{"id":"https://openalex.org/W3195666482","doi":"https://doi.org/10.5281/zenodo.4543704","title":"LiberTEM/LiberTEM: 0.6.0","display_name":"LiberTEM/LiberTEM: 0.6.0","publication_year":2021,"publication_date":"2021-02-16","ids":{"openalex":"https://openalex.org/W3195666482","doi":"https://doi.org/10.5281/zenodo.4543704","mag":"3195666482"},"language":"et","primary_location":{"id":"pmh:oai:zenodo.org:4543704","is_oa":true,"landing_page_url":"https://zenodo.org/record/4543704","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"type":"article","indexed_in":[],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/4543704","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084467878","display_name":"ClausenAlexander","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"ClausenAlexander","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028726843","display_name":"DeyShankhadeep","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"DeyShankhadeep","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059977176","display_name":"OphusColin","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"OphusColin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065580919","display_name":"RuzaevaKarina","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"RuzaevaKarina","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084243786","display_name":"CaronJan","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"CaronJan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006160431","display_name":"ChandraRahul","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"ChandraRahul","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038644015","display_name":"BaburajanAnand","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"BaburajanAnand","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034107573","display_name":"HalderSayandip","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"HalderSayandip","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022253917","display_name":"MigunovVadim","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"MigunovVadim","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036777080","display_name":"Dieter Weber","orcid":"https://orcid.org/0000-0001-6635-9567"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dieter Weber","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-6635-9567","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012496462","display_name":"BahuleyanAbijith","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"BahuleyanAbijith","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062976902","display_name":"ShinJaeweon","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"ShinJaeweon","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038916963","display_name":"S KatzDaniel","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"S KatzDaniel","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058578877","display_name":"SunkuSai","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"SunkuSai","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070996542","display_name":"NordMagnus","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"NordMagnus","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089042842","display_name":"Schyndel vanJay","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Schyndel vanJay","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019124968","display_name":"D A LevinBarnaby","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"D A LevinBarnaby","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073432215","display_name":"M\u00fcller-CasparyKnut","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M\u00fcller-CasparyKnut","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055608390","display_name":"E Dunin-BorkowskiRafal","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"E Dunin-BorkowskiRafal","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5042704657","display_name":"PeterSimon","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"PeterSimon","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":20,"corresponding_author_ids":["https://openalex.org/A5084467878"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0938233,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.819599986076355,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.819599986076355,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.01899999938905239,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12039","display_name":"Electron and X-Ray Spectroscopy Techniques","score":0.009600000455975533,"subfield":{"id":"https://openalex.org/subfields/2508","display_name":"Surfaces, Coatings and Films"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3507625162601471}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3507625162601471}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:zenodo.org:4543704","is_oa":true,"landing_page_url":"https://zenodo.org/record/4543704","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},{"id":"mag:3195666482","is_oa":false,"landing_page_url":"https://juser.fz-juelich.de/record/894131?ln=en","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:zenodo.org:4543704","is_oa":true,"landing_page_url":"https://zenodo.org/record/4543704","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"sustainable_development_goals":[{"score":0.5299999713897705,"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Homepage:":[0],"https://libertem.github.io/LiberTEM/\\nGitHub":[1],"repository:":[2],"https://github.com/LiberTEM/LiberTEM/\\nPyPI:":[3],"https://pypi.org/project/libertem/\\n\\nLiberTEM":[4],"is":[5,28,41,102,130,173,185,285,305,349,463],"an":[6,277,460],"open":[7],"source":[8,142],"platform":[9],"for":[10,43,151,163,169,228,239,292,329,374,387,410,459,484],"high-throughput":[11],"distributed":[12,63],"processing":[13,290],"of":[14,116,203,210,225,332,417],"large-scale":[15,337],"binary":[16,390],"data":[17,250,297,383],"sets":[18],"using":[19],"a":[20,79,95,133,166,170,183,288],"simplified":[21],"MapReduce":[22],"programming":[23],"model.":[24],"The":[25,128,467],"current":[26],"focus":[27],"pixelated":[29,333,375],"scanning":[30,36],"transmission":[31],"electron":[32,37,218],"microscopy":[33],"(STEM)":[34],"and":[35,46,54,81,91,109,119,176,187,232,246,308,314,325,335,362,384,406,420,449],"beam":[38],"diffraction":[39],"data.\\n\\nIt":[40],"designed":[42],"high":[44,74],"throughput":[45],"scalability":[47],"on":[48,66,78,104,182,381],"PCs,":[49],"single":[50],"server":[51],"nodes,":[52],"clusters":[53,58],"cloud":[55],"services.":[56],"On":[57],"it":[59,71],"can":[60,97,177,236],"use":[61],"fast":[62],"local":[64,171],"storage":[65],"high-performance":[67,289],"SSDs.":[68],"That":[69],"way":[70],"achieves":[72],"very":[73],"aggregate":[75],"IO":[76],"performance":[77],"compact":[80],"cost-efficient":[82],"system":[83,96,168],"built":[84],"from":[85,425],"stock":[86],"components.":[87],"All":[88],"CPU":[89],"cores":[90],"CUDA":[92],"devices":[93],"in":[94,100,132,258,457,481],"be":[98,178,237],"used":[99,238,373],"parallel.\\n\\nLiberTEM":[101],"supported":[103],"Linux,":[105],"Mac":[106],"OS":[107],"X":[108],"Windows.":[110],"Other":[111],"platforms":[112],"that":[113],"allow":[114],"installation":[115],"Python":[117,230],"3.6+":[118],"the":[120,222,259,268,317,345,474,482],"required":[121],"packages":[122],"will":[123],"likely":[124],"work":[125],"as":[126,165,287,445],"well.":[127],"GUI":[129],"running":[131,267],"web":[134],"browser.\\n\\nInstallation\\n\\nThe":[135],"short":[136],"version:\\n\\n$":[137],"virtualenv":[138],"-p":[139],"python3":[140],"~/libertem-venv/\\n$":[141],"~/libertem-venv/bin/activate\\n(libertem)":[143],"$":[144,154],"python":[145,155],"-m":[146,156],"pip":[147,157],"install":[148,158],"\"libertem[torch]\"\\n\\n#":[149],"optional":[150],"GPU":[152],"support\\n(libertem)":[153],"cupy\\n\\n\\nPlease":[159],"see":[160,193,221,478],"our":[161,226,282,359,363,378],"documentation":[162,227,386],"details!\\n\\nDeployment":[164],"single-node":[167],"user":[172,312],"thoroughly":[174],"tested":[175],"considered":[179],"stable.":[180],"Deployment":[181],"cluster":[184],"experimental":[186],"still":[188,433],"requires":[189],"some":[190],"additional":[191,461],"work,":[192],"Issue":[194],"#105.\\n\\nApplications\\n\\n\\n\\tVirtual":[195],"detectors":[196],"(virtual":[197],"bright":[198],"field,":[199],"virtual":[200],"HAADF,":[201],"center":[202],"mass":[204],",":[205],"custom":[206],"shapes":[207],"via":[208],"masks)\\n\\tAnalysis":[209],"amorphous":[211],"materials\\n\\tStrain":[212],"mapping\\n\\tCustom":[213],"analysis":[214,327],"functions":[215,234],"(user-defined":[216],"functions)\\n\\tOff-axis":[217],"holography":[219],"reconstruction\\n\\n\\nPlease":[220],"applications":[223,331],"section":[224],"details!\\n\\nThe":[229],"API":[231],"user-defined":[233],"(UDFs)":[235],"more":[240,326,388],"complex":[241],"operations":[242],"with":[243],"arbitrary":[244],"masks":[245],"other":[247,293,336],"features":[248,310],"like":[249,320,342,354],"export.":[251],"There":[252],"are":[253,264,303,455,470],"example":[254],"Jupyter":[255],"notebooks":[256],"available":[257,472],"examples":[260],"directory.":[261],"If":[262,340],"you":[263,302,341,454],"having":[265],"trouble":[266],"examples,":[269],"please":[270,357,477],"let":[271],"us":[272,300,452],"know,":[273],"either":[274],"by":[275,280],"filing":[276],"issue":[278],"or":[279,351],"joining":[281],"Gitter":[283],"chat.\\n\\nLiberTEM":[284],"suitable":[286],"backend":[291],"applications,":[294],"including":[295],"live":[296,323],"streams.":[298],"Contact":[299],"if":[301,352,453],"interested!\\n\\nLiberTEM":[304],"evolving":[306],"rapidly":[307],"prioritizes":[309],"following":[311],"demand":[313],"contributions.":[315],"In":[316],"future":[318],"we'd":[319],"to":[321,343,355],"implement":[322],"acquisition,":[324],"methods":[328],"all":[330],"STEM":[334],"detector":[338,394],"data.":[339],"influence":[344],"direction":[346],"this":[347],"project":[348],"taking,":[350],"you'd":[353],"contribute,":[356],"join":[358],"gitter":[360],"chat":[361],"general":[364,379],"mailing":[365],"list.\\n\\nFile":[366],"formats\\n\\nLiberTEM":[367],"currently":[368],"opens":[369],"most":[370],"file":[371],"formats":[372,443],"STEM.":[376],"See":[377],"information":[380],"loading":[382],"format-specific":[385],"information!\\n\\n\\n\\tRaw":[389],"files\\n\\tThermo":[391],"Fisher":[392],"EMPAD":[393],"files\\n\\tQuantum":[395],"Detectors":[396],"MIB":[397],"format\\n\\tNanomegas":[398],".blo":[399],"block":[400],"files\\n\\tDirect":[401],"Electron":[402],"DE5":[403],"files":[404,409,422,438,480],"(HDF5-based)":[405],"Norpix":[407],"SEQ":[408],"DE-Series":[411],"detectors\\n\\tGatan":[412],"K2":[413],"IS":[414],"raw":[415],"format\\n\\tStacks":[416],"Gatan":[418],"DM3":[419],"DM4":[421],"(via":[423,439,441],"openNCEM)\\n\\tFRMS6":[424],"PNDetector":[426],"pnCCD":[427],"cameras":[428],"(currently":[429],"alpha,":[430],"gain":[431],"correction":[432],"needs":[434],"UI":[435],"changes)\\n\\tFEI":[436],"SER":[437],"openNCEM)\\n\\tMRC":[440],"openNCEM)\\n\\tHDF5-based":[442],"such":[444],"Hyperspy":[446],"files,":[447],"NeXus":[448],"EMD\\n\\tPlease":[450],"contact":[451],"interested":[456],"support":[458],"format!\\n\\n\\nLicense\\n\\nLiberTEM":[462],"licensed":[464],"under":[465,473],"GPLv3.":[466],"I/O":[468],"parts":[469],"also":[471],"MIT":[475],"license,":[476],"LICENSE":[479],"subdirectories":[483],"details.":[485]},"counts_by_year":[],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2021-08-30T00:00:00"}
