{"id":"https://openalex.org/W4393451411","doi":"https://doi.org/10.5281/zenodo.6774364","title":"OMOP2OBO Condition Occurrence Mappings","display_name":"OMOP2OBO Condition Occurrence Mappings","publication_year":2020,"publication_date":"2020-10-01","ids":{"openalex":"https://openalex.org/W4393451411","doi":"https://doi.org/10.5281/zenodo.6774364"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.6774364","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.6774364","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.6774364","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031147343","display_name":"Tiffany J. Callahan","orcid":"https://orcid.org/0000-0002-8169-9049"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Callahan, Tiffany J","raw_affiliation_strings":["Computational Bioscience Program, Department of Pharmacology, University of Colorado Anschutz Medical Campus"],"affiliations":[{"raw_affiliation_string":"Computational Bioscience Program, Department of Pharmacology, University of Colorado Anschutz Medical Campus","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035907836","display_name":"Jordan M Wyrwa","orcid":"https://orcid.org/0000-0002-5455-5859"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wyrwa, Jordan M","raw_affiliation_strings":["Department of Physical Medicine and Rehabilitation, School of Medicine, University of Colorado Anschutz School of Medicine"],"affiliations":[{"raw_affiliation_string":"Department of Physical Medicine and Rehabilitation, School of Medicine, University of Colorado Anschutz School of Medicine","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041814853","display_name":"Nicole Vasilevsky","orcid":"https://orcid.org/0000-0001-5208-3432"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vasilevsky, Nicole A","raw_affiliation_strings":["Translational and Integrative Sciences Lab, University of Colorado Anschutz School of Medicine"],"affiliations":[{"raw_affiliation_string":"Translational and Integrative Sciences Lab, University of Colorado Anschutz School of Medicine","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075439357","display_name":"Tellen D. Bennett","orcid":"https://orcid.org/0000-0003-1483-4236"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bennett, Tellen D","raw_affiliation_strings":["Department of Pediatrics, Section of Pediatric Critical Care, School of Medicine, University of Colorado Anschutz School of Medicine"],"affiliations":[{"raw_affiliation_string":"Department of Pediatrics, Section of Pediatric Critical Care, School of Medicine, University of Colorado Anschutz School of Medicine","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037342300","display_name":"Blake Martin","orcid":"https://orcid.org/0000-0001-5683-8310"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martin, Blake","raw_affiliation_strings":["Department of Pediatrics, Section of Pediatric Critical Care, School of Medicine, University of Colorado Anschutz School of Medicine"],"affiliations":[{"raw_affiliation_string":"Department of Pediatrics, Section of Pediatric Critical Care, School of Medicine, University of Colorado Anschutz School of Medicine","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039864309","display_name":"James A. Feinstein","orcid":"https://orcid.org/0000-0003-3074-8805"},"institutions":[{"id":"https://openalex.org/I163612194","display_name":"Outcomes Research Consortium","ror":"https://ror.org/041w69847","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I163612194"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Feinstein, James A","raw_affiliation_strings":["Adult and Child Consortium for Health Outcomes Research and Delivery Science (ACCORDS), University of Colorado Anschutz School of Medicine"],"affiliations":[{"raw_affiliation_string":"Adult and Child Consortium for Health Outcomes Research and Delivery Science (ACCORDS), University of Colorado Anschutz School of Medicine","institution_ids":["https://openalex.org/I163612194"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030261399","display_name":"William A. Baumgartner","orcid":"https://orcid.org/0000-0001-6717-5313"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Baumgartner, William A","raw_affiliation_strings":["Computational Bioscience Program, University of Colorado Anschutz Medical Campus"],"affiliations":[{"raw_affiliation_string":"Computational Bioscience Program, University of Colorado Anschutz Medical Campus","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041860080","display_name":"Lawrence Hunter","orcid":"https://orcid.org/0000-0003-1455-3370"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hunter, Lawrence D","raw_affiliation_strings":["Computational Bioscience Program, Department of Pharmacology, University of Colorado Anschutz Medical Campus"],"affiliations":[{"raw_affiliation_string":"Computational Bioscience Program, Department of Pharmacology, University of Colorado Anschutz Medical Campus","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060507817","display_name":"Michael G. Kahn","orcid":"https://orcid.org/0000-0003-4786-6875"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kahn, Michael G","raw_affiliation_strings":["Department of Pediatrics, Section of Pediatric Critical Care, School of Medicine, University of Colorado Anschutz School of Medicine"],"affiliations":[{"raw_affiliation_string":"Department of Pediatrics, Section of Pediatric Critical Care, School of Medicine, University of Colorado Anschutz School of Medicine","institution_ids":["https://openalex.org/I51713134"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5031147343"],"corresponding_institution_ids":["https://openalex.org/I51713134"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12203","display_name":"Mobile Agent-Based Network Management","score":0.8389999866485596,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12203","display_name":"Mobile Agent-Based Network Management","score":0.8389999866485596,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11325","display_name":"Inertial Sensor and Navigation","score":0.771399974822998,"subfield":{"id":"https://openalex.org/subfields/2202","display_name":"Aerospace Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10080","display_name":"Energy Efficient Wireless Sensor Networks","score":0.7462000250816345,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.363064706325531},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3201996684074402}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.363064706325531},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3201996684074402}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.6774364","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.6774364","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.6774364","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.6774364","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"dataset"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W1979597421","https://openalex.org/W2007980826","https://openalex.org/W2061531152","https://openalex.org/W3002753104","https://openalex.org/W2077600819","https://openalex.org/W2142036596","https://openalex.org/W2072657027","https://openalex.org/W2600246793","https://openalex.org/W4238204885"],"abstract_inverted_index":{"<strong>OMOP2OBO":[0],"Condition":[1],"Occurrence":[2],"Mappings":[3,197],"V1.0</strong>":[4],"These":[5,49],"mappings":[6,24,50,92,365,428,460,471,487],"were":[7,96,187,202,429,462,489],"created":[8,58,97,430,490],"by":[9,381,431,465],"the":[10,19,53,63,108,114,153,160,209,240,245,249,257,364,370,376,438,459,466,476,485,492,503,522],"OMOP2OBO":[11,17,206,432,540,543,548],"mapping":[12,161,282,298,317,335,343,350,382],"algorithm":[13,246],"(see":[14],"links":[15],"below).":[16],"-":[18,272,288,305,323,392,398,408,414,544],"first":[20,54,129],"health":[21],"system-wide,":[22],"disease-agnostic":[23],"between":[25,98,226],"standardized":[26],"clinical":[27,76],"terminologies":[28,61],"and":[29,47,75,113,147,167,169,183,232,235,255,366,384,423,444,537],"eight":[30],"Open":[31],"Biomedical":[32],"Ontology":[33,111],"(OBO)":[34],"Foundry":[35,446],"ontologies":[36,447],"spanning":[37],"diseases,":[38],"phenotypes,":[39],"anatomical":[40],"entities,":[41],"cell":[42],"types,":[43],"organisms,":[44],"chemicals,":[45],"vaccines,":[46],"proteins.":[48],"are":[51,128,367,484],"also":[52],"to":[55,107,131,158,165,171,189,222,499],"be":[56,473],"explicitly":[57],"using":[59,205,216,437,533],"standard":[60,100],"in":[62,88,93,199,369,511],"Observational":[64],"Medical":[65,122],"Outcomes":[66],"(OMOP)":[67],"common":[68],"data":[69],"model":[70,215],"(CDM),":[71],"ensuring":[72],"both":[73],"semantic":[74],"interoperability":[77],"across":[78],"a":[79,140,212],"space":[80],"of":[81,119,162,175,211,230,242,378,502,529],"N":[82,85],"conditions":[83],"(and":[84],"relationships":[86],"curated":[87],"these":[89,178,483],"ontologies).":[90],"The":[91,116,454,468],"this":[94,200,243,508],"repository":[95],"OMOP":[99,179,231,379,439],"condition":[101],"occurrence":[102],"concepts":[103,135,164,234,380,524],"(i.e.,":[104],"SNOMED":[105],"CT)":[106],"Human":[109],"Phenotype":[110],"(HPO)":[112],"(Mondo).":[115],"National":[117],"Library":[118],"Medicine's":[120],"Unified":[121],"Language":[123],"System":[124],"(UMLS)":[125],"Semantic":[126,154,172],"Types":[127,173],"used":[130,157,188,221,525],"filter":[132],"out":[133],"all":[134,227,262],"that":[136,461,482,488,519],"did":[137],"not":[138,352,496],"have":[139,360,495],"biological":[141],"origin":[142],"(accidents,":[143],"injuries,":[144],"external":[145],"complications,":[146],"findings":[148,166],"without":[149],"clear":[150],"interpretations).":[151],"Then,":[152],"Type":[155],"was":[156],"prioritize":[159],"HPO":[163,388],"symptoms":[168],"Mondo":[170,389],"indicative":[174],"disease.":[176],"For":[177],"domains,":[180],"owl:intersectionOf":[181],"(\u201cand\u201d),":[182],"owl:unionOf":[184],"(\u201cor\u201d)":[185],"constructors":[186],"construct":[190],"semantically":[191],"expressive":[192],"mappings.":[193],"<br>":[194,355,421],"<strong>Mapping":[195],"Details</strong><br>":[196],"included":[198],"set":[201],"generated":[203,463,470],"automatically":[204,464],"or":[207,276,279,292,295,309,314,327,332,351],"through":[208],"use":[210],"Bag-of-words":[213],"embedding":[214],"TF-IDF.":[217],"Cosine":[218],"similarity":[219,224],"is":[220],"compute":[223],"scores":[225,265],"pairwise":[228],"combinations":[229],"OBO":[233,445],"ancestor":[236],"concepts.":[237],"To":[238],"improve":[239],"efficiency":[241],"process,":[244],"searches":[247],"only":[248,457],"top":[250,258],"\ud835\udc5b":[251],"most":[252],"similar":[253],"results":[254],"keeps":[256],"75th":[259],"percentile":[260],"among":[261],"pairs":[263],"with":[264,475],"&gt;=":[266],"0.25.":[267],"<strong><em>Mapping":[268],"Categories</em></strong>":[269],"<strong>Automatic":[270,286,303,321],"Exact":[271,274,287,290,325,391,407],"Concept</strong>:":[273],"label":[275,291,308,326],"synonym,":[277,293,310,328],"dbXRef,":[278,294,311,329],"expert":[280,296,315,333],"validated":[281,297,316,334],"@":[283,299,318,336],"concept-level;":[284,319,337],"1:1":[285,302],"Ancestor:</strong>":[289,324],"concept":[300],"ancestor-level;":[301],"Constructor":[304,322,397,413],"Concept:":[306],"</strong>Exact":[307],"cosine":[312,330],"similarity,":[313,331],"1:Many":[320,338],"<strong>Concept":[339],"Similarity:</strong>":[340],"score":[341],"suggested":[342],"--":[344],"manually":[345,469],"verified":[346],"<strong>UnMapped:</strong>":[347],"No":[348],"suitable":[349],"mapped":[353],"type":[354],"<em><strong>Mapping":[356],"Statistics</strong></em><br>":[357],"Additional":[358],"statistics":[359],"been":[361,497],"provided":[362],"for":[363,491],"shown":[368],"table":[371,374],"below.":[372],"This":[373],"presents":[375],"counts":[377],"category":[383],"ontology:":[385],"Mapping":[386],"Category":[387],"Automatic":[390,396,406,412],"Concept":[393,399,402],"4767":[394],"9097":[395],"150":[400],"885":[401],"Similarity":[403],"1374":[404],"667":[405],"Ancestor":[409,415],"13594":[410],"8911":[411],"38085":[416],"40224":[417],"Unmapped":[418],"36302":[419],"46345":[420],"<strong>Provenance":[422],"Versioning:":[424],"</strong>The":[425],"V1.0":[426],"deposited":[427,455,474],"v1.0.0":[433],"on":[434,449],"October":[435],"2022":[436],"Common":[440],"Data":[441],"Model":[442],"V5.0":[443],"downloaded":[448],"September":[450],"14,":[451],"2020.":[452],"<strong>Caveats:</strong>":[453],"files":[456],"contain":[458],"algorithm.":[467],"will":[472],"official":[477],"preprint":[478],"manuscript.":[479],"Please":[480],"note":[481],"original":[486],"preprint.":[493],"They":[494],"updated":[498],"current":[500,527],"versions":[501,528],"ontologies.":[504],"In":[505],"our":[506],"experience,":[507],"should":[509],"result":[510],"very":[512],"few":[513],"errors,":[514],"but":[515],"we":[516],"do":[517],"suggest":[518],"you":[520],"check":[521],"ontology":[523,531],"against":[526],"each":[530],"before":[532],"them.":[534],"<strong>Important":[535],"Resources":[536],"Documentation</strong>":[538],"GitHub:":[539],"Project":[541],"Wiki:":[542],"wiki":[545],"Zenodo":[546],"Community:":[547],"Preprint":[549],"Manuscript:":[550],"10.5281/zenodo.5716421":[551]},"counts_by_year":[],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2025-10-10T00:00:00"}
