{"id":"https://openalex.org/W3207642329","doi":"https://doi.org/10.5281/zenodo.3789644","title":"Pretrained 3D U-Net models for COVID-19 CT Lung and Infection Segmentation","display_name":"Pretrained 3D U-Net models for COVID-19 CT Lung and Infection Segmentation","publication_year":2020,"publication_date":"2020-05-06","ids":{"openalex":"https://openalex.org/W3207642329","doi":"https://doi.org/10.5281/zenodo.3789644","mag":"3207642329"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:3789644","is_oa":true,"landing_page_url":"https://zenodo.org/record/3789644","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/3789644","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100748297","display_name":"Jun Ma","orcid":"https://orcid.org/0000-0002-3823-8714"},"institutions":[{"id":"https://openalex.org/I36399199","display_name":"Nanjing University of Science and Technology","ror":"https://ror.org/00xp9wg62","country_code":"CN","type":"education","lineage":["https://openalex.org/I36399199"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ma, Jun","raw_affiliation_strings":["Department of Mathematics, Nanjing University of Science and Technology"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Nanjing University of Science and Technology","institution_ids":["https://openalex.org/I36399199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100328544","display_name":"Yixin Wang","orcid":"https://orcid.org/0000-0002-8062-0765"},"institutions":[{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wang, Yixin","raw_affiliation_strings":["Institute of Computing Technology, Chinese Academy of Sciences;University of Chinese Academy of Sciences"],"affiliations":[{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences;University of Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210090176","https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020907361","display_name":"Xingle An","orcid":null},"institutions":[{"id":"https://openalex.org/I4210144487","display_name":"Cloud Computing Center","ror":"https://ror.org/04aa0zm65","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210144487"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"An, Xingle","raw_affiliation_strings":["China Electronics Cloud Brain (Tianjin) Technology CO., LTD"],"affiliations":[{"raw_affiliation_string":"China Electronics Cloud Brain (Tianjin) Technology CO., LTD","institution_ids":["https://openalex.org/I4210144487"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032901303","display_name":"Cheng Ge","orcid":"https://orcid.org/0000-0003-4010-5686"},"institutions":[{"id":"https://openalex.org/I4210144214","display_name":"Jiangsu University of Technology","ror":"https://ror.org/04jabhf80","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210144214"]},{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]}],"countries":["CN","IN"],"is_corresponding":false,"raw_author_name":"Ge, Cheng","raw_affiliation_strings":["Institute of Bioinformatics and Medical Engineering, Jiangsu University of Technology"],"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics and Medical Engineering, Jiangsu University of Technology","institution_ids":["https://openalex.org/I4210144214","https://openalex.org/I4210148697"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071592293","display_name":"Ziqi Yu","orcid":"https://orcid.org/0000-0001-8201-5481"},"institutions":[{"id":"https://openalex.org/I4210164150","display_name":"Shanghai Center for Brain Science and Brain-Inspired Technology","ror":"https://ror.org/0551a0y31","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210164150"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu, Ziqi","raw_affiliation_strings":["Institute of Science and Technology for Brain-inspired Intelligence, Fudan University"],"affiliations":[{"raw_affiliation_string":"Institute of Science and Technology for Brain-inspired Intelligence, Fudan University","institution_ids":["https://openalex.org/I4210164150","https://openalex.org/I24943067"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100748297"],"corresponding_institution_ids":["https://openalex.org/I36399199"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11775","display_name":"COVID-19 diagnosis using AI","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9865000247955322,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.7301465272903442},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.5000038146972656},{"id":"https://openalex.org/keywords/coronavirus-infections","display_name":"Coronavirus Infections","score":0.47957295179367065},{"id":"https://openalex.org/keywords/2019-20-coronavirus-outbreak","display_name":"2019-20 coronavirus outbreak","score":0.47728386521339417},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.4575144648551941},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.4116445481777191},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.3856715261936188},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33514153957366943},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3229057788848877},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.1962054967880249},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.09737372398376465},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.09444308280944824},{"id":"https://openalex.org/keywords/outbreak","display_name":"Outbreak","score":0.09149420261383057}],"concepts":[{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.7301465272903442},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.5000038146972656},{"id":"https://openalex.org/C2909376813","wikidata":"https://www.wikidata.org/wiki/Q57751738","display_name":"Coronavirus Infections","level":5,"score":0.47957295179367065},{"id":"https://openalex.org/C3006700255","wikidata":"https://www.wikidata.org/wiki/Q81068910","display_name":"2019-20 coronavirus outbreak","level":3,"score":0.47728386521339417},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.4575144648551941},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.4116445481777191},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.3856715261936188},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33514153957366943},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3229057788848877},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.1962054967880249},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.09737372398376465},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.09444308280944824},{"id":"https://openalex.org/C116675565","wikidata":"https://www.wikidata.org/wiki/Q3241045","display_name":"Outbreak","level":2,"score":0.09149420261383057}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:zenodo.org:3789644","is_oa":true,"landing_page_url":"https://zenodo.org/record/3789644","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},{"id":"doi:10.5281/zenodo.3789644","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.3789644","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:3789644","is_oa":true,"landing_page_url":"https://zenodo.org/record/3789644","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.44999998807907104,"id":"https://metadata.un.org/sdg/2"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3111259926","https://openalex.org/W2923193390","https://openalex.org/W3186648530","https://openalex.org/W3201370025","https://openalex.org/W3163175932","https://openalex.org/W3174204163","https://openalex.org/W3095202012","https://openalex.org/W3208071741","https://openalex.org/W3181644688","https://openalex.org/W2982932370","https://openalex.org/W2901188035","https://openalex.org/W2904001791","https://openalex.org/W3198388724","https://openalex.org/W2793444752","https://openalex.org/W3015227730","https://openalex.org/W3208919116","https://openalex.org/W3210098703","https://openalex.org/W2765885420","https://openalex.org/W3131394574","https://openalex.org/W2936976591"],"abstract_inverted_index":{"We":[0],"provide":[1],"45":[2],"trained":[3],"3D":[4,30],"U-Net":[5],"baseline":[6],"models":[7,40],"for":[8,29,35],"COVID-19":[9],"CT":[10],"Lung":[11],"and":[12],"Infection":[13],"Segmentation":[14],"benchmark":[15],"(https://gitee.com/junma11/COVID-19-CT-Seg-Benchmark).":[16],"The":[17],"implementation":[18],"is":[19,24],"based":[20],"on":[21],"nnU-Net":[22],"that":[23],"an":[25],"out-of-the-box":[26],"segmentation":[27],"tool":[28],"biomedical":[31],"image":[32],"data.":[33],"Instructions":[34],"how":[36],"to":[37],"use":[38],"the":[39],"are":[41],"provided":[42],"at":[43,50],"https://github.com/MIC-DKFZ/nnUNet":[44],"Ground":[45],"truth":[46],"can":[47],"be":[48],"download":[49],"http://doi.org/10.5281/zenodo.3757476":[51]},"counts_by_year":[],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
