{"id":"https://openalex.org/W4393485064","doi":"https://doi.org/10.5281/zenodo.7260137","title":"Data for - Tracking one-in-a-million: Large-scale benchmark for microbial single-cell tracking with experiment-aware robustness metrics","display_name":"Data for - Tracking one-in-a-million: Large-scale benchmark for microbial single-cell tracking with experiment-aware robustness metrics","publication_year":2022,"publication_date":"2022-10-28","ids":{"openalex":"https://openalex.org/W4393485064","doi":"https://doi.org/10.5281/zenodo.7260137"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.7260137","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.7260137","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.7260137","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087611073","display_name":"Johannes Seiffarth","orcid":"https://orcid.org/0000-0002-2087-9847"},"institutions":[{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Seiffarth, Johannes","raw_affiliation_strings":["Forschungszentrum J\u00fclich"],"raw_orcid":"https://orcid.org/0000-0002-2087-9847","affiliations":[{"raw_affiliation_string":"Forschungszentrum J\u00fclich","institution_ids":["https://openalex.org/I171892758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055635585","display_name":"Luisa Bl\u00f6baum","orcid":"https://orcid.org/0000-0002-3294-1695"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bl\u00f6baum, Luisa","raw_affiliation_strings":["Bielefeld University, Bielefeld"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bielefeld University, Bielefeld","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031674165","display_name":"Katharina L\u00f6ffler","orcid":"https://orcid.org/0000-0001-9769-3517"},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"L\u00f6ffler, Katharina","raw_affiliation_strings":["Karlsruhe Institute of Technology"],"raw_orcid":"https://orcid.org/0000-0001-9769-3517","affiliations":[{"raw_affiliation_string":"Karlsruhe Institute of Technology","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072439856","display_name":"Tim Scherr","orcid":"https://orcid.org/0000-0001-8755-2825"},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Scherr, Tim","raw_affiliation_strings":["Karlsruhe Institute of Technology"],"raw_orcid":"https://orcid.org/0000-0001-8755-2825","affiliations":[{"raw_affiliation_string":"Karlsruhe Institute of Technology","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075437632","display_name":"Alexander Gr\u00fcnberger","orcid":"https://orcid.org/0000-0002-7564-4957"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Gr\u00fcnberger, Alexander","raw_affiliation_strings":["Bielefeld University, Bielefeld, Germany"],"raw_orcid":"https://orcid.org/0000-0002-7564-4957","affiliations":[{"raw_affiliation_string":"Bielefeld University, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058673315","display_name":"Hanno Scharr","orcid":"https://orcid.org/0000-0002-8555-6416"},"institutions":[{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Scharr, Hanno","raw_affiliation_strings":["Forschungszentrum J\u00fclich"],"raw_orcid":"https://orcid.org/0000-0002-8555-6416","affiliations":[{"raw_affiliation_string":"Forschungszentrum J\u00fclich","institution_ids":["https://openalex.org/I171892758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001459055","display_name":"Ralf Mikut","orcid":"https://orcid.org/0000-0001-9100-5496"},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Mikut, Ralf","raw_affiliation_strings":["Karlsruhe Institute of Technology"],"raw_orcid":"https://orcid.org/0000-0001-9100-5496","affiliations":[{"raw_affiliation_string":"Karlsruhe Institute of Technology","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079251665","display_name":"Katharina N\u00f6h","orcid":"https://orcid.org/0000-0002-5407-2275"},"institutions":[{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"N\u00f6h, Katharina","raw_affiliation_strings":["Forschungszentrum J\u00fclich"],"raw_orcid":"https://orcid.org/0000-0002-5407-2275","affiliations":[{"raw_affiliation_string":"Forschungszentrum J\u00fclich","institution_ids":["https://openalex.org/I171892758"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9434000253677368,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9434000253677368,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12167","display_name":"Bacterial Identification and Susceptibility Testing","score":0.9293000102043152,"subfield":{"id":"https://openalex.org/subfields/1308","display_name":"Clinical Biochemistry"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11819","display_name":"Data-Driven Disease Surveillance","score":0.9271000027656555,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tracking","display_name":"Tracking (education)","score":0.8227593302726746},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.6898472309112549},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.6796776056289673},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5747917294502258},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5542885661125183},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4557154178619385},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4094073474407196},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.1646406352519989},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.15798497200012207},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.04894104599952698}],"concepts":[{"id":"https://openalex.org/C2775936607","wikidata":"https://www.wikidata.org/wiki/Q466845","display_name":"Tracking (education)","level":2,"score":0.8227593302726746},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.6898472309112549},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.6796776056289673},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5747917294502258},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5542885661125183},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4557154178619385},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4094073474407196},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.1646406352519989},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.15798497200012207},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.04894104599952698},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.7260137","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.7260137","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.7260137","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.7260137","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2084086966","https://openalex.org/W2023861399","https://openalex.org/W2027108423","https://openalex.org/W1855666948","https://openalex.org/W2758561209","https://openalex.org/W1548095260","https://openalex.org/W2594414941","https://openalex.org/W2781711915","https://openalex.org/W2112817590","https://openalex.org/W1555291398"],"abstract_inverted_index":{"Large-scale":[0],"Corynebacterium":[1,88],"glutamicum":[2,25,89],"data":[3],"set":[4],"with":[5,15,113,174,205],"Segmentation":[6],"and":[7,19,40,51,76,79,102,119,139,211,222],"Tracking":[8,56],"Annotation":[9],"We":[10,44],"provide":[11,45],"five":[12,190],"time-lapse":[13,185],"sequences":[14],"manually":[16],"corrected":[17],"segmentation":[18],"tracking":[20],"annotations":[21,49],"of":[22,47,117,127,177,189],"growing":[23],"C.":[24],"cultivations.":[26],"The":[27,145,184,227],"dataset":[28,53],"contains":[29],"more":[30],"than":[31],"1.4":[32],"million":[33],"cell":[34,38,42,63,69,77],"observations":[35],"in":[36,54,67,84,94,98],"29k":[37],"tracks":[39],"14k":[41],"divisions.":[43],"videos":[46],"the":[48,52,61,105,110,142,160,165,181],"(videos.zip)":[50],"Cell":[55],"Challenge":[57],"format":[58],"(ctc_format.zip).":[59],"In":[60],"videos,":[62],"contours":[64],"are":[65,73,82],"rendered":[66],"yellow,":[68],"links":[70,81],"between":[71],"frames":[72],"colored":[74,83],"red":[75],"divisions,":[78],"their":[80],"blue.":[85],"Data":[86],"Acquisition":[87],"ATCC":[90],"13032":[91],"was":[92,108,131,168],"cultivated":[93],"BHI-medium":[95],"at":[96,121,216],"30\u00b0C":[97],"this":[99],"study.":[100],"From":[101],"overnight":[103],"preculture,":[104],"main":[106,146],"culture":[107,147],"inoculated":[109],"next":[111],"day":[112],"a":[114,125,175,206,212],"starting":[115],"OD600":[116,126],"0.05":[118],"grown":[120],"120":[122],"rpm":[123],"to":[124,134,141,151],"0.25.":[128],"A":[129],"chip":[130],"fabricated,":[132],"according":[133],"(T\u00e4uber":[135],"et":[136],"al.,":[137],"2020),":[138],"fixed":[140],"microscope\u2019s":[143],"holder.":[144],"cells":[148],"were":[149,194],"transferred":[150],"monolayer":[152,191],"growth":[153,192],"chambers":[154,193],"(height":[155],"=":[156],"720":[157],"nm)":[158],"on":[159,180],"microfluidic":[161,166],"chip.":[162],"Flow":[163],"through":[164],"device":[167],"mediated":[169],"by":[170],"pressure":[171,176],"driven":[172],"pumps":[173],"100":[178,223],"mbar":[179],"medium":[182],"reservoir.":[183],"phase":[186],"contrast":[187],"images":[188],"taken":[195],"every":[196],"minute":[197],"using":[198],"an":[199],"inverted":[200],"microscope":[201],"(Nikon":[202],"Eclipse":[203],"Ti2)":[204],"100x":[207],"oil":[208],"emersion":[209],"objective":[210],"DS-QI2":[213],"camera":[214],"(Nikon)":[215],"15":[217],"%":[218],"relative":[219],"DIA-illumination":[220],"intensity":[221],"ms":[224],"exposure":[225],"time.":[226],"spatial":[228],"image":[229],"resolution":[230],"is":[231],"0.072":[232],"\u03bcm/px.":[233]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2024-04-03T00:00:00"}
