{"id":"https://openalex.org/W4393633222","doi":"https://doi.org/10.5281/zenodo.5992215","title":"Pretrained network for segmentation of kidneys and exophytic cysts in subjects with autosomal dominant polycystic kidney disease (ADPKD)","display_name":"Pretrained network for segmentation of kidneys and exophytic cysts in subjects with autosomal dominant polycystic kidney disease (ADPKD)","publication_year":2022,"publication_date":"2022-02-07","ids":{"openalex":"https://openalex.org/W4393633222","doi":"https://doi.org/10.5281/zenodo.5992215"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:5992215","is_oa":true,"landing_page_url":"https://zenodo.org/record/5992215","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/5992215","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100696055","display_name":"Youngwoo Kim","orcid":"https://orcid.org/0000-0002-9961-6205"},"institutions":[{"id":"https://openalex.org/I89004649","display_name":"Korea Institute of Industrial Technology","ror":"https://ror.org/04qfph657","country_code":"KR","type":"other","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I89004649"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Kim, Youngwoo","raw_affiliation_strings":["Korea Institute of Industrial Technology"],"raw_orcid":"https://orcid.org/0000-0002-9961-6205","affiliations":[{"raw_affiliation_string":"Korea Institute of Industrial Technology","institution_ids":["https://openalex.org/I89004649"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017137755","display_name":"Cheng Tao","orcid":"https://orcid.org/0000-0001-9497-9413"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tao, Cheng","raw_affiliation_strings":["University of Pittsburgh"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pittsburgh","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038723454","display_name":"Hyungchan Kim","orcid":null},"institutions":[{"id":"https://openalex.org/I89004649","display_name":"Korea Institute of Industrial Technology","ror":"https://ror.org/04qfph657","country_code":"KR","type":"other","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I89004649"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hyungchan Kim","raw_affiliation_strings":["Korea Institute of Industrial Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Korea Institute of Industrial Technology","institution_ids":["https://openalex.org/I89004649"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023347983","display_name":"Geum-Yoon Oh","orcid":"https://orcid.org/0000-0002-6820-3619"},"institutions":[{"id":"https://openalex.org/I89004649","display_name":"Korea Institute of Industrial Technology","ror":"https://ror.org/04qfph657","country_code":"KR","type":"other","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I89004649"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Geum-Yoon Oh","raw_affiliation_strings":["Korea Institute of Industrial Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Korea Institute of Industrial Technology","institution_ids":["https://openalex.org/I89004649"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114142463","display_name":"Jeong-Beom Ko","orcid":null},"institutions":[{"id":"https://openalex.org/I89004649","display_name":"Korea Institute of Industrial Technology","ror":"https://ror.org/04qfph657","country_code":"KR","type":"other","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I89004649"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jeongbeom Ko","raw_affiliation_strings":["Korea Institute of Industrial Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Korea Institute of Industrial Technology","institution_ids":["https://openalex.org/I89004649"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113161995","display_name":"Kyungtae T Bae","orcid":null},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kyungtae T Bae","raw_affiliation_strings":["University of Pittsburgh"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pittsburgh","institution_ids":["https://openalex.org/I170201317"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11412","display_name":"Genetic and Kidney Cyst Diseases","score":0.9793999791145325,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11412","display_name":"Genetic and Kidney Cyst Diseases","score":0.9793999791145325,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/autosomal-dominant-polycystic-kidney-disease","display_name":"Autosomal dominant polycystic kidney disease","score":0.9312142133712769},{"id":"https://openalex.org/keywords/pkd1","display_name":"PKD1","score":0.5762138962745667},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.5217348337173462},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.4929628372192383},{"id":"https://openalex.org/keywords/polycystic-kidney-disease","display_name":"Polycystic kidney disease","score":0.4819895625114441},{"id":"https://openalex.org/keywords/polycystic-kidney","display_name":"Polycystic kidney","score":0.4690331220626831},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.3770553469657898},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.36767593026161194},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.35097557306289673},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.32590344548225403},{"id":"https://openalex.org/keywords/cyst","display_name":"Cyst","score":0.2581423819065094},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.22312206029891968},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1259867250919342}],"concepts":[{"id":"https://openalex.org/C2776266639","wikidata":"https://www.wikidata.org/wiki/Q2732398","display_name":"Autosomal dominant polycystic kidney disease","level":3,"score":0.9312142133712769},{"id":"https://openalex.org/C100773827","wikidata":"https://www.wikidata.org/wiki/Q82302467","display_name":"PKD1","level":4,"score":0.5762138962745667},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.5217348337173462},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.4929628372192383},{"id":"https://openalex.org/C2780145431","wikidata":"https://www.wikidata.org/wiki/Q15443105","display_name":"Polycystic kidney disease","level":3,"score":0.4819895625114441},{"id":"https://openalex.org/C3018663864","wikidata":"https://www.wikidata.org/wiki/Q15443105","display_name":"Polycystic kidney","level":3,"score":0.4690331220626831},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.3770553469657898},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.36767593026161194},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.35097557306289673},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.32590344548225403},{"id":"https://openalex.org/C2780597408","wikidata":"https://www.wikidata.org/wiki/Q193211","display_name":"Cyst","level":2,"score":0.2581423819065094},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.22312206029891968},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1259867250919342}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:zenodo.org:5992215","is_oa":true,"landing_page_url":"https://zenodo.org/record/5992215","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},{"id":"doi:10.5281/zenodo.5992215","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.5992215","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:5992215","is_oa":true,"landing_page_url":"https://zenodo.org/record/5992215","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2117399753","https://openalex.org/W2970655201","https://openalex.org/W2055891993","https://openalex.org/W1969327256","https://openalex.org/W2038470235","https://openalex.org/W3214259766","https://openalex.org/W3155193374","https://openalex.org/W2110452525","https://openalex.org/W1977202492","https://openalex.org/W4318261816"],"abstract_inverted_index":{"This":[0],"pretrained":[1],"network":[2,26,50],"based":[3],"on":[4],"the":[5,46,49],"3D":[6],"U-Net":[7],"is":[8,57],"for":[9,59],"segmentation":[10],"of":[11,42,48],"kidneys":[12],"and":[13,45],"exophytic":[14,35],"cysts":[15],"in":[16],"subjects":[17,37],"with":[18,29,34,38],"autosomal":[19],"dominant":[20],"polycystic":[21],"kidney":[22],"disease":[23],"(ADPKD).":[24],"The":[25,40],"was":[27],"trained":[28,43],"157":[30],"(including":[31],"53":[32],"cases":[33],"cysts)":[36],"ADPKD.":[39],"details":[41],"dataset":[44],"performance":[47],"will":[51],"be":[52],"updated":[53],"after":[54],"our":[55],"manuscript":[56],"accepted":[58],"publication.":[60]},"counts_by_year":[],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2025-10-10T00:00:00"}
