{"id":"https://openalex.org/W6950307717","doi":"https://doi.org/10.5281/zenodo.8123833","title":"Supporting data and code for \"Data-driven recombination detection in viral genomes\"","display_name":"Supporting data and code for \"Data-driven recombination detection in viral genomes\"","publication_year":2023,"publication_date":"2023-07-07","ids":{"openalex":"https://openalex.org/W6950307717","doi":"https://doi.org/10.5281/zenodo.8123833"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:8123833","is_oa":true,"landing_page_url":"https://zenodo.org/record/8123833","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"type":"other","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/8123833","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Alfonsi, Tommaso","orcid":"https://orcid.org/0000-0002-4707-8425"},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Alfonsi, Tommaso","raw_affiliation_strings":["Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milano, Italy"],"raw_orcid":"https://orcid.org/0000-0002-4707-8425","affiliations":[{"raw_affiliation_string":"Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milano, Italy","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Bernasconi, Anna","orcid":"https://orcid.org/0000-0001-8016-5750"},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Bernasconi, Anna","raw_affiliation_strings":["Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milano, Italy"],"raw_orcid":"https://orcid.org/0000-0001-8016-5750","affiliations":[{"raw_affiliation_string":"Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milano, Italy","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Chiara, Matteo","orcid":"https://orcid.org/0000-0003-3983-4961"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Chiara, Matteo","raw_affiliation_strings":["Dipartimento di Bioscienze, Universit\u00e0 degli Studi di Milano, Milan, Italy"],"raw_orcid":"https://orcid.org/0000-0003-3983-4961","affiliations":[{"raw_affiliation_string":"Dipartimento di Bioscienze, Universit\u00e0 degli Studi di Milano, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"last","author":{"id":null,"display_name":"Ceri, Stefano","orcid":"https://orcid.org/0000-0003-0671-2415"},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Ceri, Stefano","raw_affiliation_strings":["Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milano, Italy"],"raw_orcid":"https://orcid.org/0000-0003-0671-2415","affiliations":[{"raw_affiliation_string":"Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milano, Italy","institution_ids":["https://openalex.org/I93860229"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I93860229"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.6552000045776367},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5562999844551086},{"id":"https://openalex.org/keywords/preprint","display_name":"Preprint","score":0.5357000231742859},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.4426000118255615},{"id":"https://openalex.org/keywords/recombination","display_name":"Recombination","score":0.3587999939918518},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.3294000029563904}],"concepts":[{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.6552000045776367},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6093999743461609},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5562999844551086},{"id":"https://openalex.org/C43169469","wikidata":"https://www.wikidata.org/wiki/Q580922","display_name":"Preprint","level":2,"score":0.5357000231742859},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.4426000118255615},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3799999952316284},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3783999979496002},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3693999946117401},{"id":"https://openalex.org/C156695909","wikidata":"https://www.wikidata.org/wiki/Q3373825","display_name":"Recombination","level":3,"score":0.3587999939918518},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3416999876499176},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.3294000029563904},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3287999927997589},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3140999972820282},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.30379998683929443},{"id":"https://openalex.org/C125411270","wikidata":"https://www.wikidata.org/wiki/Q18653","display_name":"Encoding (memory)","level":2,"score":0.30059999227523804},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.28949999809265137},{"id":"https://openalex.org/C171730128","wikidata":"https://www.wikidata.org/wiki/Q5227290","display_name":"Data file","level":2,"score":0.2768000066280365},{"id":"https://openalex.org/C75069973","wikidata":"https://www.wikidata.org/wiki/Q913584","display_name":"Genetic genealogy","level":3,"score":0.2635999917984009},{"id":"https://openalex.org/C57273362","wikidata":"https://www.wikidata.org/wiki/Q576722","display_name":"Decoding methods","level":2,"score":0.2612999975681305}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:zenodo.org:8123833","is_oa":true,"landing_page_url":"https://zenodo.org/record/8123833","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},{"id":"doi:10.5281/zenodo.8123833","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.8123833","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:8123833","is_oa":true,"landing_page_url":"https://zenodo.org/record/8123833","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Data":[0],"and":[1,63,80,84],"code":[2,53],"for":[3],"preprint":[4],"paper<br>":[5],"Data-driven":[6],"recombination":[7],"detection":[8],"in":[9],"viral":[10],"genomes.":[11],"Alfonsi":[12],"T.,":[13],"Bernasconi":[14],"A.,":[15],"Chiara":[16],"M.,":[17],"Ceri":[18],"S..":[19],"bioRxiv":[20],"2023.06.05.543733;":[21],"doi:":[22],"https://doi.org/10.1101/2023.06.05.543733.":[23],"The":[24,38],"repository":[25],"contains:":[26],"-":[27,37],"A":[28],"<strong>manuscript_supplementary_material</strong>,":[29],"containing":[30,70],"also":[31],"a":[32,42,55,67,74,85],"guide":[33,49],"to":[34],"the":[35,71],"files":[36],"RecombinHunt":[39],"application,":[40],"with:":[41],"<strong>README</strong>":[43],"file":[44],"including":[45],"system":[46],"requirements,":[47],"installation":[48],"(running":[50],"<strong>recombinhunt-3.3.3-py3-none-any.whl</strong>),":[51],"example":[52,64],"snippets;":[54],"<strong>demo</strong>":[56],"folder":[57,76,87],"with":[58,77,88],"Jupyter":[59],"notebook":[60],"(Python":[61],"code)":[62],"input/output":[65],"datasets;":[66],"<strong>src":[68],"</strong>folder":[69],"source":[72],"code;":[73],"<strong>environments</strong>":[75],"preprocessed":[78],"datasets":[79],"lineage/mutation":[81],"probability":[82],"tables":[83],"<strong>validation_data</strong>":[86],"supporting":[89],"files.":[90]},"counts_by_year":[],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2025-10-10T00:00:00"}
