{"id":"https://openalex.org/W4393881923","doi":"https://doi.org/10.5281/zenodo.6532473","title":"Drugs, Diseases, Genes and Proteins in the CORD-19 Corpus","display_name":"Drugs, Diseases, Genes and Proteins in the CORD-19 Corpus","publication_year":2022,"publication_date":"2022-03-30","ids":{"openalex":"https://openalex.org/W4393881923","doi":"https://doi.org/10.5281/zenodo.6532473"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:6532473","is_oa":true,"landing_page_url":"https://zenodo.org/record/6532473","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/6532473","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016129344","display_name":"Carlos Badenes-Olmedo","orcid":"https://orcid.org/0000-0002-2753-9917"},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Badenes-Olmedo, Carlos","raw_affiliation_strings":["Universidad Polit\u00e9cnica de Madrid"],"raw_orcid":"https://orcid.org/0000-0002-2753-9917","affiliations":[{"raw_affiliation_string":"Universidad Polit\u00e9cnica de Madrid","institution_ids":["https://openalex.org/I88060688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040859728","display_name":"\u00c1lvaro Alonso","orcid":"https://orcid.org/0000-0002-8456-8351"},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alonso, Alvaro","raw_affiliation_strings":["Universidad Polit\u00e9cnica de Madrid"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universidad Polit\u00e9cnica de Madrid","institution_ids":["https://openalex.org/I88060688"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082377531","display_name":"\u00d3scar Corcho","orcid":"https://orcid.org/0000-0002-9260-0753"},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Corcho, Oscar","raw_affiliation_strings":["Universidad Polit\u00e9cnica de Madrid"],"raw_orcid":"https://orcid.org/0000-0002-9260-0753","affiliations":[{"raw_affiliation_string":"Universidad Polit\u00e9cnica de Madrid","institution_ids":["https://openalex.org/I88060688"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5016129344"],"corresponding_institution_ids":["https://openalex.org/I88060688"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.8141000270843506,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.8141000270843506,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10041","display_name":"COVID-19 Clinical Research Studies","score":0.7549999952316284,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.729200005531311,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6482686996459961},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4846130311489105},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4726373553276062},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4480149447917938},{"id":"https://openalex.org/keywords/cord","display_name":"Cord","score":0.43632298707962036},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.29115915298461914},{"id":"https://openalex.org/keywords/surgery","display_name":"Surgery","score":0.0723409354686737}],"concepts":[{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6482686996459961},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4846130311489105},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4726373553276062},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4480149447917938},{"id":"https://openalex.org/C2779632786","wikidata":"https://www.wikidata.org/wiki/Q920297","display_name":"Cord","level":2,"score":0.43632298707962036},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.29115915298461914},{"id":"https://openalex.org/C141071460","wikidata":"https://www.wikidata.org/wiki/Q40821","display_name":"Surgery","level":1,"score":0.0723409354686737}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:zenodo.org:6532473","is_oa":true,"landing_page_url":"https://zenodo.org/record/6532473","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},{"id":"doi:10.5281/zenodo.6532473","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.6532473","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:6532473","is_oa":true,"landing_page_url":"https://zenodo.org/record/6532473","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933","https://openalex.org/W1641042124"],"abstract_inverted_index":{"The":[0,109,140],"BioNER+BioNEN":[1],"system":[2],"described":[3,123],"in":[4,15,37,72,80,124,143],"the":[5,16,30,38,54,66,73,89,102,115,120,148],"paper":[6],"\"<strong><em>An":[7],"Overview":[8],"of":[9,53,60,91,112,119],"Drugs,":[10],"Diseases,":[11],"Genes":[12],"and":[13,28,33,46,79,93],"Proteins":[14],"CORD-19":[17,39],"Corpus</em></strong>\",":[18],"<em>Badenes-Olmedo,":[19],"Carlos":[20],"et.":[21],"al,":[22],"(2022)</em>":[23],"was":[24,48],"used":[25],"to":[26,64],"identify":[27,65],"normalize":[29],"drugs,":[31],"diseases":[32,92],"genetic-related":[34],"terms":[35,68],"mentioned":[36],"corpus":[40],"(January":[41],"2022":[42],"Edition).":[43],"Entity":[44],"recognition":[45],"normalization":[47,103],"done":[49],"for":[50,117],"each":[51,118],"paragraph":[52],"scientific":[55],"article.":[56],"A":[57],"first":[58],"group":[59,111],"labels":[61,113],"is":[62,98,150],"created":[63],"medical":[67],"as":[69],"they":[70],"appear":[71],"text":[74],"(i.e.":[75,84,105,127,154],"<em>diseases_ss</em>,":[76],"<em>chemicals_ss</em>,":[77],"<em>genetics_ss</em>),":[78],"a":[81,95,151],"standardized":[82],"way":[83],"<em>disease_terms_ss</em>,":[85],"<em>chemical_terms_ss</em>,":[86],"<em>genetic_terms_ss</em>).":[87],"In":[88],"case":[90],"genes/proteins,":[94],"predefined":[96],"category":[97],"also":[99],"established":[100],"during":[101],"process":[104],"<em>disease_types_ss</em>,":[106],"<em>genetic_types_ss</em>":[107],").":[108],"following":[110],"contains":[114],"codes":[116],"classification":[121],"systems":[122],"Section":[125],"3":[126],"<em>mesh_codes_ss</em>,":[128],"<em>atc_codes_ss</em>,":[129],"<em>cid_codes_ss</em>,":[130],"<em>doid_codes_ss</em>,":[131],"<em>cui_codes_ss</em>,":[132],"<em>icd10_codes_ss</em>,":[133],"<em>icd9_codes_ss</em>,":[134],"<em>gard_codes_ss</em>,":[135],"<em>snomed_codes_ss</em>,":[136],"<em>nci_codes_ss</em>,":[137],"<em>ncbi_codes_ss</em>,":[138],"<em>uniprot_codes_ss</em>).":[139],"suffix":[141],"<em>_ss</em>":[142],"all":[144],"tags":[145],"indicates":[146],"that":[147],"format":[149],"textual":[152],"list":[153],"string":[155],"sequence).":[156]},"counts_by_year":[],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2025-10-10T00:00:00"}
