{"id":"https://openalex.org/W4393841587","doi":"https://doi.org/10.5281/zenodo.5774300","title":"Semi-simulated dataset of indel calling tool evaluation","display_name":"Semi-simulated dataset of indel calling tool evaluation","publication_year":2021,"publication_date":"2021-03-23","ids":{"openalex":"https://openalex.org/W4393841587","doi":"https://doi.org/10.5281/zenodo.5774300"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:5774300","is_oa":true,"landing_page_url":"https://zenodo.org/record/5774300","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/5774300","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100387113","display_name":"Ning Wang","orcid":"https://orcid.org/0000-0002-1275-4710"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Ning, Wang","raw_affiliation_strings":["University of Turku"],"raw_orcid":"https://orcid.org/0000-0002-1275-4710","affiliations":[{"raw_affiliation_string":"University of Turku","institution_ids":["https://openalex.org/I155660961"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5100387113"],"corresponding_institution_ids":["https://openalex.org/I155660961"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10201","display_name":"Speech Recognition and Synthesis","score":0.9061999917030334,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10201","display_name":"Speech Recognition and Synthesis","score":0.9061999917030334,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/indel","display_name":"Indel","score":0.8601803779602051},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4590441584587097},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22654908895492554},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12053236365318298},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.05923625826835632}],"concepts":[{"id":"https://openalex.org/C119054055","wikidata":"https://www.wikidata.org/wiki/Q1576681","display_name":"Indel","level":5,"score":0.8601803779602051},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4590441584587097},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22654908895492554},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12053236365318298},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.05923625826835632},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:zenodo.org:5774300","is_oa":true,"landing_page_url":"https://zenodo.org/record/5774300","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},{"id":"doi:10.5281/zenodo.5774300","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.5774300","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:5774300","is_oa":true,"landing_page_url":"https://zenodo.org/record/5774300","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2033001683","https://openalex.org/W2167094946","https://openalex.org/W2894284492","https://openalex.org/W4387460329","https://openalex.org/W2046457574","https://openalex.org/W1949458596","https://openalex.org/W3144677376","https://openalex.org/W32785519","https://openalex.org/W4382398022"],"abstract_inverted_index":{"The":[0],"semi-simulated":[1,17,30,43,56,65],"datasets":[2],"used":[3,78,112],"in":[4,79,113],"Ning":[5,80,114],"Wang,":[6,81,115],"et":[7,82,116],"al.":[8,83,117],"100bp_5X_500_Venter_read1.fq.gz":[9],"&":[10,23,36,49,62],"100bp_5X_500_Venter_read2.fq.gz:":[11],"5X":[12],"coverage,":[13,26,39,52],"100bp":[14,27,53],"read":[15,28,41,54],"length":[16,29,42,55],"paired-end":[18,31,44,57],"sequencing":[19,32,45,58],"FASTQ":[20,33,46,59],"files.":[21,34,47,60],"100bp_30X_500_Venter_read1.fq.gz":[22],"100bp_30X_500_Venter_read2.fq.gz:":[24],"30X":[25,38],"250bp_30X_500_Venter_read1.fq.gz":[35],"250bp_30X_500_Venter_read2.fq.gz:":[37],"250bp":[40],"100bp_60X_500_Venter_read1.fq.gz":[48],"100bp_60X_500_Venter_read2.fq.gz:":[50],"60X":[51],"Haplotype_1_no_gap.fa":[61],"Haplotype_2_no_gap.fa:":[63],"the":[64,96],"dipoid":[66],"human":[67],"genome":[68,100],"hg19":[69],"chromosome":[70,73],"1":[71],"and":[72,107],"2,":[74],"including":[75],"HuRef":[76,110],"indels":[77,111],"In":[84],"order":[85],"to":[86,91],"use":[87],"ART":[88],"(fastq":[89],"simulator)":[90],"generate":[92],"simulated":[93],"fastq":[94],"fiels,":[95],"gaps":[97],"(Ns)":[98],"of":[99,109],"were":[101],"removed.":[102],"chr1_chr2_variants_truthset.txt:":[103],"types,":[104],"position,":[105],"size":[106],"genotype":[108]},"counts_by_year":[],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2025-10-10T00:00:00"}