{"id":"https://openalex.org/W6968968368","doi":"https://doi.org/10.5281/zenodo.8346391","title":"SMITE: Single Molecule Imaging Toolbox Extraordinaire (MATLAB)","display_name":"SMITE: Single Molecule Imaging Toolbox Extraordinaire (MATLAB)","publication_year":2023,"publication_date":"2023-09-14","ids":{"openalex":"https://openalex.org/W6968968368","doi":"https://doi.org/10.5281/zenodo.8346391"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:8346391","is_oa":true,"landing_page_url":"https://zenodo.org/record/8346391","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"type":"other","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/8346391","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Schodt, David J.","orcid":"https://orcid.org/0000-0002-8986-2736"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Schodt, David J.","raw_affiliation_strings":["Department of Physics and Astronomy, University of New Mexico"],"affiliations":[{"raw_affiliation_string":"Department of Physics and Astronomy, University of New Mexico","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Wester, Michael J.","orcid":"https://orcid.org/0000-0002-3520-7605"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wester, Michael J.","raw_affiliation_strings":["Department of Physics and Astronomy, University of New Mexico"],"affiliations":[{"raw_affiliation_string":"Department of Physics and Astronomy, University of New Mexico","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Fazel, Mohamadreza","orcid":"https://orcid.org/0000-0002-6215-1336"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fazel, Mohamadreza","raw_affiliation_strings":["Department of Physics and Astronomy, University of New Mexico"],"affiliations":[{"raw_affiliation_string":"Department of Physics and Astronomy, University of New Mexico","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Khan, Sajjad","orcid":"https://orcid.org/0000-0002-6910-5199"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Khan, Sajjad","raw_affiliation_strings":["Department of Physics and Astronomy, University of New Mexico"],"affiliations":[{"raw_affiliation_string":"Department of Physics and Astronomy, University of New Mexico","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Mazloom-Farsibaf, Hanieh","orcid":"https://orcid.org/0000-0002-2571-0418"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mazloom-Farsibaf, Hanieh","raw_affiliation_strings":["Department of Physics and Astronomy, University of New Mexico"],"affiliations":[{"raw_affiliation_string":"Department of Physics and Astronomy, University of New Mexico","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Pallikkuth, Sandeep","orcid":"https://orcid.org/0009-0003-0400-6389"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pallikkuth, Sandeep","raw_affiliation_strings":["Department of Physics and Astronomy, University of New Mexico"],"affiliations":[{"raw_affiliation_string":"Department of Physics and Astronomy, University of New Mexico","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Meddens, Marjolein B. M.","orcid":"https://orcid.org/0000-0002-9965-1342"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Meddens, Marjolein B. M.","raw_affiliation_strings":["Department of Physics and Astronomy, University of New Mexico"],"affiliations":[{"raw_affiliation_string":"Department of Physics and Astronomy, University of New Mexico","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Farzam, Farzin","orcid":"https://orcid.org/0000-0002-9939-1923"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Farzam, Farzin","raw_affiliation_strings":["Department of Physics and Astronomy, University of New Mexico"],"affiliations":[{"raw_affiliation_string":"Department of Physics and Astronomy, University of New Mexico","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Burns, Eric A.","orcid":"https://orcid.org/0000-0002-1625-2400"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Burns, Eric A.","raw_affiliation_strings":["Department of Pathology, University of New Mexico Health Sciences Center"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, University of New Mexico Health Sciences Center","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Kanagy, William K.","orcid":"https://orcid.org/0000-0002-5756-9965"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kanagy, William K.","raw_affiliation_strings":["Department of Pathology, University of New Mexico Health Sciences Center"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, University of New Mexico Health Sciences Center","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Rinaldi, Derek A.","orcid":"https://orcid.org/0009-0000-8394-3626"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rinaldi, Derek A.","raw_affiliation_strings":["Department of Pathology, University of New Mexico Health Sciences Center"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, University of New Mexico Health Sciences Center","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jhamba, Elton","orcid":"https://orcid.org/0000-0002-5272-6466"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jhamba, Elton","raw_affiliation_strings":["Department of Pathology, University of New Mexico Health Sciences Center"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, University of New Mexico Health Sciences Center","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Liu, Sheng","orcid":"https://orcid.org/0000-0003-1225-0763"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liu, Sheng","raw_affiliation_strings":["Department of Physics and Astronomy, University of New Mexico"],"affiliations":[{"raw_affiliation_string":"Department of Physics and Astronomy, University of New Mexico","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Relich, Peter K.","orcid":"https://orcid.org/0000-0002-6063-6233"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Relich, Peter K.","raw_affiliation_strings":["Department of Physics and Astronomy, University of New Mexico"],"affiliations":[{"raw_affiliation_string":"Department of Physics and Astronomy, University of New Mexico","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Olah, Mark J.","orcid":null},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Olah, Mark J.","raw_affiliation_strings":["Department of Physics and Astronomy, University of New Mexico"],"affiliations":[{"raw_affiliation_string":"Department of Physics and Astronomy, University of New Mexico","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Steinberg, Stanly L.","orcid":null},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steinberg, Stanly L.","raw_affiliation_strings":["Department of Mathematics and Statistics, University of New Mexico"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of New Mexico","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"last","author":{"id":null,"display_name":"Lidke, Keith A.","orcid":"https://orcid.org/0000-0002-9328-4318"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lidke, Keith A.","raw_affiliation_strings":["Department of Physics and Astronomy, University of New Mexico"],"affiliations":[{"raw_affiliation_string":"Department of Physics and Astronomy, University of New Mexico","institution_ids":["https://openalex.org/I169521973"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":17,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I169521973"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":{"id":"https://openalex.org/T12150","display_name":"Intestinal Malrotation and Obstruction Disorders","score":0.8091999888420105,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12150","display_name":"Intestinal Malrotation and Obstruction Disorders","score":0.8091999888420105,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11586","display_name":"Congenital Diaphragmatic Hernia Studies","score":0.03790000081062317,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10671","display_name":"Gastroesophageal reflux and treatments","score":0.033900000154972076,"subfield":{"id":"https://openalex.org/subfields/2715","display_name":"Gastroenterology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.7053999900817871},{"id":"https://openalex.org/keywords/tracking","display_name":"Tracking (education)","score":0.47850000858306885},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.4593000113964081},{"id":"https://openalex.org/keywords/single-molecule-experiment","display_name":"Single-molecule experiment","score":0.4433000087738037},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.421999990940094},{"id":"https://openalex.org/keywords/particle","display_name":"Particle (ecology)","score":0.362199991941452}],"concepts":[{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.7053999900817871},{"id":"https://openalex.org/C2775936607","wikidata":"https://www.wikidata.org/wiki/Q466845","display_name":"Tracking (education)","level":2,"score":0.47850000858306885},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.4593000113964081},{"id":"https://openalex.org/C199191878","wikidata":"https://www.wikidata.org/wiki/Q6504739","display_name":"Single-molecule experiment","level":3,"score":0.4433000087738037},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.4327999949455261},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.421999990940094},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4146000146865845},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.3747999966144562},{"id":"https://openalex.org/C2778517922","wikidata":"https://www.wikidata.org/wiki/Q7140482","display_name":"Particle (ecology)","level":2,"score":0.362199991941452},{"id":"https://openalex.org/C169274487","wikidata":"https://www.wikidata.org/wiki/Q840211","display_name":"Fluorescence microscope","level":3,"score":0.353300005197525},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.35280001163482666},{"id":"https://openalex.org/C116919411","wikidata":"https://www.wikidata.org/wiki/Q1522462","display_name":"Photoactivated localization microscopy","level":5,"score":0.3449999988079071},{"id":"https://openalex.org/C136339569","wikidata":"https://www.wikidata.org/wiki/Q1142297","display_name":"Molecular imaging","level":3,"score":0.2784999907016754},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.2750000059604645},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.2623000144958496},{"id":"https://openalex.org/C31601959","wikidata":"https://www.wikidata.org/wiki/Q931309","display_name":"Medical imaging","level":2,"score":0.26100000739097595},{"id":"https://openalex.org/C96305047","wikidata":"https://www.wikidata.org/wiki/Q367473","display_name":"F\u00f6rster resonance energy transfer","level":3,"score":0.2533999979496002},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.25099998712539673}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:zenodo.org:8346391","is_oa":true,"landing_page_url":"https://zenodo.org/record/8346391","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},{"id":"doi:10.5281/zenodo.8346391","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.8346391","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:8346391","is_oa":true,"landing_page_url":"https://zenodo.org/record/8346391","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"This":[0],"MATLAB-based":[1],"toolbox":[2],"provides":[3],"analysis":[4],"tools":[5],"for":[6],"fluorescence":[7],"single":[8,15,21],"molecule":[9,16],"imaging":[10],"with":[11],"an":[12],"emphasis":[13],"on":[14],"localization":[17],"microscopy":[18],"(SMLM)":[19],"and":[20],"particle":[22],"tracking":[23],"(SPT).":[24]},"counts_by_year":[],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}