{"id":"https://openalex.org/W4393472755","doi":"https://doi.org/10.5281/zenodo.7817520","title":"Supporting data for \"CoVEffect: Interactive System for Mining the Effects of SARS-CoV-2 Mutations and Variants Based on Deep Learning\"","display_name":"Supporting data for \"CoVEffect: Interactive System for Mining the Effects of SARS-CoV-2 Mutations and Variants Based on Deep Learning\"","publication_year":2023,"publication_date":"2023-04-11","ids":{"openalex":"https://openalex.org/W4393472755","doi":"https://doi.org/10.5281/zenodo.7817520"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:7817520","is_oa":true,"landing_page_url":"https://zenodo.org/record/7817520","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/7817520","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021907037","display_name":"Giuseppe Serna Garc\u00eda","orcid":"https://orcid.org/0000-0002-5465-6182"},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Garcia, Giuseppe Serna","raw_affiliation_strings":["Politecnico di Milano"],"raw_orcid":"https://orcid.org/0000-0002-5465-6182","affiliations":[{"raw_affiliation_string":"Politecnico di Milano","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001998343","display_name":"Ruba Al Khalaf","orcid":"https://orcid.org/0000-0002-5645-5886"},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Khalaf, Ruba Al","raw_affiliation_strings":["Politecnico di Milano"],"raw_orcid":"https://orcid.org/0000-0002-5645-5886","affiliations":[{"raw_affiliation_string":"Politecnico di Milano","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092006341","display_name":"Francesco Invernici","orcid":"https://orcid.org/0009-0002-5423-6978"},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Invernici, Francesco","raw_affiliation_strings":["Politecnico di Milano"],"raw_orcid":"https://orcid.org/0009-0002-5423-6978","affiliations":[{"raw_affiliation_string":"Politecnico di Milano","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078800193","display_name":"Anna Bernasconi","orcid":"https://orcid.org/0000-0001-8016-5750"},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Bernasconi, Anna","raw_affiliation_strings":["Politecnico di Milano"],"raw_orcid":"https://orcid.org/0000-0001-8016-5750","affiliations":[{"raw_affiliation_string":"Politecnico di Milano","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048332811","display_name":"Stefano Ceri","orcid":"https://orcid.org/0000-0003-0671-2415"},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Ceri, Stefano","raw_affiliation_strings":["Politecnico di Milano"],"raw_orcid":"https://orcid.org/0000-0003-0671-2415","affiliations":[{"raw_affiliation_string":"Politecnico di Milano","institution_ids":["https://openalex.org/I93860229"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5021907037"],"corresponding_institution_ids":["https://openalex.org/I93860229"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11775","display_name":"COVID-19 diagnosis using AI","score":0.9714000225067139,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11775","display_name":"COVID-19 diagnosis using AI","score":0.9714000225067139,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.5530604720115662},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.5513116121292114},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.41757553815841675},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.40518853068351746},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3912642002105713},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.37246599793434143},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24938350915908813},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.19786110520362854},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.07757017016410828}],"concepts":[{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.5530604720115662},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.5513116121292114},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.41757553815841675},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.40518853068351746},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3912642002105713},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.37246599793434143},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24938350915908813},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.19786110520362854},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.07757017016410828},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:zenodo.org:7817520","is_oa":true,"landing_page_url":"https://zenodo.org/record/7817520","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},{"id":"doi:10.5281/zenodo.7817520","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.7817520","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:7817520","is_oa":true,"landing_page_url":"https://zenodo.org/record/7817520","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4206669628","https://openalex.org/W4224279380","https://openalex.org/W4205317059","https://openalex.org/W3176864053","https://openalex.org/W3198183218","https://openalex.org/W4206651655","https://openalex.org/W4206548596","https://openalex.org/W4292098121","https://openalex.org/W4210433452","https://openalex.org/W3036314732"],"abstract_inverted_index":{"This":[0],"repository":[1],"contains":[2],"the":[3,9,30,58,72,88,96,120,125,140,150,159,165,170,190,219,230,246,250,257,262,273,286,304,316,332,339],"datasets":[4],"created":[5],"and":[6,21,35,209,359],"extracted":[7,260,284,306],"for":[8,28,57,71,86,138,153,163,188,202,319,330,352],"paper:":[10],"Giuseppe":[11],"Serna":[12],"Garc\u00eda,":[13],"Ruba":[14],"Al":[15],"Khalaf,":[16],"Francesco":[17],"Invernici,":[18],"Stefano":[19],"Ceri,":[20],"Anna":[22],"Bernasconi.":[23],"2022.<br>":[24],"\"<strong>CoVEffect</strong>:":[25],"Interactive":[26],"System":[27],"Mining":[29],"<strong>Effects":[31],"of":[32,54,68,77,82,129,134,158,181,184,227,232,234,249,256,278,281,289,293,298,323,326,338],"SARS-CoV-2":[33],"Mutations":[34],"Variants</strong>":[36],"Based":[37],"on":[38,62,218,335],"Deep":[39],"Learning\".":[40],"(Available":[41],"online":[42],"at":[43],"http://gmql.eu/coveffect)":[44],"--------------------------------------------------------------------------------<br>":[45],"LIST":[46],"OF":[47],"FILES":[48],"WITH":[49],"DESCRIPTION:<br>":[50],"--------------------------------------------------------------------------------":[51],"AdditionalFile1-effects-taxonomy:<br>":[52],"Descriptions":[53,67],"legal":[55,69],"values":[56,70],"'Effect'":[59],"field,":[60],"based":[61],"a":[63,224,336],"categorized":[64],"taxonomy.":[65],"AdditionalFile2-levels-taxonomy:<br>":[66],"'Level'":[73],"field.":[74],"AdditionalFile3-training_dataset_target:<br>":[75],"List":[76,128,180,277,292,322],"target":[78,93,130,147,172,294,313],"tuples":[79,94,131,148,295,314],"(manually":[80,132,296],"annotated)":[81,133,297],"221":[83],"abstracts":[84,136,157,186,228,268,283,300,328],"considered":[85,137,162,187,329],"training":[87],"model.":[89,193],"For":[90,144,310],"each":[91,145,311],"abstract,":[92,146,312],"follow":[95,149,315],"schema":[97,151,317],"ID,":[98],"DOI,":[99],"title,":[100],"entity,":[101],"effect,":[102],"level,":[103],"type":[104],"(mutation":[105],"or":[106],"variant),":[107],"tuples_count":[108],"(&gt;1":[109],"when":[110],"an":[111],"effect/level":[112],"is":[113,196,243,346],"shared":[114],"by":[115,261,272],"multiple":[116],"entities,":[117],"#abstracts":[118],"containing":[119],"same":[121],"effect":[122,205,355],"described":[123],"in":[124,177,198,245,265,308,348],"tuple).":[126],"AdditionalFile4-validation_dataset_target:<br>":[127],"50":[135,160,185],"validating":[139,189],"prepared":[141,191],"prediction":[142,192,274,333],"model.<br>":[143],"defined":[152,318],"AdditionalFile3.":[154,320],"AdditionalFile5-validation_dataset_highlighted:<br>":[155],"Textual":[156],"manuscripts":[161],"validation;":[164],"text":[166],"used":[167,239],"to":[168,222,240],"support":[169],"manual":[171],"annotations":[173,183,280,325],"has":[174],"been":[175,270],"highlighted":[176],"yellow.":[178],"AdditionalFile6-validation_dataset_prediction:<br>":[179],"predicted":[182,279,324],"The":[194,236],"file":[195],"split":[197,347],"4":[199,349],"TSV,":[200,350],"respectively":[201,351],"entity":[203,353],"(a),":[204,354],"(b),":[206,356],"level":[207,357],"(c),":[208,358],"whole":[210,360],"tuple":[211,361],"predictions":[212,362],"(d).":[213,363],"AdditionalFile7-keywords_query_list:<br>":[214],"Keyword-based":[215],"search":[216],"run":[217],"CORD-19":[220,252,340],"dataset":[221],"extract":[223],"relevant":[225],"subset":[226,337],"regarding":[229],"scope":[231],"interest":[233],"CoVEffect.":[235],"Boolean":[237],"logic":[238],"combine":[241],"keywords":[242],"explained":[244],"section":[247],"'Annotations":[248],"biology-related":[251,287,341],"cluster'.":[253],"AdditionalFile8-CORD-19_batch_dataset_metadata:<br>":[254],"Metadata":[255],"7,230":[258,282,305],"papers":[259],"keyword-based":[263],"query":[264],"AdditionalFile7.<br>":[266],"These":[267],"have":[269],"annotated":[271],"framework.":[275],"AdditionalFile9-CORD-19_batch_dataset_prediction:<br>":[276],"from":[285,303],"cluster":[288],"CORD-19.":[290],"AdditionalFile10-test_dataset_target:<br>":[291],"100":[299,327],"randomly":[301],"selected":[302],"as":[307],"AdditionalFile8.<br>":[309],"AdditionalFile11-test_dataset_prediction:<br>":[321],"testing":[331],"model":[334],"cluster.":[342],"As":[343],"AdditionalFile6,":[344],"it":[345]},"counts_by_year":[],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2025-10-10T00:00:00"}
