org/I4388891891","display_name":"Southwestern Medical Center","ror":"https://ror.org/05d80e146","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I4388891891"]},{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhang, Jing","raw_affiliation_strings":["University of Texas Southwestern Medical Center"],"raw_orcid":"https://orcid.org/0000-0003-4190-3065","affiliations":[{"raw_affiliation_string":"University of Texas Southwestern Medical Center","institution_ids":["https://openalex.org/I4388891891","https://openalex.org/I867280407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060415648","display_name":"Kirill E. Medvedev","orcid":"https://orcid.org/0000-0002-7982-4242"},"institutions":[{"id":"https://openalex.org/I4388891891","display_name":"Southwestern Medical Center","ror":"https://ror.org/05d80e146","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I4388891891"]},{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Medvedev, Kirill E.","raw_affiliation_strings":["University of Texas Southwestern Medical Center"],"raw_orcid":"https://orcid.org/0000-0002-7982-4242","affiliations":[{"raw_affiliation_string":"University of Texas Southwestern Medical Center","institution_ids":["https://openalex.org/I4388891891","https://openalex.org/I867280407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039591575","display_name":"Qian Cong","orcid":"https://orcid.org/0000-0002-8909-0414"},"institutions":[{"id":"https://openalex.org/I4388891891","display_name":"Southwestern Medical Center","ror":"https://ror.org/05d80e146","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I4388891891"]},{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cong, Qian","raw_affiliation_strings":["University of Texas Southwestern Medical Center"],"raw_orcid":"https://orcid.org/0000-0002-8909-0414","affiliations":[{"raw_affiliation_string":"University of Texas Southwestern Medical Center","institution_ids":["https://openalex.org/I4388891891","https://openalex.org/I867280407"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5106497440","display_name":"Nick V. Grishin","orcid":"https://orcid.org/0000-0003-4108-1153"},"institutions":[{"id":"https://openalex.org/I4388891891","display_name":"Southwestern Medical Center","ror":"https://ror.org/05d80e146","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I4388891891"]},{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Grishin, Nick V.","raw_affiliation_strings":["University of Texas Southwestern Medical Center"],"raw_orcid":"https://orcid.org/0000-0003-4108-1153","affiliations":[{"raw_affiliation_string":"University of Texas Southwestern Medical Center","institution_ids":["https://openalex.org/I4388891891","https://openalex.org/I867280407"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.6725999712944031,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.6725999712944031,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.46930578351020813},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3443666100502014},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.33224058151245117},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.10276097059249878}],"concepts":[{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.46930578351020813},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3443666100502014},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33224058151245117},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.10276097059249878}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:zenodo.org:8384983","is_oa":true,"landing_page_url":"https://zenodo.org/record/8384983","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},{"id":"doi:10.5281/zenodo.8384983","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.8384983","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:8384983","is_oa":true,"landing_page_url":"https://zenodo.org/record/8384983","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2316833920","https://openalex.org/W4377098514","https://openalex.org/W2970701885","https://openalex.org/W2290118617","https://openalex.org/W1975345997","https://openalex.org/W4387564043","https://openalex.org/W2019197244","https://openalex.org/W2054792938","https://openalex.org/W2967223254","https://openalex.org/W4234452205"],"abstract_inverted_index":{"ECOD":[0],"domains":[1],"classified":[2,13],"for":[3,17],"the":[4],"48":[5],"whole":[6],"proteomes":[7],"(model_v4)":[8],"from":[9],"AFDB.":[10],"Domains":[11],"were":[12],"using":[14],"Domain":[15],"Parser":[16],"Alphafold":[18],"Models.":[19]},"counts_by_year":[],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
