{"id":"https://openalex.org/W4393514533","doi":"https://doi.org/10.5281/zenodo.8226152","title":"The Role of Criptic Ancestral Symmetry In Histone Folding Mechanisms Across Eukarya and Archaea","display_name":"The Role of Criptic Ancestral Symmetry In Histone Folding Mechanisms Across Eukarya and Archaea","publication_year":2023,"publication_date":"2023-08-15","ids":{"openalex":"https://openalex.org/W4393514533","doi":"https://doi.org/10.5281/zenodo.8226152"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:8226152","is_oa":true,"landing_page_url":"https://zenodo.org/record/8226152","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/8226152","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029029674","display_name":"Haiqing Zhao","orcid":"https://orcid.org/0000-0003-1168-5730"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Zhao, Haiqing","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-1168-5730","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007728924","display_name":"Wu Hao","orcid":"https://orcid.org/0000-0001-7748-737X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wu, Hao","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-7748-737X","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043994429","display_name":"Alex J. Guseman","orcid":"https://orcid.org/0000-0002-9796-5719"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Guseman, Alex","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086179536","display_name":"Dulith Abeykoon","orcid":"https://orcid.org/0000-0001-5207-7577"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dulith Abeykoon","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088475022","display_name":"Christina M. Camara","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Camara, Christina M.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005357908","display_name":"Yamini Dalal","orcid":"https://orcid.org/0000-0002-7655-6182"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dalal, Yamini","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001283984","display_name":"David Fushman","orcid":"https://orcid.org/0000-0002-6634-8056"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Fushman, David","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5008042705","display_name":"Garegin A. Papoian","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Papoian, Garegin A.","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-8580-3790","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5029029674"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/archaea","display_name":"Archaea","score":0.9019182920455933},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.54132479429245},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.4766151010990143},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4747779071331024},{"id":"https://openalex.org/keywords/histone","display_name":"Histone","score":0.44679901003837585},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3885428011417389},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33187296986579895},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.1749836504459381},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07196405529975891},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.058759450912475586}],"concepts":[{"id":"https://openalex.org/C550995028","wikidata":"https://www.wikidata.org/wiki/Q10872","display_name":"Archaea","level":3,"score":0.9019182920455933},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.54132479429245},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4766151010990143},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4747779071331024},{"id":"https://openalex.org/C64927066","wikidata":"https://www.wikidata.org/wiki/Q36293","display_name":"Histone","level":3,"score":0.44679901003837585},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3885428011417389},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33187296986579895},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.1749836504459381},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07196405529975891},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.058759450912475586},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:zenodo.org:8226152","is_oa":true,"landing_page_url":"https://zenodo.org/record/8226152","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},{"id":"doi:10.5281/zenodo.8226152","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.8226152","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:8226152","is_oa":true,"landing_page_url":"https://zenodo.org/record/8226152","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W1607298653","https://openalex.org/W4240162843","https://openalex.org/W2006696969","https://openalex.org/W1510349474","https://openalex.org/W2142984901","https://openalex.org/W150190154","https://openalex.org/W4253855002","https://openalex.org/W2373346928","https://openalex.org/W1766380752","https://openalex.org/W2275638709"],"abstract_inverted_index":{"The":[0,31,81],"shown":[1],"folders":[2],"contain":[3],"the":[4,14,35,49,56,60,68,72,87,91,96,100,105,125,137,157],"molecular":[5],"dynamics":[6],"simulation":[7,32,39],"data,":[8],"used":[9,102],"tools,":[10],"and":[11,29,38,44,59,83,99],"scripts":[12,84,101],"for":[13,41],"study":[15],"of":[16,19,90],"\"The":[17],"Role":[18],"Criptic":[20],"Ancestral":[21],"Symmetry":[22],"In":[23],"Histone":[24],"Folding":[25],"Mechanisms":[26],"Across":[27],"Eukarya":[28],"Archaea\".":[30],"data":[33,50,150],"includes":[34,86],"force":[36],"field":[37],"setup":[40],"both":[42],"AWSEM-MD":[43],"atomistic":[45],"MD":[46],"in":[47,55,95],"OpenMM,":[48],"analyses":[51],"that":[52],"are":[53,76],"presented":[54],"related":[57],"paper,":[58],"representative":[61],"conformations":[62],"from":[63],"each":[64],"simulation.":[65],"Due":[66],"to":[67,103,116,130,142,155],"large":[69],"file":[70],"size,":[71],"original":[73],"trajectory":[74],"files":[75],"available":[77],"upon":[78],"separate":[79],"request.":[80],"tools":[82],"folder":[85],"specific":[88],"version":[89],"AWSEM":[92,112],"model,":[93,113],"implemented":[94],"LAMMPS":[97,126],"package,":[98,127,139],"analyze":[104],"simulations.":[106],"For":[107,120,132,144],"detailed":[108,121,133],"instructions":[109,122,134],"on":[110,123,135],"using":[111,124,136,148],"please":[114,128,140,152],"refer":[115,129,141],"our":[117],"Github:":[118],"https://github.com/adavtyan/awsemmd/wiki.":[119],"https://www.lammps.org/#gsc.tab=0.":[131],"OpenMM":[138],"https://openmm.org/.":[143],"any":[145],"questions":[146],"about":[147],"this":[149],"repository,":[151],"feel":[153],"free":[154],"contact":[156],"author.":[158]},"counts_by_year":[],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
