{"id":"https://openalex.org/W4393471044","doi":"https://doi.org/10.5281/zenodo.6902863","title":"OMOP2OBO Drug Exposure Ingredient Mappings","display_name":"OMOP2OBO Drug Exposure Ingredient Mappings","publication_year":2020,"publication_date":"2020-10-01","ids":{"openalex":"https://openalex.org/W4393471044","doi":"https://doi.org/10.5281/zenodo.6902863"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:6902863","is_oa":true,"landing_page_url":"https://zenodo.org/record/6902863","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/6902863","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031147343","display_name":"Tiffany J. Callahan","orcid":"https://orcid.org/0000-0002-8169-9049"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Callahan, Tiffany J","raw_affiliation_strings":["Computational Bioscience Program, Department of Pharmacology, University of Colorado Anschutz Medical Campus"],"affiliations":[{"raw_affiliation_string":"Computational Bioscience Program, Department of Pharmacology, University of Colorado Anschutz Medical Campus","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030261399","display_name":"William A. Baumgartner","orcid":"https://orcid.org/0000-0001-6717-5313"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Baumgartner, William A","raw_affiliation_strings":["Computational Bioscience Program, Department of Pharmacology, University of Colorado Anschutz Medical Campus"],"affiliations":[{"raw_affiliation_string":"Computational Bioscience Program, Department of Pharmacology, University of Colorado Anschutz Medical Campus","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041860080","display_name":"Lawrence Hunter","orcid":"https://orcid.org/0000-0003-1455-3370"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hunter, Lawrence D","raw_affiliation_strings":["Computational Bioscience Program, Department of Pharmacology, University of Colorado Anschutz Medical Campus"],"affiliations":[{"raw_affiliation_string":"Computational Bioscience Program, Department of Pharmacology, University of Colorado Anschutz Medical Campus","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060507817","display_name":"Michael G. Kahn","orcid":"https://orcid.org/0000-0003-4786-6875"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kahn, Michael G","raw_affiliation_strings":["Department of Pediatrics, Section of Pediatric Critical Care, School of Medicine, University of Colorado Anschutz School of Medicine"],"affiliations":[{"raw_affiliation_string":"Department of Pediatrics, Section of Pediatric Critical Care, School of Medicine, University of Colorado Anschutz School of Medicine","institution_ids":["https://openalex.org/I51713134"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5031147343"],"corresponding_institution_ids":["https://openalex.org/I51713134"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10522","display_name":"Medical Imaging Techniques and Applications","score":0.833899974822998,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10522","display_name":"Medical Imaging Techniques and Applications","score":0.833899974822998,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10816","display_name":"Cerebrovascular and Carotid Artery Diseases","score":0.7878000140190125,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ingredient","display_name":"Ingredient","score":0.8545700311660767},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.5705269575119019},{"id":"https://openalex.org/keywords/active-ingredient","display_name":"Active ingredient","score":0.4352070689201355},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3613150417804718},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.25010401010513306},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.18310439586639404},{"id":"https://openalex.org/keywords/food-science","display_name":"Food science","score":0.17556002736091614},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.14421463012695312}],"concepts":[{"id":"https://openalex.org/C2780589914","wikidata":"https://www.wikidata.org/wiki/Q10675206","display_name":"Ingredient","level":2,"score":0.8545700311660767},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.5705269575119019},{"id":"https://openalex.org/C45904493","wikidata":"https://www.wikidata.org/wiki/Q912807","display_name":"Active ingredient","level":2,"score":0.4352070689201355},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3613150417804718},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.25010401010513306},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.18310439586639404},{"id":"https://openalex.org/C31903555","wikidata":"https://www.wikidata.org/wiki/Q1637030","display_name":"Food science","level":1,"score":0.17556002736091614},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.14421463012695312}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:zenodo.org:6902863","is_oa":true,"landing_page_url":"https://zenodo.org/record/6902863","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},{"id":"doi:10.5281/zenodo.6902863","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.6902863","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:6902863","is_oa":true,"landing_page_url":"https://zenodo.org/record/6902863","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4243609823","https://openalex.org/W4249953473","https://openalex.org/W4231699368","https://openalex.org/W4244777403","https://openalex.org/W2038129006","https://openalex.org/W2162150293","https://openalex.org/W2349942205","https://openalex.org/W2909057104","https://openalex.org/W2378425972","https://openalex.org/W2381544897"],"abstract_inverted_index":{"<strong>OMOP2OBO":[0],"Drug":[1],"Exposure":[2],"Ingredient":[3],"Mappings":[4,186],"V1.0</strong>":[5],"These":[6,50],"mappings":[7,25,51,93,259,378,466,499],"were":[8,97,138,154,176,191,467,501],"created":[9,59,98,258,337,347,468,502],"by":[10,156,394,469],"the":[11,20,54,64,106,111,118,127,132,147,198,229,234,238,246,377,383,389,476,497,504,515,534],"OMOP2OBO":[12,18,195,470,552,555,560],"mapping":[13,277,293,312,330,336,346,357,364,395],"algorithm":[14,235],"(see":[15],"links":[16],"below).":[17],"-":[19,267,283,300,318,407,415,423,431,556],"first":[21,55],"health":[22],"system-wide,":[23],"disease-agnostic":[24],"between":[26,99,215],"standardized":[27],"clinical":[28,77],"terminologies":[29,62],"and":[30,48,76,131,146,152,172,221,224,244,379,397,461,482,549],"eight":[31],"Open":[32],"Biomedical":[33],"Ontology":[34,125,129,134],"(OBO)":[35],"Foundry":[36,484],"ontologies":[37,149,485],"spanning":[38],"diseases,":[39],"phenotypes,":[40],"anatomical":[41],"entities,":[42],"cell":[43],"types,":[44],"organisms,":[45],"chemicals,":[46],"vaccines,":[47],"proteins.":[49],"are":[52,260,380,496],"also":[53,261],"to":[56,110,140,178,211,511],"be":[57],"explicitly":[58],"using":[60,194,205,338,348,475,545],"standard":[61,101],"in":[63,89,94,188,382,523],"Observational":[65],"Medical":[66],"Outcomes":[67],"(OMOP)":[68],"common":[69],"data":[70],"model":[71,204],"(CDM),":[72],"ensuring":[73],"both":[74],"semantic":[75],"interoperability":[78],"across":[79],"a":[80,201],"space":[81],"of":[82,114,200,219,231,391,514,541],"N":[83,86],"conditions":[84],"[and":[85],"relationships":[87],"curated":[88],"these":[90,167,495],"ontologies].":[91],"The":[92],"this":[95,189,232,520],"repository":[96],"OMOP":[100,168,220,392,477],"drug":[102,158],"exposure":[103],"concepts":[104,137,223,393,536],"at":[105,141],"ingredient-level":[107],"(i.e.,":[108],"RxNorm)":[109],"Chemical":[112],"Entities":[113],"Biological":[115],"Interest":[116],"(ChEBI),":[117],"National":[119],"Center":[120],"for":[121,376,503],"Biotechnology":[122],"Information":[123],"Taxon":[124],"(NCBITaxon),":[126],"Protein":[128],"(PRO),":[130],"Vaccine":[133],"(VO).":[135],"All":[136],"aligned":[139],"least":[142],"one":[143],"ChEBI":[144,401],"concept":[145,295],"remaining":[148],"(NCBITaxon,":[150],"PR,":[151],"VO)":[153],"mapped":[155,367],"their":[157],"class":[159],"and/or":[160],"type":[161,368],"(e.g.,":[162],"biologics":[163],"versus":[164],"vaccines).":[165],"For":[166],"domains,":[169],"owl:intersectionOf":[170],"(\u201cand\u201d),":[171],"owl:unionOf":[173],"(\u201cor\u201d)":[174],"constructors":[175],"used":[177,210,537],"construct":[179],"semantically":[180],"expressive":[181],"mappings.":[182],"<br>":[183,459],"<strong>Mapping":[184],"Details</strong><br>":[185],"included":[187],"set":[190],"generated":[192],"automatically":[193],"or":[196,271,274,287,290,304,309,322,327,365],"through":[197],"use":[199],"Bag-of-words":[202],"embedding":[203],"TF-IDF.":[206],"Cosine":[207],"similarity":[208,213],"is":[209],"compute":[212],"scores":[214,254],"all":[216,251],"pairwise":[217],"combinations":[218],"OBO":[222,483],"ancestor":[225],"concepts.":[226],"To":[227],"improve":[228],"efficiency":[230],"process,":[233],"searches":[236],"only":[237],"top":[239,247],"\ud835\udc5b":[240],"most":[241],"similar":[242],"results":[243],"keeps":[245],"75th":[248],"percentile":[249],"among":[250],"pairs":[252],"with":[253],"&gt;=":[255],"0.25.":[256],"Manually":[257],"included.":[262],"<strong><em>Mapping":[263],"Categories</em></strong>":[264],"<strong>Automatic":[265,281,298,316],"Exact":[266,269,282,285,320,406,422],"Concept</strong>:":[268],"label":[270,286,303,321],"synonym,":[272,288,305,323],"dbXRef,":[273,289,306,324],"expert":[275,291,310,328,339,349],"validated":[276,292,311,329],"@":[278,294,313,331],"concept-level;":[279,314,332],"1:1":[280,297,342],"Ancestor:</strong>":[284,319],"ancestor-level;":[296],"Constructor":[299,317,414,416,430,449],"Concept:":[301],"</strong>Exact":[302],"cosine":[307,325],"similarity,":[308,326],"1:Many":[315,333,352],"<strong>Manual:":[334],"</strong>Hand":[335],"suggested":[340,350,356],"resources;":[341,351],"<strong>Manual":[343],"Constructor:</strong>":[344],"Hand":[345],"<strong>Concept":[353],"Similarity:</strong>":[354],"score":[355],"--":[358],"manually":[359],"verified":[360],"<strong>UnMapped:</strong>":[361],"No":[362],"suitable":[363],"not":[366,508],"<em><strong>Mapping":[369],"Statistics</strong></em><br>":[370],"Additional":[371],"statistics":[372],"have":[373,507],"been":[374,509],"provided":[375],"shown":[381],"table":[384,387],"below.":[385],"This":[386],"presents":[388],"counts":[390],"category":[396,400],"ontology:":[398],"Mapping":[399],"NCBITaxon":[402],"PRO":[403],"VO":[404],"Automatic":[405,413,421,429],"Concept":[408,437],"3151":[409],"155":[410],"43":[411],"108":[412],"404":[417],"1":[418,419],"0":[420],"Ancestor":[424,432],"147":[425],"17":[426,442],"20":[427],"4":[428],"210":[433],"3":[434],"2":[435,436,453],"Similarity":[438],"109":[439],"4241":[440],"18":[441],"Manual":[443,448],"322":[444],"230":[445],"157":[446],"21":[447],"72":[450],"14":[451],"8":[452],"UnMapped":[454],"7392":[455],"7146":[456],"11558":[457],"11653":[458],"<strong>Provenance":[460],"Versioning:":[462],"</strong>The":[463],"V1.0":[464],"deposited":[465],"v1.0.0":[471],"on":[472,487],"October":[473],"2022":[474],"Common":[478],"Data":[479],"Model":[480],"V5.0":[481],"downloaded":[486],"September":[488],"14,":[489],"2020.":[490],"<strong>Caveats:</strong>":[491],"Please":[492],"note":[493],"that":[494,500,531],"original":[498],"preprint.":[505],"They":[506],"updated":[510],"current":[512,539],"versions":[513,540],"ontologies.":[516],"In":[517],"our":[518],"experience,":[519],"should":[521],"result":[522],"very":[524],"few":[525],"errors,":[526],"but":[527],"we":[528],"do":[529],"suggest":[530],"you":[532],"check":[533],"ontology":[535,543],"against":[538],"each":[542],"before":[544],"them.":[546],"<strong>Important":[547],"Resources":[548],"Documentation</strong>":[550],"GitHub:":[551],"Project":[553],"Wiki:":[554],"wiki":[557],"Zenodo":[558],"Community:":[559],"Preprint":[561],"Manuscript:":[562],"10.5281/zenodo.5716421":[563]},"counts_by_year":[],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
