{"id":"https://openalex.org/W4393514032","doi":"https://doi.org/10.5281/zenodo.8015721","title":"Spatial Mapping and Host Linking of Mobile Genetic Elements in Complex Microbiomes - Optimization of single molecule MGE FISH","display_name":"Spatial Mapping and Host Linking of Mobile Genetic Elements in Complex Microbiomes - Optimization of single molecule MGE FISH","publication_year":2023,"publication_date":"2023-06-08","ids":{"openalex":"https://openalex.org/W4393514032","doi":"https://doi.org/10.5281/zenodo.8015721"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:8015721","is_oa":true,"landing_page_url":"https://zenodo.org/record/8015721","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/8015721","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024044049","display_name":"Benjamin Grodner","orcid":"https://orcid.org/0000-0001-7679-2129"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Grodner, Benjamin","raw_affiliation_strings":["Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, USA"],"raw_orcid":"https://orcid.org/0000-0001-7679-2129","affiliations":[{"raw_affiliation_string":"Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024676662","display_name":"Hao Shi","orcid":"https://orcid.org/0000-0002-9658-2847"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shi, Hao","raw_affiliation_strings":["Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, USA"],"raw_orcid":"https://orcid.org/0000-0002-9658-2847","affiliations":[{"raw_affiliation_string":"Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092136234","display_name":"Owen Farchione","orcid":null},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Farchione, Owen","raw_affiliation_strings":["Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046275309","display_name":"Albert C. Vill","orcid":"https://orcid.org/0000-0001-5982-0298"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vill, Albert C","raw_affiliation_strings":["Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, USA"],"raw_orcid":"https://orcid.org/0000-0001-5982-0298","affiliations":[{"raw_affiliation_string":"Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092136235","display_name":"Ioannis Ntekas","orcid":"https://orcid.org/0000-0002-4157-1665"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ntekas, Ioannis","raw_affiliation_strings":["Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017165248","display_name":"Peter J Diebold","orcid":"https://orcid.org/0000-0002-9189-9941"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Diebold, Peter J","raw_affiliation_strings":["Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066282020","display_name":"Warren R. Zipfel","orcid":"https://orcid.org/0000-0003-2640-329X"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zipfel, Warren R","raw_affiliation_strings":["Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, USA"],"raw_orcid":"https://orcid.org/0000-0003-2640-329X","affiliations":[{"raw_affiliation_string":"Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003440200","display_name":"Ilana Brito","orcid":"https://orcid.org/0000-0002-2250-3480"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brito, Ilana L","raw_affiliation_strings":["Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, USA"],"raw_orcid":"https://orcid.org/0000-0002-2250-3480","affiliations":[{"raw_affiliation_string":"Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027216516","display_name":"Iwijn De Vlaminck","orcid":"https://orcid.org/0000-0001-6085-7311"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"De Vlaminck, Iwijn","raw_affiliation_strings":["Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, USA"],"raw_orcid":"https://orcid.org/0000-0001-6085-7311","affiliations":[{"raw_affiliation_string":"Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, USA","institution_ids":["https://openalex.org/I205783295"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5024044049"],"corresponding_institution_ids":["https://openalex.org/I205783295"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9038000106811523,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9038000106811523,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.7419875860214233},{"id":"https://openalex.org/keywords/fish-actinopterygii","display_name":"Fish <Actinopterygii>","score":0.729789137840271},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.5522079467773438},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.49049586057662964},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4580814242362976},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.45009690523147583},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.36392873525619507},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24059507250785828},{"id":"https://openalex.org/keywords/fishery","display_name":"Fishery","score":0.19409644603729248}],"concepts":[{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.7419875860214233},{"id":"https://openalex.org/C2909208804","wikidata":"https://www.wikidata.org/wiki/Q127282","display_name":"Fish <Actinopterygii>","level":2,"score":0.729789137840271},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.5522079467773438},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.49049586057662964},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4580814242362976},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.45009690523147583},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.36392873525619507},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24059507250785828},{"id":"https://openalex.org/C505870484","wikidata":"https://www.wikidata.org/wiki/Q180538","display_name":"Fishery","level":1,"score":0.19409644603729248}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:zenodo.org:8015721","is_oa":true,"landing_page_url":"https://zenodo.org/record/8015721","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},{"id":"doi:10.5281/zenodo.8015721","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.8015721","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:8015721","is_oa":true,"landing_page_url":"https://zenodo.org/record/8015721","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2604155846","https://openalex.org/W4390658901","https://openalex.org/W3121185202","https://openalex.org/W4206185765","https://openalex.org/W2900546243","https://openalex.org/W3035180550","https://openalex.org/W4388834263","https://openalex.org/W1983943311","https://openalex.org/W3088497233","https://openalex.org/W3195423407"],"abstract_inverted_index":{"We":[0,26],"used":[1,38],"<em>Escherichia":[2],"coli":[3,41],"</em>transformed":[4],"with":[5],"pJKR-H-tetR":[6],"plasmids":[7],"encoding":[8],"an":[9],"inducible":[10],"<em>GFP</em>":[11,36],"gene":[12],"as":[13],"a":[14,23,43],"model":[15],"system":[16],"to":[17],"assess":[18],"and":[19,46],"optimize":[20],"MGE-FISH":[21],"on":[22],"confocal":[24],"microscope.":[25],"designed":[27],"FISH":[28,50],"probes":[29],"for":[30],"the":[31,35],"non-coding":[32],"strand":[33],"of":[34],"gene,":[37],"non-transformed":[39],"<em>E.":[40],"</em>as":[42],"negative":[44],"control,":[45],"tested":[47],"six":[48],"different":[49],"protocols.<strong>":[51],"</strong>":[52]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}