{"id":"https://openalex.org/W4394037754","doi":"https://doi.org/10.5281/zenodo.6575865","title":"BiodivNERE: Gold Standard Corpora for Named Entity Recognition and Relation Extraction in Biodiversity Domain","display_name":"BiodivNERE: Gold Standard Corpora for Named Entity Recognition and Relation Extraction in Biodiversity Domain","publication_year":2022,"publication_date":"2022-04-13","ids":{"openalex":"https://openalex.org/W4394037754","doi":"https://doi.org/10.5281/zenodo.6575865"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:6575865","is_oa":true,"landing_page_url":"https://zenodo.org/record/6575865","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/6575865","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077590238","display_name":"Nora Abdelmageed","orcid":"https://orcid.org/0000-0002-1405-6860"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Abdelmageed, Nora","raw_affiliation_strings":["Heinz Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Heinz Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020627489","display_name":"Felicitas L\u00f6ffler","orcid":"https://orcid.org/0000-0001-6423-7427"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"L\u00f6ffler, Felicitas","raw_affiliation_strings":["Heinz Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Heinz Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086982742","display_name":"Leila Feddoul","orcid":"https://orcid.org/0000-0001-8896-8208"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Feddoul, Leila","raw_affiliation_strings":["Heinz Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Heinz Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046373717","display_name":"Alsayed Algergawy","orcid":"https://orcid.org/0000-0002-8550-4720"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Algergawy, Alsayed","raw_affiliation_strings":["Heinz Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Heinz Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029559772","display_name":"Sheeba Samuel","orcid":"https://orcid.org/0000-0002-7981-8504"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Samuel, Sheeba","raw_affiliation_strings":["Heinz Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Heinz Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011847741","display_name":"Jitendra Gaikwad","orcid":"https://orcid.org/0000-0002-7565-4389"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Gaikwad, Jitendra","raw_affiliation_strings":["Heinz Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Heinz Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069165575","display_name":"Anahita J.N. Kazem","orcid":"https://orcid.org/0000-0003-2475-132X"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kazem, Anahita","raw_affiliation_strings":["Heinz Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Heinz Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024963110","display_name":"Birgitta K\u00f6nig\u2010Ries","orcid":"https://orcid.org/0000-0002-2382-9722"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"K\u00f6nig-Ries, Birgitta","raw_affiliation_strings":["Heinz Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Heinz Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5077590238"],"corresponding_institution_ids":["https://openalex.org/I76198965"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9786999821662903,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.6579832434654236},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.6251301765441895},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6213793754577637},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5869178175926208},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.549710750579834},{"id":"https://openalex.org/keywords/gold-standard","display_name":"Gold standard (test)","score":0.4704034924507141},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.46697092056274414},{"id":"https://openalex.org/keywords/extraction","display_name":"Extraction (chemistry)","score":0.45895394682884216},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4523315727710724},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.37070605158805847},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18918219208717346},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.17832854390144348},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.1300555169582367},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.12266522645950317},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11414748430252075},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.08575952053070068},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.06379750370979309}],"concepts":[{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.6579832434654236},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.6251301765441895},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6213793754577637},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5869178175926208},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.549710750579834},{"id":"https://openalex.org/C40993552","wikidata":"https://www.wikidata.org/wiki/Q514654","display_name":"Gold standard (test)","level":2,"score":0.4704034924507141},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.46697092056274414},{"id":"https://openalex.org/C4725764","wikidata":"https://www.wikidata.org/wiki/Q844704","display_name":"Extraction (chemistry)","level":2,"score":0.45895394682884216},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4523315727710724},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.37070605158805847},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18918219208717346},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.17832854390144348},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.1300555169582367},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.12266522645950317},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11414748430252075},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.08575952053070068},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.06379750370979309},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:zenodo.org:6575865","is_oa":true,"landing_page_url":"https://zenodo.org/record/6575865","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},{"id":"doi:10.5281/zenodo.6575865","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.6575865","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:6575865","is_oa":true,"landing_page_url":"https://zenodo.org/record/6575865","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3199871245","https://openalex.org/W2915436880","https://openalex.org/W3123942215","https://openalex.org/W4285819037","https://openalex.org/W4379379356","https://openalex.org/W3095980030","https://openalex.org/W2983934248","https://openalex.org/W4286980122","https://openalex.org/W3198510869","https://openalex.org/W1605730749"],"abstract_inverted_index":{"BiodivNER+RE":[0],"are":[1,8,34],"two":[2],"gold-standard":[3],"manually":[4],"annotated":[5],"corpora":[6,33],"that":[7],"meant":[9],"to":[10],"be":[11],"for":[12,36,40],"Named":[13],"Entity":[14],"Recognition":[15],"(NER)":[16],"and":[17,25,46],"Relation":[18],"Extraction":[19],"(RE)":[20],"tasks":[21],"based":[22],"on":[23],"abstracts":[24],"metadata":[26],"files":[27],"from":[28],"the":[29],"biodiversity":[30],"domain":[31],"Such":[32],"designed":[35],"machine":[37],"learning":[38],"techniques,":[39],"example,":[41],"NER":[42],"as":[43,48],"TokenClassification":[44],"technique,":[45],"RE":[47],"SequenceClassification":[49],"technique.":[50]},"counts_by_year":[],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
