{"id":"https://openalex.org/W4393435609","doi":"https://doi.org/10.5281/zenodo.7185680","title":"BOCK: Biological networks and Oligogenic Combinations as a Knowledge graph","display_name":"BOCK: Biological networks and Oligogenic Combinations as a Knowledge graph","publication_year":2022,"publication_date":"2022-12-14","ids":{"openalex":"https://openalex.org/W4393435609","doi":"https://doi.org/10.5281/zenodo.7185680"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:7185680","is_oa":true,"landing_page_url":"https://zenodo.org/record/7185680","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/7185680","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081793262","display_name":"Alexandre Renaux","orcid":"https://orcid.org/0000-0002-4339-2791"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]},{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Renaux, Alexandre","raw_affiliation_strings":["Universit\u00e9 Libre de Bruxelles, Vrije Universiteit Brussel"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Libre de Bruxelles, Vrije Universiteit Brussel","institution_ids":["https://openalex.org/I132053463","https://openalex.org/I13469542"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064553018","display_name":"Ann Now\u00e9","orcid":"https://orcid.org/0000-0001-6346-4564"},"institutions":[{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Now\u00e9, Ann","raw_affiliation_strings":["Vrije Universiteit Brussel"],"affiliations":[{"raw_affiliation_string":"Vrije Universiteit Brussel","institution_ids":["https://openalex.org/I13469542"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003581663","display_name":"Tom Lenaerts","orcid":"https://orcid.org/0000-0003-3645-1455"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]},{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Lenaerts, Tom","raw_affiliation_strings":["Universit\u00e9 Libre de Bruxelles, Vrije Universiteit Brussel"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Libre de Bruxelles, Vrije Universiteit Brussel","institution_ids":["https://openalex.org/I132053463","https://openalex.org/I13469542"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5081793262"],"corresponding_institution_ids":["https://openalex.org/I132053463","https://openalex.org/I13469542"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8449000120162964,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8449000120162964,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7925999760627747,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.7760000228881836,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5168355107307434},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.43770191073417664},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.37641334533691406}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5168355107307434},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.43770191073417664},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.37641334533691406}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:zenodo.org:7185680","is_oa":true,"landing_page_url":"https://zenodo.org/record/7185680","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},{"id":"doi:10.5281/zenodo.7185680","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.7185680","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:7185680","is_oa":true,"landing_page_url":"https://zenodo.org/record/7185680","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W4391913857","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":{"BOCK":[0,95],"is":[1,120],"a":[2,57,128],"new":[3],"knowledge":[4,31],"graph":[5],"integrating":[6],"oligogenic":[7],"disease":[8],"information":[9],"(originally":[10],"from":[11],"the":[12,40,48,69,113,117,132,136],"Oligogenic":[13],"Disease":[14],"Database":[15],"(Natchtegael":[16],"et":[17],"al.":[18],"2022))":[19],"together":[20],"with":[21],"multiple":[22,139],"biological":[23],"networks":[24,36],"and":[25,51,63,143],"ontologies.":[26],"Compared":[27],"to":[28,38,73,84],"more":[29],"generic":[30],"graphs,":[32],"we":[33],"selected":[34],"specifically":[35],"relevant":[37],"understand":[39],"molecular":[41],"mechanisms":[42],"of":[43,60,135],"epistasis,":[44],"placing":[45],"genes":[46,62],"as":[47],"central":[49],"entities,":[50],"focused":[52],"on":[53],"trusted":[54],"resources":[55],"describing":[56],"large":[58],"set":[59],"human":[61],"their":[64,74],"interactions.":[65],"All":[66],"entities":[67],"in":[68,96,112,122],"KG":[70,118,137],"are":[71,110],"linked":[72,90,106],"source":[75],"database":[76],"entry":[77],"via":[78],"an":[79],"URI":[80],"(Uniform":[81],"Resource":[82],"Identifier)":[83],"facilitate":[85],"integrations":[86],"within":[87],"larger":[88],"bioinformatics":[89],"data":[91,107],"repositories.":[92],"We":[93],"provide":[94],"two":[97],"formats:":[98],"<strong>RDF":[99],"(Resource":[100],"Description":[101],"Framework):":[102],"</strong>W3C":[103],"standard":[104],"for":[105],"exchange.":[108],"Triplets":[109],"encoded":[111],"Turtle":[114],"syntax.":[115],"Additionally,":[116],"model":[119],"provided":[121],"OWL.":[123],"<strong>GraphML":[124],"(Graph":[125],"Markup":[126],"Language)</strong>:":[127],"network":[129],"format":[130],"enabling":[131],"fast":[133],"import":[134],"by":[138],"libraries":[140],"(e.g":[141,145],"networkx)":[142],"tools":[144],"Cytoscape).":[146]},"counts_by_year":[],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
