{"id":"https://openalex.org/W6950025178","doi":"https://doi.org/10.5281/zenodo.5167938","title":"MitoLink: A Generic Integrated Web-based Workflow System to Evaluate Genotype-Phenotype Correlations in Human Mitochondrial Diseases: Observations from The GenomeAsia Pilot Project","display_name":"MitoLink: A Generic Integrated Web-based Workflow System to Evaluate Genotype-Phenotype Correlations in Human Mitochondrial Diseases: Observations from The GenomeAsia Pilot Project","publication_year":2021,"publication_date":"2021-08-06","ids":{"openalex":"https://openalex.org/W6950025178","doi":"https://doi.org/10.5281/zenodo.5167938"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:5167938","is_oa":true,"landing_page_url":"https://zenodo.org/record/5167938","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"software"},"type":"software","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/5167938","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Kumar, Rakesh","orcid":"https://orcid.org/0000-0003-1645-6451"},"institutions":[{"id":"https://openalex.org/I66760702","display_name":"Council of Scientific and Industrial Research","ror":"https://ror.org/021wm7p51","country_code":"IN","type":"government","lineage":["https://openalex.org/I2799351866","https://openalex.org/I4210134808","https://openalex.org/I66760702"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Kumar, Rakesh","raw_affiliation_strings":["CSIR-IMTECH"],"raw_orcid":"https://orcid.org/0000-0003-1645-6451","affiliations":[{"raw_affiliation_string":"CSIR-IMTECH","institution_ids":["https://openalex.org/I66760702"]}]},{"author_position":"last","author":{"id":null,"display_name":"Bhardwaj, Anshu","orcid":"https://orcid.org/0000-0001-5830-2616"},"institutions":[{"id":"https://openalex.org/I66760702","display_name":"Council of Scientific and Industrial Research","ror":"https://ror.org/021wm7p51","country_code":"IN","type":"government","lineage":["https://openalex.org/I2799351866","https://openalex.org/I4210134808","https://openalex.org/I66760702"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Bhardwaj, Anshu","raw_affiliation_strings":["CSIR-IMTECH"],"raw_orcid":"https://orcid.org/0000-0001-5830-2616","affiliations":[{"raw_affiliation_string":"CSIR-IMTECH","institution_ids":["https://openalex.org/I66760702"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I66760702"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":{"id":"https://openalex.org/T11877","display_name":"Iron oxide chemistry and applications","score":0.6877999901771545,"subfield":{"id":"https://openalex.org/subfields/2105","display_name":"Renewable Energy, Sustainability and the Environment"},"field":{"id":"https://openalex.org/fields/21","display_name":"Energy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11877","display_name":"Iron oxide chemistry and applications","score":0.6877999901771545,"subfield":{"id":"https://openalex.org/subfields/2105","display_name":"Renewable Energy, Sustainability and the Environment"},"field":{"id":"https://openalex.org/fields/21","display_name":"Energy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10716","display_name":"Soil and Unsaturated Flow","score":0.11050000041723251,"subfield":{"id":"https://openalex.org/subfields/2205","display_name":"Civil and Structural Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11331","display_name":"Fecal contamination and water quality","score":0.03840000182390213,"subfield":{"id":"https://openalex.org/subfields/2312","display_name":"Water Science and Technology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7799999713897705},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6183000206947327},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.5056999921798706},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.48100000619888306},{"id":"https://openalex.org/keywords/modularity","display_name":"Modularity (biology)","score":0.46860000491142273},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.46650001406669617},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4480000138282776},{"id":"https://openalex.org/keywords/installation","display_name":"Installation","score":0.40230000019073486}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7799999713897705},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6488999724388123},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6183000206947327},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.5056999921798706},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.48100000619888306},{"id":"https://openalex.org/C2779478453","wikidata":"https://www.wikidata.org/wiki/Q6889748","display_name":"Modularity (biology)","level":2,"score":0.46860000491142273},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.46650001406669617},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4480000138282776},{"id":"https://openalex.org/C146778888","wikidata":"https://www.wikidata.org/wiki/Q836862","display_name":"Installation","level":2,"score":0.40230000019073486},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.3747999966144562},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.3443000018596649},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.3391000032424927},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3314000070095062},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.3102000057697296},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.30889999866485596},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.3021000027656555},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.2953000068664551},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.2732999920845032},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.2703999876976013},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.27000001072883606},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.2583000063896179},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.2529999911785126}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:zenodo.org:5167938","is_oa":true,"landing_page_url":"https://zenodo.org/record/5167938","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"software"},{"id":"doi:10.5281/zenodo.5167938","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.5167938","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Software"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:5167938","is_oa":true,"landing_page_url":"https://zenodo.org/record/5167938","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"software"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.5121250152587891,"display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"MitoLink":[0,19,114,148,171,195,218,245,307],"is":[1,59,64,104,115,149,172,266],"a":[2,44,116,150,156],"generic,":[3],"scalable":[4,151],"and":[5,27,39,53,75,77,106,128,145,177,214,290,311,318],"modular":[6],"web-based":[7],"workflow":[8,119],"system":[9,120,152,238],"developed":[10],"to":[11,66,110,133,200,216,232,301],"study":[12],"genotype-phenotype":[13,135,185],"correlations":[14,136,186],"in":[15,70,90,98,255],"human":[16],"mitochondrial":[17,54,57,138],"diseases.":[18,139],"integrates":[20],"applications":[21,160],"for":[22,79,123,137,193,251,315],"assessment":[23],"of":[24,47,86,130,143,159,169,180,261],"genomic":[25,131],"variation":[26,132],"currently":[28],"houses":[29],"genome-wide":[30],"datasets":[31],"from":[32,95,228,297],"Genome":[33,72],"Asia":[34,73],"Pilot":[35],"project,":[36],"gnomAD,":[37],"ClinVar":[38],"DisGenNet.":[40],"In":[41],"this":[42],"study,":[43],"reference":[45],"list":[46],"nearly":[48],"3975":[49],"proteins":[50],"(both":[51],"nuclear":[52],"encoded)":[55],"with":[56,210,272],"function":[58],"reported.":[60],"This":[61],"protein":[62],"set":[63,158],"mapped":[65],"disease":[67,189],"associated":[68],"variants":[69],"the":[71,102,141,167,234],"Project":[74],"DisGenNet":[76],"evaluated":[78],"pathogenicity":[80],"as":[81],"defined":[82],"by":[83],"ClinVar.":[84],"Observations":[85],"shared":[87],"genetic":[88],"components":[89],"potential":[91],"comorbidities":[92],"are":[93,313],"discussed":[94],"gene-disease":[96],"network":[97,285],"Asian":[99],"population,":[100],"however,":[101],"platform":[103],"generic":[105],"can":[107,154,225,294],"be":[108],"applied":[109],"any":[111],"population":[112],"dataset.":[113],"unique":[117],"customized":[118],"that":[121,153],"allows":[122],"systematic":[124],"storage,":[125],"extraction,":[126],"analysis":[127],"visualization":[129],"understand":[134],"Given":[140],"modularity":[142],"tool":[144],"data":[146,164],"integration,":[147],"accommodate":[155],"diverse":[157],"linked":[161],"via":[162],"standard":[163],"structure":[165],"within":[166],"framework":[168],"Galaxy.":[170],"built":[173],"on":[174,236,268],"FAIR":[175],"principles":[176],"supports":[178],"creation":[179],"reproducible":[181],"workflows":[182],"towards":[183],"understanding":[184],"across":[187],"several":[188],"phenotypes":[190],"globally.":[191],"Steps":[192],"installing":[194],"VM":[196,235,247,253,265,305,308],":-":[197],"User":[198,224,242,293],"need":[199],"install":[201,233],"VirtualBox":[202],"(Version":[203],"6.1.26":[204],"r145957":[205],"(Qt5.6.2))":[206],"(download":[207],"link":[208],"https://www.virtualbox.org/wiki/Downloads)":[209],"its":[211],"extension":[212],"packs":[213],"proceed":[215],"import":[217,252,302],"Galaxy":[219,246,320],"Virtual":[220],"Machine":[221],"(VM)":[222],"\"mitolink_vm\".<br>":[223],"take":[226,295],"help":[227,296],"https://www.virtualbox.org/manual/ch01.html#intro-installing":[229],"or":[230,299],"https://www.virtualbox.org/manual/ch02.html":[231],"their":[237],"(Windows,":[239],"MacOS,":[240],"Linux).":[241],"should":[243],"download":[244],"file":[248,250,259],"\"mitolink_vm.ova\"":[249],"appliance":[254],"VirtualBox.":[256],"It":[257],"has":[258],"size":[260],"~15.8":[262],"GB.<br>":[263],"The":[264],"based":[267],"Ubuntu":[269],"20.04":[270],"x64":[271],"configuration":[273],"1":[274],"processor,":[275],"2":[276],"GB":[277,280],"RAM,":[278],"60":[279],"HDD":[281],"disk":[282],"space,":[283],"two":[284],"(Bridge,NAT),":[286],"128MB":[287],"Video":[288],"memory":[289],"3D":[291],"acceleration.<br>":[292],"https://www.virtualbox.org/manual/ch01.html#ovf-import-appliance":[298],"https://www.virtualbox.org/manual/ch08.html#vboxmanage-import":[300],"OVA":[303],"formatted":[304],"appliance.":[306],"admin":[309],"username":[310],"password":[312],"'mitolink'":[314],"login,":[316],"MySql":[317],"Mitolink":[319],"web":[321],"GUI.<br>":[322]},"counts_by_year":[],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2025-10-10T00:00:00"}
