{"id":"https://openalex.org/W4393880522","doi":"https://doi.org/10.5281/zenodo.7413818","title":"LungVis1.0: Active learning AI-powered 3D imaging ecosystem for spatial profiling of lung geometry and pulmonary nanoparticle delivery","display_name":"LungVis1.0: Active learning AI-powered 3D imaging ecosystem for spatial profiling of lung geometry and pulmonary nanoparticle delivery","publication_year":2023,"publication_date":"2023-05-10","ids":{"openalex":"https://openalex.org/W4393880522","doi":"https://doi.org/10.5281/zenodo.7413818"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.7413818","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.7413818","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.7413818","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080424591","display_name":"Lin Yang","orcid":"https://orcid.org/0000-0003-0469-9288"},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Lin Yang","raw_affiliation_strings":["Institute of Lung Health and Immunity (LHI)/Comprehensive Pneumology Center, Helmholtz Zentrum M\u00fcnchen, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Lung Health and Immunity (LHI)/Comprehensive Pneumology Center, Helmholtz Zentrum M\u00fcnchen, Munich, Germany","institution_ids":["https://openalex.org/I3018134672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066741040","display_name":"Otmar Schmid","orcid":"https://orcid.org/0000-0002-8012-7786"},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Otmar Schmid","raw_affiliation_strings":["Institute of Lung Health and Immunity (LHI)/Comprehensive Pneumology Center, Helmholtz Zentrum M\u00fcnchen, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Lung Health and Immunity (LHI)/Comprehensive Pneumology Center, Helmholtz Zentrum M\u00fcnchen, Munich, Germany","institution_ids":["https://openalex.org/I3018134672"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072647800","display_name":"Fabian Isensee","orcid":"https://orcid.org/0000-0002-3519-5886"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Fabian Isensee","raw_affiliation_strings":["Division of Medical Image Computing,Helmholtz Imaging, German Cancer Research Center (DKFZ)"],"affiliations":[{"raw_affiliation_string":"Division of Medical Image Computing,Helmholtz Imaging, German Cancer Research Center (DKFZ)","institution_ids":["https://openalex.org/I17937529"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5080424591"],"corresponding_institution_ids":["https://openalex.org/I3018134672"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11651","display_name":"Inhalation and Respiratory Drug Delivery","score":0.9843999743461609,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11651","display_name":"Inhalation and Respiratory Drug Delivery","score":0.9843999743461609,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fluorescence-microscope","display_name":"Fluorescence microscope","score":0.6251657009124756},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.6247591376304626},{"id":"https://openalex.org/keywords/fluorescence","display_name":"Fluorescence","score":0.6119698286056519},{"id":"https://openalex.org/keywords/nanoparticle","display_name":"Nanoparticle","score":0.5761566162109375},{"id":"https://openalex.org/keywords/light-sheet-fluorescence-microscopy","display_name":"Light sheet fluorescence microscopy","score":0.48559826612472534},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.47092026472091675},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.4680328667163849},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.3634893298149109},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.3034207224845886},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.19977059960365295},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1850854456424713}],"concepts":[{"id":"https://openalex.org/C169274487","wikidata":"https://www.wikidata.org/wiki/Q840211","display_name":"Fluorescence microscope","level":3,"score":0.6251657009124756},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.6247591376304626},{"id":"https://openalex.org/C91881484","wikidata":"https://www.wikidata.org/wiki/Q191807","display_name":"Fluorescence","level":2,"score":0.6119698286056519},{"id":"https://openalex.org/C155672457","wikidata":"https://www.wikidata.org/wiki/Q61231","display_name":"Nanoparticle","level":2,"score":0.5761566162109375},{"id":"https://openalex.org/C113976765","wikidata":"https://www.wikidata.org/wiki/Q1823502","display_name":"Light sheet fluorescence microscopy","level":4,"score":0.48559826612472534},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.47092026472091675},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.4680328667163849},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.3634893298149109},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.3034207224845886},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.19977059960365295},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1850854456424713}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.7413818","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.7413818","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.7413818","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.7413818","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"dataset"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2094643072","https://openalex.org/W4206210906","https://openalex.org/W2522173346","https://openalex.org/W4251922430","https://openalex.org/W3179188441","https://openalex.org/W4297897531","https://openalex.org/W29697196","https://openalex.org/W2612885984","https://openalex.org/W3134327749","https://openalex.org/W2006721351"],"abstract_inverted_index":{"The":[0,32],"imaging":[1,90,142],"dataset":[2,33],"was":[3,93],"obtained":[4],"by":[5],"light":[6],"sheet":[7],"fluorescence":[8,22],"microscopy":[9],"on":[10,56],"tissue":[11],"cleared":[12],"murine":[13,37],"lungs.":[14],"It":[15],"includes":[16],"whole":[17,110],"lung":[18,29,38,154],"autofluorence":[19],"image,":[20,23],"particle":[21],"and":[24,40,46,53,59,62,66,84,101,150],"artifical":[25],"intelligence":[26],"nnU-Net":[27],"generated":[28,102],"airway":[30,41,103],"segments.":[31],"provides":[34],"78":[35],"healthy":[36],"strucutre":[39],"geometry":[42],"for":[43,70,123],"C57BL/6":[44],"mice":[45],"offers":[47],"comprehensive":[48],"delivery":[49,149],"features":[50],"including":[51],"qualitative":[52],"quantitative":[54],"analysis":[55],"the":[57,98,109],"temporal":[58],"spatial":[60,145],"inter-":[61],"intra-acinar":[63],"deposition":[64],"patterns":[65],"NP":[67],"regional":[68],"dosimetry":[69],"four":[71],"commonly-used":[72],"routes":[73],"of":[74,147,153],"pulmonary":[75],"delivery,namely":[76],"intranasal":[77],"liquid":[78,81],"aspiration,":[79],"intratracheal":[80],"instillation,":[82],"ventilator-assisted":[83],"nose-only":[85],"aerosol":[86],"inhalation.":[87],"Raw":[88],"LSFM":[89],"data":[91],"collection":[92],"carried":[94],"out":[95],"between":[96],"2017-2021,":[97],"AI":[99],"code":[100],"segmention":[104],"were":[105,112],"performed":[106],"in":[107,115],"2021-2022,":[108],"datasets":[111],"then":[113],"compiled":[114],"2023.":[116],"Please":[117],"ensure":[118],"to":[119,168],"cite":[120],"our":[121],"paper":[122],"any":[124,163],"reuse":[125],"or":[126],"reanalysis.":[127],"Yang,":[128],"L.,":[129],"Liu,":[130],"Q.,":[131],"Kumar,":[132],"P.":[133],"et":[134],"al.":[135],"LungVis":[136],"1.0:":[137],"an":[138],"automatic":[139],"AI-powered":[140],"3D":[141],"ecosystem":[143],"unveils":[144],"profiling":[146],"nanoparticle":[148],"acinar":[151],"migration":[152],"macrophages.":[155],"Nat":[156],"Commun":[157],"15,":[158],"10138":[159],"(2024).":[160],"https://doi.org/10.1038/s41467-024-54267-1":[161],"For":[162],"inquiries,":[164],"please":[165],"feel":[166],"free":[167],"contact":[169],"us":[170],"at":[171],"lin.yang@helmholtz-munich.de":[172]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2024-04-04T00:00:00"}
