{"id":"https://openalex.org/W6969429481","doi":"https://doi.org/10.5281/zenodo.7463389","title":"TIAToolbox as an end-to-end library for advanced tissue image analytics","display_name":"TIAToolbox as an end-to-end library for advanced tissue image analytics","publication_year":2022,"publication_date":"2022-10-20","ids":{"openalex":"https://openalex.org/W6969429481","doi":"https://doi.org/10.5281/zenodo.7463389"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:7463389","is_oa":true,"landing_page_url":"https://zenodo.org/record/7463389","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"type":"other","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/7463389","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Pocock, Johnathan","orcid":"https://orcid.org/0000-0002-2866-981X"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Pocock, Johnathan","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Graham, Simon","orcid":"https://orcid.org/0000-0002-2214-8212"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Graham, Simon","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Vu, Quoc Dang","orcid":"https://orcid.org/0000-0003-2075-9201"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vu, Quoc Dang","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Jahanifar, Mostafa","orcid":"https://orcid.org/0000-0001-5842-0460"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jahanifar, Mostafa","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Deshpande, Srijay","orcid":"https://orcid.org/0000-0003-3923-2944"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Deshpande, Srijay","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Hadjigeorghiou, Giorgos","orcid":"https://orcid.org/0000-0003-2734-8915"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hadjigeorghiou, Giorgos","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Shephard, Adam","orcid":"https://orcid.org/0000-0003-0969-2990"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shephard, Adam","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Bashir, Raja Muhammad Saad","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bashir, Raja Muhammad Saad","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Bilal, Mohsin","orcid":"https://orcid.org/0000-0001-8632-2729"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bilal, Mohsin","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Lu, Wenqi","orcid":"https://orcid.org/0000-0002-7838-0918"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lu, Wenqi","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Epstein, David","orcid":"https://orcid.org/0000-0001-8634-7168"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Epstein, David","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Minhas, Fayyaz","orcid":"https://orcid.org/0000-0001-9129-1189"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Minhas, Fayyaz","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Rajpoot, Nasir M.","orcid":"https://orcid.org/0000-0002-4706-1308"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rajpoot, Nasir M.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":null,"display_name":"Raza, Shan E Ahmed","orcid":"https://orcid.org/0000-0002-1097-1738"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Raza, Shan E Ahmed","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":14,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/nucleofection","display_name":"Nucleofection","score":0.4372999966144562},{"id":"https://openalex.org/keywords/gestational-period","display_name":"Gestational period","score":0.34060001373291016},{"id":"https://openalex.org/keywords/hyporeflexia","display_name":"Hyporeflexia","score":0.32519999146461487},{"id":"https://openalex.org/keywords/proteogenomics","display_name":"Proteogenomics","score":0.3215999901294708},{"id":"https://openalex.org/keywords/diafiltration","display_name":"Diafiltration","score":0.3109000027179718},{"id":"https://openalex.org/keywords/tsg101","display_name":"TSG101","score":0.3093999922275543},{"id":"https://openalex.org/keywords/dysgeusia","display_name":"Dysgeusia","score":0.3025999963283539},{"id":"https://openalex.org/keywords/liquation","display_name":"Liquation","score":0.2930000126361847}],"concepts":[{"id":"https://openalex.org/C144251240","wikidata":"https://www.wikidata.org/wiki/Q7068229","display_name":"Nucleofection","level":4,"score":0.4372999966144562},{"id":"https://openalex.org/C2992336715","wikidata":"https://www.wikidata.org/wiki/Q63431143","display_name":"Gestational period","level":4,"score":0.34060001373291016},{"id":"https://openalex.org/C2777158700","wikidata":"https://www.wikidata.org/wiki/Q1419356","display_name":"Hyporeflexia","level":3,"score":0.32519999146461487},{"id":"https://openalex.org/C145741570","wikidata":"https://www.wikidata.org/wiki/Q7251534","display_name":"Proteogenomics","level":5,"score":0.3215999901294708},{"id":"https://openalex.org/C18743360","wikidata":"https://www.wikidata.org/wiki/Q1208096","display_name":"Diafiltration","level":4,"score":0.3109000027179718},{"id":"https://openalex.org/C2778283623","wikidata":"https://www.wikidata.org/wiki/Q18032200","display_name":"TSG101","level":5,"score":0.3093999922275543},{"id":"https://openalex.org/C2777054765","wikidata":"https://www.wikidata.org/wiki/Q6402731","display_name":"Dysgeusia","level":3,"score":0.3025999963283539},{"id":"https://openalex.org/C180938184","wikidata":"https://www.wikidata.org/wiki/Q2142270","display_name":"Liquation","level":3,"score":0.2930000126361847},{"id":"https://openalex.org/C133074676","wikidata":"https://www.wikidata.org/wiki/Q428729","display_name":"Fusible alloy","level":2,"score":0.29249998927116394},{"id":"https://openalex.org/C2777742743","wikidata":"https://www.wikidata.org/wiki/Q19904005","display_name":"Durvalumab","level":5,"score":0.29100000858306885},{"id":"https://openalex.org/C2777968768","wikidata":"https://www.wikidata.org/wiki/Q1280161","display_name":"Emperipolesis","level":4,"score":0.2782000005245209},{"id":"https://openalex.org/C104545631","wikidata":"https://www.wikidata.org/wiki/Q464858","display_name":"Demotion","level":3,"score":0.2754000127315521},{"id":"https://openalex.org/C2781032047","wikidata":"https://www.wikidata.org/wiki/Q938793","display_name":"Articular cartilage damage","level":5,"score":0.26989999413490295},{"id":"https://openalex.org/C135979968","wikidata":"https://www.wikidata.org/wiki/Q609809","display_name":"Protein isoform","level":5,"score":0.26989999413490295},{"id":"https://openalex.org/C2776356786","wikidata":"https://www.wikidata.org/wiki/Q1048573","display_name":"Tubulopathy","level":3,"score":0.26669999957084656},{"id":"https://openalex.org/C2777935831","wikidata":"https://www.wikidata.org/wiki/Q3144949","display_name":"Hemopericardium","level":3,"score":0.2603999972343445},{"id":"https://openalex.org/C2778902089","wikidata":"https://www.wikidata.org/wiki/Q5608642","display_name":"Subpoena","level":2,"score":0.25450000166893005},{"id":"https://openalex.org/C2779627259","wikidata":"https://www.wikidata.org/wiki/Q779763","display_name":"Pretext","level":3,"score":0.2533999979496002}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:zenodo.org:7463389","is_oa":true,"landing_page_url":"https://zenodo.org/record/7463389","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},{"id":"doi:10.5281/zenodo.7463389","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.7463389","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:7463389","is_oa":true,"landing_page_url":"https://zenodo.org/record/7463389","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"sustainable_development_goals":[{"score":0.7269629836082458,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Major":[0],"Updates":[1,71,73],"and":[2,40],"Feature":[3],"Improvements":[4],"Adds":[5,9,14,26,62],"NuClick":[6],"architecture":[7],"#449":[8],"Annotation":[10],"Store":[11],"Reader":[12],"#476":[13],"DFBR":[15],"method":[16],"for":[17,46,49,57,65,80,121],"registering":[18],"pair":[19],"of":[20,68],"images":[21],"#510":[22],"Changes":[23,42],"to":[24,33,55,93,98,118],"API":[25],"a":[27],"sample":[28],"SVS":[29],"loading":[30],"function":[31],"<code>tiatoolbox.data.small_svs()</code>":[32],"the":[34,125],"data":[35],"module":[36],"#517":[37],"Bug":[38],"Fixes":[39,83],"Other":[41],"Simplifies":[43],"example":[44],"notebook":[45],"image":[47,70],"reading":[48],"better":[50],"readability":[51],"Restricts":[52],"Shapely":[53],"version":[54],"\\&lt;2.0.0":[56],"compatibility":[58],"Development":[59],"related":[60],"changes":[61],"GitHub":[63],"workflow":[64],"automatic":[66],"generation":[67],"docker":[69],"dependencies":[72],"bump2version":[74],"config":[75],"Enables":[76],"flake8":[77],"E800":[78],"checks":[79],"commented":[81],"codes.":[82],"several":[84],"errors":[85],"generated":[86],"by":[87],"DeepSource.":[88],"Prevent":[89],"test":[90,101],"dumping":[91],"file":[92],"root":[94],"Removes":[95],"duplicate":[96],"functions":[97],"generate":[99],"parameterized":[100],"scenarios":[102],"<strong>Note:</strong>":[103],"Please":[104],"note":[105],"that":[106],"Python":[107,122],"3.7":[108],"support":[109,120],"will":[110],"be":[111],"removed":[112],"after":[113],"this":[114],"release.":[115,127],"We":[116],"plan":[117],"add":[119],"3.11":[123],"in":[124],"next":[126]},"counts_by_year":[],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
