{"id":"https://openalex.org/W7128628133","doi":"https://doi.org/10.5281/zenodo.18614988","title":"FlashDeconv enables atlas-scale, multi-resolution spatial deconvolution via structure-preserving sketching","display_name":"FlashDeconv enables atlas-scale, multi-resolution spatial deconvolution via structure-preserving sketching","publication_year":2026,"publication_date":"2026-02-11","ids":{"openalex":"https://openalex.org/W7128628133","doi":"https://doi.org/10.5281/zenodo.18614988"},"language":null,"primary_location":{"id":"doi:10.5281/zenodo.18614988","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.18614988","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Software"},"type":"software","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.18614988","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Yang, Chen","orcid":"https://orcid.org/0009-0009-9151-2901"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yang, Chen","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0009-0009-9151-2901","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5125667035","display_name":"Jun Chen","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chen, Jun","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5125632738","display_name":"Xianyang Zhang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhang, Xianyang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/deconvolution","display_name":"Deconvolution","score":0.8873999714851379},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.6534000039100647},{"id":"https://openalex.org/keywords/estimator","display_name":"Estimator","score":0.5544999837875366},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.4796000123023987},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.43320000171661377},{"id":"https://openalex.org/keywords/spurious-relationship","display_name":"Spurious relationship","score":0.39559999108314514},{"id":"https://openalex.org/keywords/blind-deconvolution","display_name":"Blind deconvolution","score":0.3772999942302704}],"concepts":[{"id":"https://openalex.org/C174576160","wikidata":"https://www.wikidata.org/wiki/Q1183700","display_name":"Deconvolution","level":2,"score":0.8873999714851379},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6611999869346619},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.6534000039100647},{"id":"https://openalex.org/C185429906","wikidata":"https://www.wikidata.org/wiki/Q1130160","display_name":"Estimator","level":2,"score":0.5544999837875366},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.4796000123023987},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4618000090122223},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4496999979019165},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.43320000171661377},{"id":"https://openalex.org/C97256817","wikidata":"https://www.wikidata.org/wiki/Q1462316","display_name":"Spurious relationship","level":2,"score":0.39559999108314514},{"id":"https://openalex.org/C30044814","wikidata":"https://www.wikidata.org/wiki/Q11334452","display_name":"Blind deconvolution","level":3,"score":0.3772999942302704},{"id":"https://openalex.org/C99844830","wikidata":"https://www.wikidata.org/wiki/Q102441924","display_name":"Scaling","level":2,"score":0.37700000405311584},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34040001034736633},{"id":"https://openalex.org/C67226441","wikidata":"https://www.wikidata.org/wiki/Q1665389","display_name":"Robust statistics","level":3,"score":0.31520000100135803},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.2930999994277954},{"id":"https://openalex.org/C91682802","wikidata":"https://www.wikidata.org/wiki/Q620538","display_name":"Multidimensional scaling","level":2,"score":0.2842000126838684},{"id":"https://openalex.org/C56372850","wikidata":"https://www.wikidata.org/wiki/Q1050404","display_name":"Sparse matrix","level":3,"score":0.2793999910354614},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.2777999937534332},{"id":"https://openalex.org/C162984825","wikidata":"https://www.wikidata.org/wiki/Q339072","display_name":"Database normalization","level":3,"score":0.2721000015735626},{"id":"https://openalex.org/C24756922","wikidata":"https://www.wikidata.org/wiki/Q1757694","display_name":"Data quality","level":3,"score":0.25429999828338623},{"id":"https://openalex.org/C2983643213","wikidata":"https://www.wikidata.org/wiki/Q6030225","display_name":"Influence function","level":3,"score":0.2533999979496002}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.18614988","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.18614988","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Software"}],"best_oa_location":{"id":"doi:10.5281/zenodo.18614988","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.18614988","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Software"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"What's":[0],"Changed":[1],"New":[2],"Features":[3],"Add":[4,15,21,27,106,112,141],"rho_sparsity":[5,120],"parameter":[6,26],"to":[7,18,97,103,145],"deconvolve":[8,19],"function":[9,20],"for":[10,35],"L1":[11],"sparsity":[12],"penalty":[13],"control":[14],"preprocess":[16],"option":[17],"reproducibility":[22],"support":[23],"with":[24,136],"random_state":[25],"Stereo-seq":[28],"platform":[29],"guide":[30,116],"Bug":[31],"Fixes":[32],"Fix":[33],"normalization":[34],"sparse":[36,48],"matrices":[37],"in":[38,53,63,130],"deconv":[39],"Handle":[40,47],"empty":[41],"inputs":[42],"and":[43,50,59,78,86,91,118,122,133,139],"validate":[44],"graph":[45,55],"coordinates":[46],"references":[49],"clamp":[51],"k":[52,57],"KNN":[54],"Clamp":[56],"bounds":[58],"use":[60],"clamped":[61],"min_k":[62],"estimator":[64],"Correct":[65],"Visium":[66],"HD":[67],"typical":[68],"UMI/spot":[69],"values":[70],"based":[71],"on":[72],"published":[73],"data":[74,114],"Improvements":[75],"Input":[76],"validation":[77],"robustness":[79,92],"fixes":[80],"across":[81],"modules":[82],"Validation,":[83],"dtype":[84],"fixes,":[85],"safe":[87],"correlation":[88],"handling":[89],"Performance":[90],"improvements":[93],"Change":[94,99],"lambda_spatial":[95],"default":[96],"auto":[98],"license":[100],"from":[101],"GPL-3.0":[102],"BSD-3-Clause":[104],"Documentation":[105],"comprehensive":[107],"spatial":[108],"deconvolution":[109,131],"tutorial":[110],"notebook":[111],"reference":[113],"quality":[115],"Clarify":[117],"standardize":[119],"scaling":[121],"docs":[123],"Document":[124],"the":[125],"impact":[126],"of":[127],"unknown":[128],"cells":[129],"Revise":[132],"expand":[134],"README":[135,146],"updated":[137],"features":[138],"benchmarks":[140],"Zenodo":[142],"DOI":[143],"badge":[144],"Full":[147],"Changelog:":[148],"https://github.com/cafferychen777/FlashDeconv/compare/v0.1.3...v0.1.6":[149]},"counts_by_year":[],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2026-02-12T00:00:00"}
