{"id":"https://openalex.org/W4393756940","doi":"https://doi.org/10.5281/zenodo.6902876","title":"OMOP2OBO Condition Occurrence Mappings","display_name":"OMOP2OBO Condition Occurrence Mappings","publication_year":2020,"publication_date":"2020-10-01","ids":{"openalex":"https://openalex.org/W4393756940","doi":"https://doi.org/10.5281/zenodo.6902876"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:6902876","is_oa":true,"landing_page_url":"https://zenodo.org/record/6902876","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/6902876","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031147343","display_name":"Tiffany J. Callahan","orcid":"https://orcid.org/0000-0002-8169-9049"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Callahan, Tiffany J","raw_affiliation_strings":["Computational Bioscience Program, Department of Pharmacology, University of Colorado Anschutz Medical Campus"],"affiliations":[{"raw_affiliation_string":"Computational Bioscience Program, Department of Pharmacology, University of Colorado Anschutz Medical Campus","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035907836","display_name":"Jordan M Wyrwa","orcid":"https://orcid.org/0000-0002-5455-5859"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wyrwa, Jordan M","raw_affiliation_strings":["Department of Physical Medicine and Rehabilitation, School of Medicine, University of Colorado Anschutz School of Medicine"],"affiliations":[{"raw_affiliation_string":"Department of Physical Medicine and Rehabilitation, School of Medicine, University of Colorado Anschutz School of Medicine","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041814853","display_name":"Nicole Vasilevsky","orcid":"https://orcid.org/0000-0001-5208-3432"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vasilevsky, Nicole A","raw_affiliation_strings":["Translational and Integrative Sciences Lab, University of Colorado Anschutz School of Medicine"],"affiliations":[{"raw_affiliation_string":"Translational and Integrative Sciences Lab, University of Colorado Anschutz School of Medicine","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075439357","display_name":"Tellen D. Bennett","orcid":"https://orcid.org/0000-0003-1483-4236"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bennett, Tellen D","raw_affiliation_strings":["Department of Pediatrics, Section of Pediatric Critical Care, School of Medicine, University of Colorado Anschutz School of Medicine"],"affiliations":[{"raw_affiliation_string":"Department of Pediatrics, Section of Pediatric Critical Care, School of Medicine, University of Colorado Anschutz School of Medicine","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037342300","display_name":"Blake Martin","orcid":"https://orcid.org/0000-0001-5683-8310"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martin, Blake","raw_affiliation_strings":["Department of Pediatrics, Section of Pediatric Critical Care, School of Medicine, University of Colorado Anschutz School of Medicine"],"affiliations":[{"raw_affiliation_string":"Department of Pediatrics, Section of Pediatric Critical Care, School of Medicine, University of Colorado Anschutz School of Medicine","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039864309","display_name":"James A. Feinstein","orcid":"https://orcid.org/0000-0003-3074-8805"},"institutions":[{"id":"https://openalex.org/I163612194","display_name":"Outcomes Research Consortium","ror":"https://ror.org/041w69847","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I163612194"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Feinstein, James A","raw_affiliation_strings":["Adult and Child Consortium for Health Outcomes Research and Delivery Science (ACCORDS), University of Colorado Anschutz School of Medicine"],"affiliations":[{"raw_affiliation_string":"Adult and Child Consortium for Health Outcomes Research and Delivery Science (ACCORDS), University of Colorado Anschutz School of Medicine","institution_ids":["https://openalex.org/I163612194"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030261399","display_name":"William A. Baumgartner","orcid":"https://orcid.org/0000-0001-6717-5313"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Baumgartner, William A","raw_affiliation_strings":["Computational Bioscience Program, University of Colorado Anschutz Medical Campus"],"affiliations":[{"raw_affiliation_string":"Computational Bioscience Program, University of Colorado Anschutz Medical Campus","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041860080","display_name":"Lawrence Hunter","orcid":"https://orcid.org/0000-0003-1455-3370"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hunter, Lawrence D","raw_affiliation_strings":["Computational Bioscience Program, Department of Pharmacology, University of Colorado Anschutz Medical Campus"],"affiliations":[{"raw_affiliation_string":"Computational Bioscience Program, Department of Pharmacology, University of Colorado Anschutz Medical Campus","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060507817","display_name":"Michael G. Kahn","orcid":"https://orcid.org/0000-0003-4786-6875"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kahn, Michael G","raw_affiliation_strings":["Department of Pediatrics, Section of Pediatric Critical Care, School of Medicine, University of Colorado Anschutz School of Medicine"],"affiliations":[{"raw_affiliation_string":"Department of Pediatrics, Section of Pediatric Critical Care, School of Medicine, University of Colorado Anschutz School of Medicine","institution_ids":["https://openalex.org/I51713134"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5031147343"],"corresponding_institution_ids":["https://openalex.org/I51713134"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12203","display_name":"Mobile Agent-Based Network Management","score":0.8389999866485596,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12203","display_name":"Mobile Agent-Based Network Management","score":0.8389999866485596,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11325","display_name":"Inertial Sensor and Navigation","score":0.771399974822998,"subfield":{"id":"https://openalex.org/subfields/2202","display_name":"Aerospace Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10080","display_name":"Energy Efficient Wireless Sensor Networks","score":0.7462000250816345,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.38343003392219543}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.38343003392219543}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:zenodo.org:6902876","is_oa":true,"landing_page_url":"https://zenodo.org/record/6902876","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},{"id":"doi:10.5281/zenodo.6902876","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.6902876","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:6902876","is_oa":true,"landing_page_url":"https://zenodo.org/record/6902876","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W4391913857","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":{"<strong>OMOP2OBO":[0],"Condition":[1],"Occurrence":[2],"Mappings":[3,197],"V1.0</strong>":[4],"These":[5,49],"mappings":[6,24,50,92,270,390,460,492,503,519],"were":[7,96,187,202,461,494,521],"created":[8,58,97,269,348,358,462,522],"by":[9,406,463,497],"the":[10,19,53,63,108,114,153,160,209,240,245,249,257,389,395,401,470,491,498,508,517,524,535,554],"OMOP2OBO":[11,17,206,464,572,575,580],"mapping":[12,161,288,304,323,341,347,357,368,375,407],"algorithm":[13,246],"(see":[14],"links":[15],"below).":[16],"-":[18,278,294,311,329,417,423,433,439,576],"first":[20,54,129],"health":[21],"system-wide,":[22],"disease-agnostic":[23],"between":[25,98,226],"standardized":[26],"clinical":[27,76],"terminologies":[28,61],"and":[29,47,75,113,147,167,169,183,232,235,255,391,409,455,476,569],"eight":[30],"Open":[31],"Biomedical":[32],"Ontology":[33,111],"(OBO)":[34],"Foundry":[35,478],"ontologies":[36,479],"spanning":[37],"diseases,":[38],"phenotypes,":[39],"anatomical":[40],"entities,":[41],"cell":[42],"types,":[43],"organisms,":[44],"chemicals,":[45],"vaccines,":[46],"proteins.":[48],"are":[51,128,271,392,516],"also":[52,272],"to":[55,107,131,158,165,171,189,222,531],"be":[56,505],"explicitly":[57],"using":[59,205,216,349,359,469,565],"standard":[60,100],"in":[62,88,93,199,394,543],"Observational":[64],"Medical":[65,122],"Outcomes":[66],"(OMOP)":[67],"common":[68],"data":[69],"model":[70,215],"(CDM),":[71],"ensuring":[72],"both":[73],"semantic":[74],"interoperability":[77],"across":[78],"a":[79,140,212],"space":[80],"of":[81,119,162,175,211,230,242,403,534,561],"N":[82,85],"conditions":[83],"(and":[84],"relationships":[86],"curated":[87],"these":[89,178,515],"ontologies).":[90],"The":[91,116,486,500],"this":[94,200,243,540],"repository":[95],"OMOP":[99,179,231,404,471],"condition":[101],"occurrence":[102],"concepts":[103,135,164,234,405,556],"(i.e.,":[104],"SNOMED":[105],"CT)":[106],"Human":[109],"Phenotype":[110],"(HPO)":[112],"(Mondo).":[115],"National":[117],"Library":[118],"Medicine's":[120],"Unified":[121],"Language":[123],"System":[124],"(UMLS)":[125],"Semantic":[126,154,172],"Types":[127,173],"used":[130,157,188,221,557],"filter":[132],"out":[133],"all":[134,227,262],"that":[136,493,514,520,551],"did":[137],"not":[138,377,528],"have":[139,385,527],"biological":[141],"origin":[142],"(accidents,":[143],"injuries,":[144],"external":[145],"complications,":[146],"findings":[148,166],"without":[149],"clear":[150],"interpretations).":[151],"Then,":[152],"Type":[155],"was":[156],"prioritize":[159],"HPO":[163,413],"symptoms":[168],"Mondo":[170,414],"indicative":[174],"disease.":[176],"For":[177],"domains,":[180],"owl:intersectionOf":[181],"(\u201cand\u201d),":[182],"owl:unionOf":[184],"(\u201cor\u201d)":[185],"constructors":[186],"construct":[190],"semantically":[191],"expressive":[192],"mappings.":[193],"<br>":[194,380,453],"<strong>Mapping":[195],"Details</strong><br>":[196],"included":[198],"set":[201],"generated":[203,495,502],"automatically":[204,496],"or":[207,282,285,298,301,315,320,333,338,376],"through":[208],"use":[210],"Bag-of-words":[213],"embedding":[214],"TF-IDF.":[217],"Cosine":[218],"similarity":[219,224],"is":[220],"compute":[223],"scores":[225,265],"pairwise":[228],"combinations":[229],"OBO":[233,477],"ancestor":[236],"concepts.":[237],"To":[238],"improve":[239],"efficiency":[241],"process,":[244],"searches":[247],"only":[248,489],"top":[250,258],"\ud835\udc5b":[251],"most":[252],"similar":[253],"results":[254],"keeps":[256],"75th":[259],"percentile":[260],"among":[261],"pairs":[263],"with":[264,507],"&gt;=":[266],"0.25.":[267],"Manually":[268],"included.":[273],"<strong><em>Mapping":[274],"Categories</em></strong>":[275],"<strong>Automatic":[276,292,309,327],"Exact":[277,280,293,296,331,416,432],"Concept</strong>:":[279],"label":[281,297,314,332],"synonym,":[283,299,316,334],"dbXRef,":[284,300,317,335],"expert":[286,302,321,339,350,360],"validated":[287,303,322,340],"@":[289,305,324,342],"concept-level;":[290,325,343],"1:1":[291,308,353],"Ancestor:</strong>":[295,330],"concept":[306],"ancestor-level;":[307],"Constructor":[310,328,422,438,447],"Concept:":[312],"</strong>Exact":[313],"cosine":[318,336],"similarity,":[319,337],"1:Many":[326,344,363],"<strong>Manual:":[345],"</strong>Hand":[346],"suggested":[351,361,367],"resources;":[352,362],"<strong>Manual":[354],"Constructor:</strong>":[355],"Hand":[356],"<strong>Concept":[364],"Similarity:</strong>":[365],"score":[366],"--":[369],"manually":[370,501],"verified":[371],"<strong>UnMapped:</strong>":[372],"No":[373],"suitable":[374],"mapped":[378],"type":[379],"<em><strong>Mapping":[381],"Statistics</strong></em><br>":[382],"Additional":[383],"statistics":[384],"been":[386,529],"provided":[387],"for":[388,523],"shown":[393],"table":[396,399],"below.":[397],"This":[398],"presents":[400],"counts":[402],"category":[408],"ontology:":[410],"Mapping":[411],"Category":[412],"Automatic":[415,421,431,437],"Concept":[418,424,427],"4767":[419],"9097":[420],"150":[425],"885":[426],"Similarity":[428],"1374":[429],"667":[430],"Ancestor":[434,440],"13594":[435],"8911":[436],"38085":[441],"40224":[442],"Manual":[443,446],"5119":[444],"755":[445],"10328":[448],"2835":[449],"Unmapped":[450],"36302":[451],"46345":[452],"<strong>Provenance":[454],"Versioning:":[456],"</strong>The":[457],"V1.0":[458],"deposited":[459,487,506],"v1.0.0":[465],"on":[466,481],"October":[467],"2022":[468],"Common":[472],"Data":[473],"Model":[474],"V5.0":[475],"downloaded":[480],"September":[482],"14,":[483],"2020.":[484],"<strong>Caveats:</strong>":[485],"files":[488],"contain":[490],"algorithm.":[499],"will":[504],"official":[509],"preprint":[510],"manuscript.":[511],"Please":[512],"note":[513],"original":[518],"preprint.":[525],"They":[526],"updated":[530],"current":[532,559],"versions":[533,560],"ontologies.":[536],"In":[537],"our":[538],"experience,":[539],"should":[541],"result":[542],"very":[544],"few":[545],"errors,":[546],"but":[547],"we":[548],"do":[549],"suggest":[550],"you":[552],"check":[553],"ontology":[555,563],"against":[558],"each":[562],"before":[564],"them.":[566],"<strong>Important":[567],"Resources":[568],"Documentation</strong>":[570],"GitHub:":[571],"Project":[573],"Wiki:":[574],"wiki":[577],"Zenodo":[578],"Community:":[579],"Preprint":[581],"Manuscript:":[582],"10.5281/zenodo.5716421":[583]},"counts_by_year":[],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}