{"id":"https://openalex.org/W7131119461","doi":"https://doi.org/10.5281/zenodo.18743013","title":"Citation Matrix and Metadata Derived from the PKG24S4 Database","display_name":"Citation Matrix and Metadata Derived from the PKG24S4 Database","publication_year":2026,"publication_date":"2026-02-23","ids":{"openalex":"https://openalex.org/W7131119461","doi":"https://doi.org/10.5281/zenodo.18743013"},"language":null,"primary_location":{"id":"doi:10.5281/zenodo.18743013","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.18743013","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.18743013","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103043214","display_name":"Laura Menotti","orcid":"https://orcid.org/0000-0002-0676-682X"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Menotti, Laura","raw_affiliation_strings":["University of Padua"],"raw_orcid":"https://orcid.org/0000-0002-0676-682X","affiliations":[{"raw_affiliation_string":"University of Padua","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5098947055","display_name":"Mirco Cazzaro","orcid":"https://orcid.org/0009-0006-3856-7207"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Cazzaro, Mirco","raw_affiliation_strings":["University of Padua"],"raw_orcid":"https://orcid.org/0009-0006-3856-7207","affiliations":[{"raw_affiliation_string":"University of Padua","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078254809","display_name":"Gianmaria Silvello","orcid":"https://orcid.org/0000-0003-4970-4554"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Silvello, Gianmaria","raw_affiliation_strings":["University of Padua"],"raw_orcid":"https://orcid.org/0000-0003-4970-4554","affiliations":[{"raw_affiliation_string":"University of Padua","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126125303","display_name":"Matteo Lissandrini","orcid":null},"institutions":[{"id":"https://openalex.org/I119439378","display_name":"University of Verona","ror":"https://ror.org/039bp8j42","country_code":"IT","type":"education","lineage":["https://openalex.org/I119439378"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Lissandrini, Matteo","raw_affiliation_strings":["University of Verona"],"raw_orcid":"https://orcid.org/0000-0001-7922-5998","affiliations":[{"raw_affiliation_string":"University of Verona","institution_ids":["https://openalex.org/I119439378"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087078518","display_name":"Peter Buneman","orcid":"https://orcid.org/0009-0004-9056-8587"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Buneman, Peter","raw_affiliation_strings":["University of Edinburgh"],"raw_orcid":"https://orcid.org/0009-0004-9056-8587","affiliations":[{"raw_affiliation_string":"University of Edinburgh","institution_ids":["https://openalex.org/I98677209"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.7652999758720398},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.7645999789237976},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.6934999823570251},{"id":"https://openalex.org/keywords/citation","display_name":"Citation","score":0.5339999794960022},{"id":"https://openalex.org/keywords/data-element","display_name":"Data element","score":0.4650999903678894},{"id":"https://openalex.org/keywords/column","display_name":"Column (typography)","score":0.44290000200271606},{"id":"https://openalex.org/keywords/flat-file-database","display_name":"Flat file database","score":0.4415000081062317},{"id":"https://openalex.org/keywords/b-tree","display_name":"B-tree","score":0.4104999899864197}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7766000032424927},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.7652999758720398},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.7645999789237976},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.6934999823570251},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6255999803543091},{"id":"https://openalex.org/C2778805511","wikidata":"https://www.wikidata.org/wiki/Q1713","display_name":"Citation","level":2,"score":0.5339999794960022},{"id":"https://openalex.org/C30872290","wikidata":"https://www.wikidata.org/wiki/Q1172389","display_name":"Data element","level":3,"score":0.4650999903678894},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.45750001072883606},{"id":"https://openalex.org/C2780551164","wikidata":"https://www.wikidata.org/wiki/Q2306599","display_name":"Column (typography)","level":3,"score":0.44290000200271606},{"id":"https://openalex.org/C201743585","wikidata":"https://www.wikidata.org/wiki/Q1373925","display_name":"Flat file database","level":5,"score":0.4415000081062317},{"id":"https://openalex.org/C78669399","wikidata":"https://www.wikidata.org/wiki/Q677051","display_name":"B-tree","level":3,"score":0.4104999899864197},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37599998712539673},{"id":"https://openalex.org/C5655090","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database","level":2,"score":0.3749000132083893},{"id":"https://openalex.org/C135598885","wikidata":"https://www.wikidata.org/wiki/Q1366302","display_name":"Row","level":2,"score":0.36910000443458557},{"id":"https://openalex.org/C105345328","wikidata":"https://www.wikidata.org/wiki/Q206276","display_name":"Citation analysis","level":3,"score":0.3483000099658966},{"id":"https://openalex.org/C40350719","wikidata":"https://www.wikidata.org/wiki/Q2451637","display_name":"Torrent file","level":4,"score":0.3151000142097473},{"id":"https://openalex.org/C119839945","wikidata":"https://www.wikidata.org/wiki/Q6545185","display_name":"Unique identifier","level":3,"score":0.3066999912261963},{"id":"https://openalex.org/C106487976","wikidata":"https://www.wikidata.org/wiki/Q685816","display_name":"Matrix (chemical analysis)","level":2,"score":0.29440000653266907},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.2827000021934509},{"id":"https://openalex.org/C153048206","wikidata":"https://www.wikidata.org/wiki/Q3454922","display_name":"Metadata repository","level":3,"score":0.2703999876976013},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2651999890804291},{"id":"https://openalex.org/C178315738","wikidata":"https://www.wikidata.org/wiki/Q603441","display_name":"Bibliometrics","level":2,"score":0.26499998569488525},{"id":"https://openalex.org/C70000936","wikidata":"https://www.wikidata.org/wiki/Q4672467","display_name":"Access method","level":2,"score":0.2522999942302704},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.25060001015663147}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.18743013","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.18743013","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.18743013","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.18743013","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"This":[0,917],"repository":[1],"contains":[2,638,725],"sparse":[3],"matrices":[4,68],"and":[5,10,18,37,57,60,63,69,78,83,93,107,144,180,211,255,292,311,385,455,485,590,608,631,690,704,718,743,763,780,826,852,887,901,944],"auxiliary":[6],"tables":[7,116,616,717],"describing":[8],"citation":[9,40,59,115,149,186,359,407,883],"authorship":[11,61],"relations":[12],"among":[13],"biomedical":[14],"papers,":[15,91,103],"clinical":[16,54,94,105,164,201,245,298,545,554,559,565,798],"trials,":[17,55,106],"patents":[19,312,568,575],"derived":[20],"from":[21,547,551,569,574,602],"the":[22,50,148,169,174,181,185,206,212,217,222,227,229,250,256,261,270,277,284,303,314,335,351,391,398,406,415,432,435,446,458,470,475,479,489,511,612,648,655,676,715,719,729,863,905,926,930,950,957],"PKG24S4":[23,490,503],"version":[24],"of":[25,99,147,176,214,216,258,260,280,393,422,478,502,527,594,695,842,882,908,921,952],"PubMedKG":[26],"(PKG).":[27],"The":[28,344,358,461,500,658,766,832,933],"source":[29,336,352,677,864,931],"database":[30,337,353,492],"integrates":[31],"PubMed,":[32],"ClinicalTrials.gov,":[33],"USPTO":[34,570],"(via":[35],"PatentsView),":[36],"additional":[38],"open":[39],"resources":[41],"into":[42,66],"a":[43,777,870],"unified":[44],"relational":[45,491],"schema.":[46],"We":[47,88,135,426,487,508,596,681,701,868],"focus":[48,509],"on":[49,450,510,914],"core":[51],"entities":[52],"(papers,":[53],"patents)":[56],"their":[58],"links,":[62],"reorganize":[64],"them":[65,692,782,828],"machine\u2011readable":[67],"TSV":[70,138,154,191,235,429,443,463,660,834],"files":[71,464,935],"suitable":[72],"for":[73,159,196,240,373,380,387,438,687,728,776,796,823,939,946],"large\u2011scale":[74],"network":[75],"analysis,":[76],"scientometrics,":[77],"method":[79],"development":[80],"in":[81,96,114,184,226,334,350,363,397,405,457,542,675,714,862,929,956],"bibliometrics":[82],"science\u2011of\u2011science":[84],"research.":[85],"Data":[86,481,484],"Statistics":[87],"consider":[89],"all":[90,403,774,821,876,922],"patents,":[92],"trials":[95,546,801],"PKG24S4,":[97],"consisting":[98,146],"40,363,572":[100,877],"nodes:":[101],"38,217,186":[102],"530,522":[104],"1,615,864":[108],"patents.":[109,585],"Nodes":[110],"that":[111,276,614,629,846],"appear":[112],"only":[113,647,706],"(C04,":[117],"C12,":[118],"C16)":[119],"but":[120],"lack":[121],"metadata":[122,142,516],"(in":[123],"C01,":[124],"C11,":[125],"or":[126,669,684,855],"C15)":[127],"are":[128,347,711,860,936],"retained":[129],"with":[130,156,193,237,313,324,434,448,564,584,641,792,802,845],"missing":[131],"metadata.":[132],"Files":[133,152],"Outline":[134],"share":[136],"five":[137],"files,":[139],"three":[140,370,880],"comprising":[141],"information":[143,267,449,680,727],"two":[145,462,739],"matrix.":[150],"Metadata":[151],"node_id_type.tsv:":[153],"file":[155,192,236,282,430,444],"one":[157,194,238,372,379,386,618,748,938,945],"row":[158,167,182,195,204,239,248,279,388,453,472,619,650,947],"each":[160,197,241,281,394,439,452,521,688,797,824,890,953],"node":[161,170,177,198,207,218,242,251,262,320,689],"(paper,":[162,199,243],"patent,":[163,200,244],"trial).":[165,202,246,560],"Each":[166,203,247],"reports":[168,205,249],"identifier":[171,208,252],"(first":[172,209,253],"column),":[173,179],"type":[175],"(second":[178,219,263],"id":[183],"matrix":[187,360,408,874],"(third":[188],"column).":[189,220,264],"node_year.tsv:":[190],"column)":[210,254],"year":[213,223,656,672],"publication":[215,595,598],"If":[221,265],"is":[224,232,268,273,283,361,424,504,673,756,764,808,815],"unavailable":[225,674,861],"database,":[228],"second":[230,271],"column":[231,272,382,436,784,814,830,941],"empty.":[233,274],"node_authors.tsv:":[234],"list":[257,526,533,841,857,907],"authors":[259,528,589,683,716,735,775,859],"author":[266,345,539,699,709,721],"unavailable,":[269],"Note":[275],"first":[278,471,476,649],"header":[285],"information.":[286],"Node":[287],"Identifiers":[288],"PKG":[289],"stores":[290],"PMIDs":[291,640],"patent":[293,825],"identifiers":[294,300,321,346,540],"as":[295,322,333,349,693,758],"integers,":[296],"while":[297,924],"trial":[299,555],"already":[301],"carry":[302],"prefix":[304],"\u201cNCT\u201d.":[305],"To":[306],"avoid":[307],"collisions":[308],"between":[309,588],"papers":[310,552,577],"same":[315,730],"numeric":[316],"ID,":[317],"we":[318,412,627,644,893],"normalize":[319],"strings":[323],"explicit":[325,812],"prefixes:":[326],"Papers:":[327,770],"PMID":[328,652,779],"(e.g.,":[329,338,342],"\u201cPMID245\u201d).":[330],"Clinical":[331,786],"trials:":[332,787],"\u201cNCT00887523\u201d).":[339],"Patents:":[340,817],"PTID":[341],"\u201cPTID123\u201d).":[343],"kept":[348],"(i.e.,":[354],"integers).":[355],"Citation":[356,866],"Matrix":[357,867],"shared":[362],"Compressed":[364],"Sparse":[365],"Row":[366],"(CSR)":[367],"format,":[368],"using":[369],"arrays:":[371],"non-zero":[374,440],"values":[375],"(called":[376],"*data":[377],"array*),":[378],"corresponding":[381,940],"indices":[383,459,942],"(`indices.tsv`),":[384],"pointers":[389,948],"indicating":[390,949],"start":[392,951],"row's":[395,954],"data":[396,417,955],"other":[399,958],"arrays":[400,959],"(`indptr.tsv`).":[401],"Since":[402],"edges":[404],"have":[409,736],"unit":[410],"weight,":[411],"can":[413,495],"omit":[414],"separate":[416],"array.":[418,460,480],"A":[419],"single":[420],"array":[421,447],"ones":[423],"sufficient.":[425],"share:":[427],"indices.tsv:":[428],"representing":[431,445],"arry":[433],"index":[437],"value":[441],"indptr.tsv:":[442],"where":[451],"starts":[454],"ends":[456],"do":[465],"not":[466,712],"contain":[467,617,633],"an":[468,759],"header,":[469],"corresponds":[473],"to":[474,523,553,576,903],"element":[477],"Construction":[482],"Source":[483],"Tables":[486],"use":[488],"(https://doi.org/10.1038/s41597-025-05343-8),":[493],"which":[494],"be":[496],"downloaded":[497],"at:":[498,506],"https://www.scidb.cn/en/detail?dataSetId=4.":[499],"documentation":[501],"available":[505],"https://github.com/PubMedKG/PubMedKG.github.io/.":[507],"following":[512],"tables:":[513],"C01Papers:":[514],"paper":[515,522],"(PubMed":[517],"articles).":[518],"C02LinkPapersAuthors:":[519],"links":[520],"its":[524],"ordered":[525],"(AIDs).":[529,592],"C04ReferenceListPapers:":[530],"paper\u2011to\u2011paper":[531],"reference":[532],"(paper":[534,557],"citing":[535,558,579,891],"papers).":[536],"C07Authors:":[537],"disambiguated":[538,698],"(AID)":[541],"PKG.":[543],"C11ClinicalTrials:":[544],"ClinicalTrials.gov.":[548],"C12LinkPapersClinicaltrials:":[549],"citations":[550,573],"records":[556],"C14Investigators:":[561],"investigators":[562,791],"associated":[563,583,844],"trials.":[566],"C15Patents:":[567],"(PatentsView).":[571],"C16LinkPatentsPapers:":[572],"(patent":[578],"paper).":[580],"C19Inventors:":[581],"inventors":[582,591,822],"C20LinkAuthorsInventors:":[586],"mapping":[587],"Year":[593],"extract":[597,682],"(or":[599],"registration)":[600],"years":[601],"C01":[603,637],"(papers),":[604],"C11":[605,630],"(clinical":[606],"trials),":[607],"C15":[609,632],"(patents),":[610],"under":[611],"assumption":[613],"these":[615],"per":[620,651],"entity":[621],"after":[622,848],"deduplication.":[623],"During":[624],"quality":[625],"checks":[626],"observed":[628],"no":[634,811],"duplicates,":[635],"whereas":[636],"3,159":[639],"multiple":[642,803],"rows;":[643],"therefore":[645],"keep":[646,705],"when":[653],"creating":[654],"table.":[657],"resulting":[659,833,934],"node_year.tsv":[661],"has:":[662,836],"node_id:":[663,837],"normalized":[664,838],"identifier.":[665,839],"year:":[666],"four\u2011digit":[667],"year,":[668],"empty":[670,856],"if":[671,858],"tables.":[678,865,932],"Authors":[679],"analogous":[685],"contributors":[686],"store":[691],"lists":[694],"AIDs":[696,843],"(PKG\u2019s":[697],"IDs).":[700],"discard":[702],"names":[703,710],"AIDs,":[707],"since":[708,810],"stored":[713],"master":[720],"table":[722],"A02AuthorList":[723],"often":[724],"inconsistent":[726],"AID":[731,744,754,850],"(over":[732],"5":[733],"million":[734,749],"at":[737],"least":[738],"different":[740],"name":[741],"variants,":[742],"0":[745,755,851],"aggregates":[746],"over":[747,875],"distinct":[750],"names).":[751],"In":[752],"addition,":[753],"treated":[757],"invalid":[760],"\u201cunknown":[761],"author\u201d":[762],"discarded.":[765],"extraction":[767],"logic":[768],"is:":[769],"Use":[771,788,818],"`C02LinkPapersAuthors`,":[772],"selecting":[773,790,820],"given":[778],"ordering":[781,813,827],"by":[783,829],"AuthorOrder.":[785],"`C14Investigators`,":[789],"role":[793],"PRINCIPAL_INVESTIGATOR":[794],"(PI)":[795],"trial.":[799],"For":[800,889],"PIs":[804],"(37,791":[805],"cases),":[806],"order":[807],"arbitrary":[809],"provided.":[816],"`C19Inventors`,":[819],"InventorSequence.":[831],"node_authors.tsv":[835],"list_auth:":[840],"node,":[847,892],"removing":[849],"null":[853],"values,":[854],"construct":[869],"sparse,":[871],"directed":[872],"adjacency":[873],"nodes":[878],"capturing":[879],"types":[881],"edges:":[884],"paper\u2192paper,":[885],"paper\u2192clinical_trial,":[886],"patent\u2192paper.":[888],"ran":[894],"dedicated":[895],"SQL":[896],"queries":[897],"against":[898],"C04ReferenceListPapers,":[899],"C12LinkPapersClinicaltrials,":[900],"C16LinkPatentsPapers":[902],"retrieve":[904],"complete":[906],"cited":[909],"entities,":[910],"rather":[911],"than":[912],"relying":[913],"pre\u2011aggregated":[915],"views.":[916],"strategy":[918],"ensures":[919],"coverage":[920],"references":[923],"respecting":[925],"directional":[927],"semantics":[928],"two:":[937],"(indices.tsv),":[943],"(indptr.tsv).":[960]},"counts_by_year":[],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2026-02-24T00:00:00"}
