{"id":"https://openalex.org/W4394030101","doi":"https://doi.org/10.5281/zenodo.8120827","title":"Tailored machine learning models for functional RNA detection in genome-wide screens","display_name":"Tailored machine learning models for functional RNA detection in genome-wide screens","publication_year":2023,"publication_date":"2023-07-06","ids":{"openalex":"https://openalex.org/W4394030101","doi":"https://doi.org/10.5281/zenodo.8120827"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:8120827","is_oa":true,"landing_page_url":"https://zenodo.org/record/8120827","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/8120827","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010918323","display_name":"Christopher Klapproth","orcid":"https://orcid.org/0000-0001-7219-4551"},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Klapproth, Christopher","raw_affiliation_strings":["University Leipzig"],"affiliations":[{"raw_affiliation_string":"University Leipzig","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5094352457","display_name":"Siegfried Z\u00f6ztsche","orcid":null},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Z\u00f6ztsche, Siegfried","raw_affiliation_strings":["University Leipzig"],"affiliations":[{"raw_affiliation_string":"University Leipzig","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075834431","display_name":"Felix K\u00fchnl","orcid":null},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"K\u00fchnl, Felix","raw_affiliation_strings":["University Leipzig"],"affiliations":[{"raw_affiliation_string":"University Leipzig","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088708809","display_name":"J\u00f6rg Fallmann","orcid":"https://orcid.org/0000-0002-4573-9939"},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Fallmann, J\u00f6rg","raw_affiliation_strings":["University Leipzig"],"affiliations":[{"raw_affiliation_string":"University Leipzig","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016104736","display_name":"Peter F. Stadler","orcid":"https://orcid.org/0000-0002-5016-5191"},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stadler, Peter F.","raw_affiliation_strings":["University Leipzig"],"affiliations":[{"raw_affiliation_string":"University Leipzig","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044416621","display_name":"Sven Findei\u00df","orcid":"https://orcid.org/0000-0002-3311-7745"},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Findei\u00df, Sven","raw_affiliation_strings":["University Leipzig"],"affiliations":[{"raw_affiliation_string":"University Leipzig","institution_ids":["https://openalex.org/I926574661"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5010918323"],"corresponding_institution_ids":["https://openalex.org/I926574661"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9021999835968018,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9021999835968018,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5659309029579163},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4794656038284302},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.44703781604766846},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.39036259055137634},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32699888944625854},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26234620809555054},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16352123022079468}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5659309029579163},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4794656038284302},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.44703781604766846},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.39036259055137634},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32699888944625854},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26234620809555054},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16352123022079468}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:zenodo.org:8120827","is_oa":true,"landing_page_url":"https://zenodo.org/record/8120827","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},{"id":"doi:10.5281/zenodo.8120827","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.8120827","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:8120827","is_oa":true,"landing_page_url":"https://zenodo.org/record/8120827","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191"],"abstract_inverted_index":{"The":[0],"prediction":[1],"of":[2,23,25,31,51,59,80,100,108],"noncoding":[3],"RNA":[4],"and":[5,78,86,92,111],"protein":[6],"coding":[7],"genetic":[8],"loci":[9],"has":[10],"received<br>":[11],"considerable":[12],"attention":[13],"in":[14,18,35,104],"comparative":[15],"genomics":[16],"aiming":[17],"particular<br>":[19],"at":[20],"the":[21,36,45,62,98,116],"identification":[22],"properties":[24],"nucleotide":[26],"sequences":[27],"that":[28],"are<br>":[29],"informative":[30],"their":[32],"biological":[33],"role":[34],"cell.":[37],"We":[38],"present":[39],"here":[40],"a<br>":[41,105],"software":[42,102],"framework":[43,73],"for":[44,74],"alignment-based":[46],"training,":[47],"evaluation":[48,79],"and<br>":[49],"application":[50],"machine":[52],"learning":[53],"models":[54,81],"with":[55],"user-defined<br>":[56],"parameters.":[57],"Instead":[58],"focusing":[60,89],"on":[61,83,90],"one-size-fits-all":[63],"approach":[64],"of<br>":[65],"pervasive":[66],"\\is":[67],"annotation":[68],"pipelines,":[69],"we":[70,96],"offer":[71],"a":[72],"the<br>":[75],"structured":[76],"generation":[77],"based":[82],"arbitrary<br>":[84],"features":[85],"input":[87],"data,":[88],"stable":[91],"explainable":[93],"results.<br>":[94],"Furthermore,":[95],"showcase":[97],"usage":[99],"our":[101,113],"package":[103],"full-genome":[106],"screen":[107],"Drosophila":[109],"melanogaster":[110],"evaluate<br>":[112],"results":[114],"against":[115],"well-known":[117],"but":[118],"much":[119],"less":[120],"flexible":[121],"program<br>":[122],"RNAz.":[123]},"counts_by_year":[],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
