{"id":"https://openalex.org/W4394059600","doi":"https://doi.org/10.5281/zenodo.7500843","title":"Pan-Tumor T-Lymphocyte Detection Dataset","display_name":"Pan-Tumor T-Lymphocyte Detection Dataset","publication_year":2023,"publication_date":"2023-02-15","ids":{"openalex":"https://openalex.org/W4394059600","doi":"https://doi.org/10.5281/zenodo.7500843"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.7500843","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.7500843","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.7500843","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057284684","display_name":"Frauke Wilm","orcid":"https://orcid.org/0000-0002-9065-0554"},"institutions":[{"id":"https://openalex.org/I181369854","display_name":"Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg","ror":"https://ror.org/00f7hpc57","country_code":"DE","type":"education","lineage":["https://openalex.org/I181369854"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Wilm, Frauke","raw_affiliation_strings":["Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg, , Erlangen, Germany"],"raw_orcid":"https://orcid.org/0000-0002-9065-0554","affiliations":[{"raw_affiliation_string":"Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg, , Erlangen, Germany","institution_ids":["https://openalex.org/I181369854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076952708","display_name":"Christian Ihling","orcid":"https://orcid.org/0000-0003-2419-4391"},"institutions":[{"id":"https://openalex.org/I164928964","display_name":"Merck KGaA, Darmstadt (Germany)","ror":"https://ror.org/04b2dty93","country_code":"DE","type":"company","lineage":["https://openalex.org/I164928964"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ihling, Christian","raw_affiliation_strings":["Merck Healthcare KGaA, Darmstadt, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Merck Healthcare KGaA, Darmstadt, Germany","institution_ids":["https://openalex.org/I164928964"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103137552","display_name":"G\u00e1bor M\u00e9hes","orcid":"https://orcid.org/0000-0003-2503-7451"},"institutions":[{"id":"https://openalex.org/I132735039","display_name":"University of Debrecen","ror":"https://ror.org/02xf66n48","country_code":"HU","type":"education","lineage":["https://openalex.org/I132735039"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"M\u00e9hes, G\u00e1bor","raw_affiliation_strings":["Department of Pathology, University of Debrecen"],"raw_orcid":"https://orcid.org/0000-0003-2503-7451","affiliations":[{"raw_affiliation_string":"Department of Pathology, University of Debrecen","institution_ids":["https://openalex.org/I132735039"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023044832","display_name":"Luigi Terracciano","orcid":"https://orcid.org/0000-0002-9393-9660"},"institutions":[{"id":"https://openalex.org/I2802542264","display_name":"University Hospital of Basel","ror":"https://ror.org/04k51q396","country_code":"CH","type":"healthcare","lineage":["https://openalex.org/I2802542264"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Terracciano, Luigi","raw_affiliation_strings":["Research Department Pathology, Universit\u00e4tsspital Basel"],"raw_orcid":"https://orcid.org/0000-0002-9393-9660","affiliations":[{"raw_affiliation_string":"Research Department Pathology, Universit\u00e4tsspital Basel","institution_ids":["https://openalex.org/I2802542264"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060003070","display_name":"Chlo\u00e9 Puget","orcid":"https://orcid.org/0000-0001-7629-0356"},"institutions":[{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Puget, Chlo\u00e9","raw_affiliation_strings":["Freie Universit\u00e4t Berlin, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Freie Universit\u00e4t Berlin, Berlin, Germany","institution_ids":["https://openalex.org/I75951250"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011041473","display_name":"Robert Klopfleisch","orcid":"https://orcid.org/0000-0002-6308-0568"},"institutions":[{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Klopfleisch, Robert","raw_affiliation_strings":["Freie Universit\u00e4t Berlin, Berlin, Germany"],"raw_orcid":"https://orcid.org/0000-0002-6308-0568","affiliations":[{"raw_affiliation_string":"Freie Universit\u00e4t Berlin, Berlin, Germany","institution_ids":["https://openalex.org/I75951250"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029617163","display_name":"Peter J. Sch\u00fcffler","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sch\u00fcffler, Peter","raw_affiliation_strings":["Technische Universit\u00e4t M\u00fcnchen"],"raw_orcid":"https://orcid.org/0000-0002-1353-8921","affiliations":[{"raw_affiliation_string":"Technische Universit\u00e4t M\u00fcnchen","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018481044","display_name":"Marc Aubreville","orcid":"https://orcid.org/0000-0002-5294-5247"},"institutions":[{"id":"https://openalex.org/I4210106192","display_name":"Technische Hochschule Ingolstadt","ror":"https://ror.org/02bxzcy64","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210106192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Aubreville, Marc","raw_affiliation_strings":["Technische Hochschule Ingolstadt, Ingostadt, Germany"],"raw_orcid":"https://orcid.org/0000-0002-5294-5247","affiliations":[{"raw_affiliation_string":"Technische Hochschule Ingolstadt, Ingostadt, Germany","institution_ids":["https://openalex.org/I4210106192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101619735","display_name":"Andreas Maier","orcid":"https://orcid.org/0000-0002-9550-5284"},"institutions":[{"id":"https://openalex.org/I181369854","display_name":"Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg","ror":"https://ror.org/00f7hpc57","country_code":"DE","type":"education","lineage":["https://openalex.org/I181369854"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Maier, Andreas","raw_affiliation_strings":["Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg, , Erlangen, Germany"],"raw_orcid":"https://orcid.org/0000-0002-9550-5284","affiliations":[{"raw_affiliation_string":"Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg, , Erlangen, Germany","institution_ids":["https://openalex.org/I181369854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031177782","display_name":"Thomas Mrowiec","orcid":null},"institutions":[{"id":"https://openalex.org/I164928964","display_name":"Merck KGaA, Darmstadt (Germany)","ror":"https://ror.org/04b2dty93","country_code":"DE","type":"company","lineage":["https://openalex.org/I164928964"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Mrowiec, Thomas","raw_affiliation_strings":["Merck Healthcare KGaA, Darmstadt, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Merck Healthcare KGaA, Darmstadt, Germany","institution_ids":["https://openalex.org/I164928964"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025681380","display_name":"Katharina Breininger","orcid":"https://orcid.org/0000-0001-7600-5869"},"institutions":[{"id":"https://openalex.org/I181369854","display_name":"Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg","ror":"https://ror.org/00f7hpc57","country_code":"DE","type":"education","lineage":["https://openalex.org/I181369854"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Breininger, Katharina","raw_affiliation_strings":["Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg, , Erlangen, Germany"],"raw_orcid":"https://orcid.org/0000-0001-7600-5869","affiliations":[{"raw_affiliation_string":"Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg, , Erlangen, Germany","institution_ids":["https://openalex.org/I181369854"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9190999865531921,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9190999865531921,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9071999788284302,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lymphocyte","display_name":"Lymphocyte","score":0.4425976872444153},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43012934923171997},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4019899368286133},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3651186227798462},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.3029208779335022}],"concepts":[{"id":"https://openalex.org/C2777761686","wikidata":"https://www.wikidata.org/wiki/Q715347","display_name":"Lymphocyte","level":2,"score":0.4425976872444153},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43012934923171997},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4019899368286133},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3651186227798462},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.3029208779335022}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.7500843","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.7500843","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.7500843","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.7500843","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191"],"abstract_inverted_index":{"This":[0],"is":[1],"a":[2,66],"pan-tumor":[3],"immunohistochemistry":[4],"dataset":[5,29],"containing":[6],"2":[7],"mm<sup>2</sup>-sized":[8],"regions":[9],"of":[10,21,68,132],"interest":[11],"(ROIs)":[12],"from":[13],"92":[14],"whole":[15],"slide":[16],"images":[17],"stained":[18],"for":[19,97],"cluster":[20],"differentiation":[22],"3":[23],"(CD3,":[24],"antibody":[25],"clone":[26],"SP7).":[27],"The":[28,61],"covers":[30],"four":[31],"tumor":[32,104,111],"indications:":[33],"32":[34],"head":[35],"and":[36,86,106,129],"neck":[37],"squamous":[38],"cell":[39,45,99],"carcinoma":[40],"(HNSCC)":[41],"samples":[42,49,55,60,62,83],"20":[43,50,56],"non-small":[44],"lung":[46],"cancer":[47,53,58],"(NSCLC)":[48],"triple-negative":[51],"breast":[52],"(TNBC)":[54],"gastric":[57],"(GC)":[59],"were":[63,84,115],"digitized":[64,87],"at":[65,88],"resolution":[67],"0.23":[69],"\u03bcm/px":[70],"(40\u00d7":[71],"objective":[72],"lens)":[73],"using":[74,142],"the":[75,130],"NanoZoomer":[76],"2.0-HT":[77],"scanning":[78],"system":[79],"(Hamamatsu,":[80],"Japan).":[81],"All":[82,135],"prepared":[85],"Merck":[89],"Healthcare":[90],"KGaA.":[91],"We":[92],"provide":[93,125],"bounding":[94],"box":[95],"annotations":[96,128],"three":[98,119,127],"types:":[100],"CD3+":[101],"immune":[102],"cells,":[103,105],"other":[107,136],"cells.":[108],"For":[109,121],"each":[110],"indication,":[112],"five":[113],"ROIs":[114,137],"manually":[116],"annotated":[117,141],"by":[118],"pathologists.":[120],"these":[122],"ROIs,":[123],"we":[124],"all":[126,133],"consensus":[131],"raters.":[134],"have":[138],"been":[139],"semi-automatically":[140],"commercial":[143],"image":[144],"analysis":[145],"software.":[146]},"counts_by_year":[],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2025-10-10T00:00:00"}
