{"id":"https://openalex.org/W3211269387","doi":"https://doi.org/10.5281/zenodo.3374036","title":"Seq (OOPSLA 2019 Artifact)","display_name":"Seq (OOPSLA 2019 Artifact)","publication_year":2019,"publication_date":"2019-08-21","ids":{"openalex":"https://openalex.org/W3211269387","doi":"https://doi.org/10.5281/zenodo.3374036","mag":"3211269387"},"language":"en","primary_location":{"id":"pmh:oai:figshare.com:article/11628564","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Software"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":null,"any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061029430","display_name":"Ariya Shajii","orcid":"https://orcid.org/0000-0002-6163-1848"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Shajii, Ariya","raw_affiliation_strings":["MIT CSAIL"],"affiliations":[{"raw_affiliation_string":"MIT CSAIL","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060847860","display_name":"Ibrahim Numanagi\u0107","orcid":"https://orcid.org/0000-0002-2970-7937"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Numanagi\u0107, Ibrahim","raw_affiliation_strings":["MIT CSAIL"],"affiliations":[{"raw_affiliation_string":"MIT CSAIL","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044704994","display_name":"Riyadh Baghdadi","orcid":"https://orcid.org/0000-0002-9350-3998"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Baghdadi, Riyadh","raw_affiliation_strings":["MIT CSAIL"],"affiliations":[{"raw_affiliation_string":"MIT CSAIL","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044078921","display_name":"Bonnie Berger","orcid":"https://orcid.org/0000-0002-2724-7228"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Berger, Bonnie","raw_affiliation_strings":["MIT CSAIL"],"affiliations":[{"raw_affiliation_string":"MIT CSAIL","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046791216","display_name":"Saman Amarasinghe","orcid":"https://orcid.org/0000-0002-7231-7643"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Amarasinghe, Saman","raw_affiliation_strings":["MIT CSAIL"],"affiliations":[{"raw_affiliation_string":"MIT CSAIL","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5061029430"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.5979999899864197,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.5979999899864197,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.1103999987244606,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.051899999380111694,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artifact","display_name":"Artifact (error)","score":0.8226138353347778},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5208373665809631},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2751358151435852}],"concepts":[{"id":"https://openalex.org/C2779010991","wikidata":"https://www.wikidata.org/wiki/Q2720909","display_name":"Artifact (error)","level":2,"score":0.8226138353347778},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5208373665809631},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2751358151435852}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:figshare.com:article/11628564","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Software"},{"id":"doi:10.5281/zenodo.3374036","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.3374036","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"},{"id":"mag:3211269387","is_oa":false,"landing_page_url":"https://zenodo.org/record/3374036","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:figshare.com:article/11628564","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Software"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W1980876149","https://openalex.org/W3106297629","https://openalex.org/W2013673681","https://openalex.org/W2150277242","https://openalex.org/W2167101389","https://openalex.org/W2912039166","https://openalex.org/W2855820235","https://openalex.org/W1745257409","https://openalex.org/W850055674","https://openalex.org/W2174721749","https://openalex.org/W2043506880","https://openalex.org/W27573866","https://openalex.org/W2401940508","https://openalex.org/W2022333719","https://openalex.org/W3021225599","https://openalex.org/W168114642","https://openalex.org/W2002815259","https://openalex.org/W2002437590"],"abstract_inverted_index":{"This":[0],"is":[1,30],"the":[2,6],"artifact":[3],"submitted":[4],"alongside":[5],"Seq":[7,29,51],"paper":[8],"to":[9,67],"OOPSLA":[10],"2019,":[11],"which":[12],"consists":[13],"of":[14,21,46],"a":[15,26,31,40,44],"VM":[16],"containing":[17],"an":[18],"alpha":[19],"build":[20],"Seq,":[22],"as":[23,25,57,59],"well":[24],"usage":[27],"guide.":[28],"programming":[32],"language":[33],"for":[34],"computational":[35],"genomics":[36,55],"and":[37,43,49,63],"bioinformatics.":[38],"With":[39],"Python-compatible":[41],"syntax":[42],"host":[45],"domain-specific":[47],"features":[48],"optimizations,":[50],"makes":[52],"writing":[53,60],"high-performance":[54],"software":[56],"easy":[58],"Python":[61],"code,":[62],"achieves":[64],"performance":[65],"comparable":[66],"(and":[68],"in":[69],"many":[70],"cases":[71],"better":[72],"than)":[73],"C/C++.":[74],"http://seq.csail.mit.edu":[75]},"counts_by_year":[],"updated_date":"2026-03-03T08:47:05.690250","created_date":"2025-10-10T00:00:00"}
