{"id":"https://openalex.org/W3194222750","doi":"https://doi.org/10.5281/zenodo.4923277","title":"LiberTEM/LiberTEM: 0.7.0","display_name":"LiberTEM/LiberTEM: 0.7.0","publication_year":2021,"publication_date":"2021-06-10","ids":{"openalex":"https://openalex.org/W3194222750","doi":"https://doi.org/10.5281/zenodo.4923277","mag":"3194222750"},"language":"et","primary_location":{"id":"pmh:oai:zenodo.org:4923277","is_oa":true,"landing_page_url":"https://zenodo.org/record/4923277","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"type":"article","indexed_in":[],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/4923277","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020873519","display_name":"Alexander Clausen","orcid":"https://orcid.org/0000-0002-9555-7455"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Alexander Clausen","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-9555-7455","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054730005","display_name":"Abijith Bahuleyan","orcid":"https://orcid.org/0000-0001-5045-5650"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Abijith Bahuleyan","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-5045-5650","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036777080","display_name":"Dieter Weber","orcid":"https://orcid.org/0000-0001-6635-9567"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dieter Weber","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-6635-9567","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067238555","display_name":"Shankhadeep Dey","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shankhadeep Dey","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006948939","display_name":"Colin Ophus","orcid":"https://orcid.org/0000-0003-2348-8558"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Colin Ophus","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-2348-8558","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017534649","display_name":"Simon Peter","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Simon Peter","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062266117","display_name":"Barnaby D.A. Levin","orcid":"https://orcid.org/0000-0003-1010-0366"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Barnaby D.A. Levin","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-1010-0366","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011576529","display_name":"Daniel S. Katz","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Daniel S. Katz","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069220548","display_name":"Jaeweon Shin","orcid":"https://orcid.org/0000-0002-5578-1014"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jaeweon Shin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040792430","display_name":"Rahul Chandra","orcid":"https://orcid.org/0000-0003-2079-5368"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rahul Chandra","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-2079-5368","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052497610","display_name":"Anand Baburajan","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Anand Baburajan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077999397","display_name":"Rafal E. Dunin\u2010Borkowski","orcid":"https://orcid.org/0000-0001-8082-0647"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rafal E. Dunin\u2010Borkowski","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-8082-0647","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089860581","display_name":"Sai Sunku","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sai Sunku","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049082461","display_name":"Magnus Nord","orcid":"https://orcid.org/0000-0001-7981-5293"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Magnus Nord","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-7981-5293","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089042842","display_name":"Schyndel vanJay","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Schyndel vanJay","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073432215","display_name":"M\u00fcller-CasparyKnut","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M\u00fcller-CasparyKnut","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067736150","display_name":"Jan Caron","orcid":"https://orcid.org/0000-0002-0873-889X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jan Caron","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087433531","display_name":"Sayandip Halder","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sayandip Halder","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-0224-3746","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073379218","display_name":"Vadim Migunov","orcid":"https://orcid.org/0000-0002-6296-4492"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vadim Migunov","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-6296-4492","affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5078653027","display_name":"Karina Ruzaeva","orcid":"https://orcid.org/0000-0003-3610-0989"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Karina Ruzaeva","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-3610-0989","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":20,"corresponding_author_ids":["https://openalex.org/A5020873519"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1831,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.7497076,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.8651999831199646,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.8651999831199646,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.011800000444054604,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12039","display_name":"Electron and X-Ray Spectroscopy Techniques","score":0.00559999980032444,"subfield":{"id":"https://openalex.org/subfields/2508","display_name":"Surfaces, Coatings and Films"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3368668556213379}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3368668556213379}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:zenodo.org:4923277","is_oa":true,"landing_page_url":"https://zenodo.org/record/4923277","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},{"id":"mag:3194222750","is_oa":false,"landing_page_url":"https://juser.fz-juelich.de/record/894132/export/he?ln=en","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:zenodo.org:4923277","is_oa":true,"landing_page_url":"https://zenodo.org/record/4923277","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10","score":0.5400000214576721}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"\\n\\n\\nHomepage:":[0],"https://libertem.github.io/LiberTEM/GitHub":[1],"repository:":[2],"https://github.com/LiberTEM/LiberTEM/PyPI:":[3],"https://pypi.org/project/libertem/LiberTEM":[4],"is":[5,29,51,167,262,288,372,491,510,558,674,685,705],"an":[6,44,105,160,429,484,665],"open":[7],"source":[8,300],"platform":[9],"for":[10,199,309,324,326,334,361,382,439,450,498,534,540,582,593,615,664,676,679,700,725],"high-throughput":[11],"distributed":[12],"processing\\nof":[13],"large-scale":[14,547],"binary":[15,595],"data":[16,20,110,183,328,363,390,392,502,526,590],"sets":[17],"and":[18,35,59,79,117,125,189,211,218,252,269,278,340,350,391,443,457,513,536,545,570,591,611,625,654],"live":[19,170,182,362,501,525,677],"streams":[21],"using":[22],"a":[23,64,96,173,177,241,255,291,331,335,347,383,494,687],"modified\\nMapReduce":[24],"programming":[25],"model.":[26],"The\\ncurrent":[27],"focus":[28],"pixelated\\nscanning":[30],"transmission":[31],"electron":[32,417],"microscopy":[33],"(STEM)\\n":[34],"scanning":[36],"electron\\nbeam":[37],"diffraction":[38],"data.\\nMapReduce-like":[39],"processing":[40,82,166,181,188,329,386,496],"allows":[41],"to":[42,100,553,564],"specify":[43],"algorithm":[45,106],"through":[46,374,428],"two":[47],"functions:\\nOne":[48],"function":[49],"that":[50,273],"mapped":[52],"on":[53,154,202,213,229,240,264,330,346,388,524,588,703],"portions":[54],"of":[55,77,93,104,109,114,128,135,149,165,275,385,407,413,423,543,622],"the":[56,72,129,140,279,468,476,555,669,680,716,723],"input":[57,130],"data,":[58,131],"another":[60],"function\\nthat":[61],"merges":[62],"(reduces)":[63],"partial":[65],"result":[66],"from":[67,107,172,246,630],"this":[68,163],"mapping":[69],"step":[70,158],"into":[71],"complete\\nresult.":[73],"A":[74],"wide":[75],"range":[76,148],"TEM":[78],"4D":[80],"STEM":[81],"tasks":[83,387],"can":[84,119,143,192,224,257,341,379,447],"be":[85,120,144,193,258,342,380,448],"expressed":[86],"in\\nthis":[87],"fashion,":[88],"see":[89,321,356,369,434,719],"Applications.\\nThe":[90],"UDF":[91,204],"interface":[92],"LiberTEM":[94,206,371],"offers":[95,208],"standardized,":[97],"versatile":[98],"API":[99,442],"decouple\\nthe":[101],"mathematical":[102],"core":[103],"details":[108,201,702],"source,":[111],"parallelism,\\nand":[112],"use":[113,225],"results.":[115],"Mapping":[116],"merging":[118],"performed":[121],"in":[122,146,176,254,260,290,467,662,686,696,722],"any":[123],"order":[124],"with\\ndifferent":[126],"subdivisions":[127],"including":[132,151,500],"running":[133,174,289,475],"parts":[134,711],"the\\ncalculation":[136],"concurrently.":[137],"That":[138,232],"means":[139],"same":[141],"implementation":[142],"used":[145,259,381,449,581],"a\\nwide":[147],"modalities,":[150],"massive":[152],"scaling":[153],"clusters.":[155],"Since":[156],"each\\nmerge":[157],"produces":[159],"intermediate":[161],"result,":[162],"style":[164],"suitable\\nfor":[168],"displaying":[169],"results":[171],"calculation":[175],"GUI":[178],"application":[179],"and\\nfor":[180],"streams.\\nA":[184],"closed-loop":[185],"feedback":[186],"between":[187],"instrument":[190],"control":[191],"realized\\nas":[194],"well.":[195,286],"See":[196,312,585,698],"User-defined":[197],"functions":[198,376,445],"more":[200,701],"the\\nLiberTEM":[203],"interface.\\nThe":[205],"back-end":[207],"high":[209],"throughput":[210],"scalability":[212],"PCs,":[214],"single":[215],"server\\nnodes,":[216],"clusters":[217,222],"cloud":[219],"services.":[220],"On":[221],"it":[223,234,378],"fast":[226],"distributed\\nlocal":[227],"storage":[228],"high-performance":[230,495],"SSDs.":[231],"way":[233],"achieves":[235],"very":[236],"high\\naggregate":[237],"IO":[238],"performance":[239],"compact":[242],"and\\ncost-efficient":[243],"system":[244,256,333],"built":[245],"stock":[247],"components.":[248],"All":[249],"CPU":[250],"cores":[251],"CUDA\\ndevices":[253],"parallel.\\nLiberTEM":[261],"supported":[263,675],"Linux,":[265],"Mac":[266],"OS":[267],"X":[268],"Windows.":[270],"Other":[271],"platforms":[272],"allow\\ninstallation":[274],"Python":[276,441],"3.6+":[277],"required":[280],"packages":[281],"will":[282],"likely":[283],"work":[284],"as":[285,367,453,493,650],"The\\nGUI":[287],"web":[292,431],"browser.\\n\\nInstallationThe":[293],"short":[294],"version:\\n$":[295],"virtualenv":[296],"-p":[297],"python3":[298],"~/libertem-venv/\\n$":[299],"~/libertem-venv/bin/activate\\n(libertem-venv)":[301],"$":[302,315],"python":[303,316],"-m":[304,317],"pip":[305,318],"install":[306,319],"\"libertem[torch]\"\\n\\n#":[307],"optional":[308],"GPU":[310],"support\\n#":[311],"also":[313,713],"https://docs.cupy.dev/en/stable/install.html\\n(libertem-venv)":[314],"cupy\\n\\nPlease":[320],"our":[322,437,488,571],"documentation":[323,438],"details!\\nDeployment":[325],"offline":[327],"single-node":[332],"local":[336],"user\\nis":[337],"thoroughly":[338],"tested":[339],"considered":[343],"stable.":[344],"Deployment":[345],"cluster":[348],"is\\nexperimental":[349],"still":[351,365,638],"requires":[352],"some":[353],"additional":[354,666],"work,":[355],"Issue":[357],"#105.":[358],"Back-end":[359],"support":[360,533,663],"processing\\nis":[364],"experimental":[366],"well,":[368],"https://github.com/LiberTEM/LiberTEM-live.\\n\\n\\nApplicationsSince":[370],"programmable":[373],"user-defined":[375,444],"(UDFs),":[377],"wide\\nrange":[384],"array-like":[389],"streams.":[393,503],"The":[394,709],"following\\napplications":[395],"have":[396],"been":[397],"implemented":[398],"already:\\n\\nVirtual":[399],"detectors":[400],"(virtual":[401],"bright":[402],"field,":[403],"virtual":[404],"HAADF,":[405],"center":[406],"mass":[408],",\\ncustom":[409],"shapes":[410],"via":[411],"masks)\\nAnalysis":[412],"amorphous":[414],"materials\\nStrain":[415],"mapping\\nOff-axis":[416],"holography":[418],"reconstruction\\nSingle":[419],"Side":[420],"Band":[421],"ptychography\\n\\nSome":[422],"these":[424],"applications":[425,542],"are":[426,465,473,508,522,660,694,712],"available":[427,466,714],"interactive":[430],"GUI.":[432],"Please":[433],"the\\napplications":[435],"section\\nof":[436],"details!\\nThe":[440],"(UDFs)":[446],"complex\\noperations":[451],"such":[452,649],"arbitrary":[454],"linear":[455],"operations":[456],"other":[458,546],"features":[459,515],"like":[460,552,563],"data\\nexport.":[461],"Example":[462],"Jupyter":[463],"notebooks":[464],"examples":[469],"directory.":[470],"If":[471,550],"you":[472,507,551,659,693],"having\\ntrouble":[474],"examples,":[477],"please":[478,566,718],"let":[479],"us":[480,505,657,691],"know":[481],"by":[482],"filing":[483],"issue":[485],"or\\nby":[486],"joining":[487],"Gitter":[489],"chat.\\nLiberTEM":[490],"suitable":[492],"backend":[497],"other\\napplications,":[499],"Contact":[504],"if":[506,561,658,692],"interested!\\nLiberTEM":[509],"evolving":[511],"rapidly":[512],"prioritizes":[514],"following":[516],"user":[517],"demand":[518],"and\\ncontributions.":[519],"Currently":[520],"we":[521],"working":[523],"processing,":[527],"integration":[528],"with":[529],"Dask":[530],"arrays":[531],"and\\nHyperspy,":[532],"sparse\\ndata,":[535],"implementing":[537],"analysis":[538],"methods":[539],"various":[541],"pixelated\\nSTEM":[544],"detector":[548,599],"data.":[549],"influence":[554],"direction\\nthis":[556],"project":[557],"taking,":[559],"or":[560],"you'd":[562],"contribute,":[565],"join":[567],"our\\ngitter":[568],"chat":[569],"general":[572],"mailing":[573],"list.\\n\\n\\nFile":[574],"formatsLiberTEM":[575],"currently":[576],"opens":[577],"most":[578],"file":[579],"formats":[580,648],"pixelated":[583],"STEM.":[584],"our\\ngeneral":[586],"information":[587],"loading":[589],"format-specific\\ndocumentation":[592],"more\\ninformation!\\n\\nRaw":[594],"files\\nThermo":[596],"Fisher":[597],"EMPAD":[598],"files\\nQuantum":[600],"Detectors":[601,671],"MIB":[602],"format\\nNanomegas":[603],".blo":[604],"block":[605],"files\\nDirect":[606],"Electron":[607],"DE5":[608],"files":[609,614,627,643,721],"(HDF5-based)":[610],"Norpix":[612],"SEQ":[613],"DE-Series":[616],"detectors\\nGatan":[617],"K2":[618,682],"IS":[619,683],"raw":[620],"format\\nStacks":[621],"Gatan":[623,681],"DM3":[624],"DM4":[626],"(via":[628,644,646],"openNCEM)\\nFRMS6":[629],"PNDetector":[631],"pnCCD":[632],"cameras":[633],"(currently":[634],"alpha,":[635],"gain":[636],"correction":[637],"needs":[639],"UI":[640],"changes)\\nFEI":[641],"SER":[642],"openNCEM)\\nMRC":[645],"openNCEM)\\nHDF5-based":[647],"Hyperspy":[651],"files,":[652],"NeXus":[653],"EMD\\nPlease":[655],"contact":[656],"interested":[661,695],"format!\\n\\n\\n\\nDetectors":[667],"(experimental)Currently":[668],"Quantum":[670],"Merlin":[672],"camera":[673,684],"processing.\\nSupport":[678],"prototype":[688],"state.":[689],"Please\\ncontact":[690],"this\\nfeature!":[697],"https://github.com/LiberTEM/LiberTEM-live":[699],"live\\nprocessing.\\n\\n\\nLicenseLiberTEM":[704],"licensed":[706],"under":[707,715],"GPLv3.":[708],"I/O":[710],"MIT\\nlicense,":[717],"LICENSE":[720],"subdirectories":[724],"details.\\n\\n":[726]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2026-05-03T08:25:01.440150","created_date":"2025-10-10T00:00:00"}
