{"id":"https://openalex.org/W7130936525","doi":"https://doi.org/10.5281/zenodo.18592848","title":"Dynamics of cell states and alternative splicing following kidney ischemia-reperfusion injury - Supplementary Datasets","display_name":"Dynamics of cell states and alternative splicing following kidney ischemia-reperfusion injury - Supplementary Datasets","publication_year":2026,"publication_date":"2026-02-10","ids":{"openalex":"https://openalex.org/W7130936525","doi":"https://doi.org/10.5281/zenodo.18592848"},"language":null,"primary_location":{"id":"doi:10.5281/zenodo.18592848","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.18592848","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.18592848","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045121521","display_name":"Tomer Kalisky","orcid":"https://orcid.org/0000-0003-4733-262X"},"institutions":[{"id":"https://openalex.org/I13955877","display_name":"Bar-Ilan University","ror":"https://ror.org/03kgsv495","country_code":"IL","type":"education","lineage":["https://openalex.org/I13955877"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Kalisky, Tomer","raw_affiliation_strings":["Bar-Ilan University Faculty of Engineering","Bar-Ilan University"],"raw_orcid":"https://orcid.org/0000-0003-4733-262X","affiliations":[{"raw_affiliation_string":"Bar-Ilan University Faculty of Engineering","institution_ids":["https://openalex.org/I13955877"]},{"raw_affiliation_string":"Bar-Ilan University","institution_ids":["https://openalex.org/I13955877"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005409420","display_name":"Jacob Goldberger","orcid":"https://orcid.org/0000-0002-2225-1914"},"institutions":[{"id":"https://openalex.org/I13955877","display_name":"Bar-Ilan University","ror":"https://ror.org/03kgsv495","country_code":"IL","type":"education","lineage":["https://openalex.org/I13955877"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Goldberger, Jacob","raw_affiliation_strings":["Bar-Ilan University Faculty of Engineering"],"raw_orcid":"https://orcid.org/0000-0002-2225-1914","affiliations":[{"raw_affiliation_string":"Bar-Ilan University Faculty of Engineering","institution_ids":["https://openalex.org/I13955877"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5114418505","display_name":"Dana Markiewitz","orcid":null},"institutions":[{"id":"https://openalex.org/I13955877","display_name":"Bar-Ilan University","ror":"https://ror.org/03kgsv495","country_code":"IL","type":"education","lineage":["https://openalex.org/I13955877"]},{"id":"https://openalex.org/I4210123207","display_name":"Institute of Nanotechnology","ror":"https://ror.org/02ma7yv75","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I4210123207"]}],"countries":["GB","IL"],"is_corresponding":false,"raw_author_name":"Markiewitz, Dana","raw_affiliation_strings":["Bar-Ilan University Faculty of Engineering","Bar-Ilan Institute of Nanotechnology and Advanced Material"],"raw_orcid":"https://orcid.org/0009-0009-3124-6189","affiliations":[{"raw_affiliation_string":"Bar-Ilan University Faculty of Engineering","institution_ids":["https://openalex.org/I13955877"]},{"raw_affiliation_string":"Bar-Ilan Institute of Nanotechnology and Advanced Material","institution_ids":["https://openalex.org/I4210123207"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6700999736785889},{"id":"https://openalex.org/keywords/alternative-splicing","display_name":"Alternative splicing","score":0.6664999723434448},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.5827000141143799},{"id":"https://openalex.org/keywords/exon","display_name":"Exon","score":0.536899983882904},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.5317000150680542},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.4453999996185303},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.4223000109195709},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.35929998755455017}],"concepts":[{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6700999736785889},{"id":"https://openalex.org/C194583182","wikidata":"https://www.wikidata.org/wiki/Q21114084","display_name":"Alternative splicing","level":4,"score":0.6664999723434448},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6600000262260437},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.5827000141143799},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5810999870300293},{"id":"https://openalex.org/C36823959","wikidata":"https://www.wikidata.org/wiki/Q373027","display_name":"Exon","level":3,"score":0.536899983882904},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.5317000150680542},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.48809999227523804},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.4453999996185303},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.4223000109195709},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.36880001425743103},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.35929998755455017},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.3472000062465668},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.32850000262260437},{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.31949999928474426},{"id":"https://openalex.org/C171686336","wikidata":"https://www.wikidata.org/wiki/Q3532085","display_name":"Topic model","level":2,"score":0.3179999887943268},{"id":"https://openalex.org/C145912823","wikidata":"https://www.wikidata.org/wiki/Q113558","display_name":"Dynamics (music)","level":2,"score":0.2711000144481659},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.26930001378059387},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.26910001039505005},{"id":"https://openalex.org/C2778776201","wikidata":"https://www.wikidata.org/wiki/Q3474283","display_name":"Exon skipping","level":5,"score":0.2680000066757202},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.267300009727478},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.26159998774528503},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.258899986743927},{"id":"https://openalex.org/C176944494","wikidata":"https://www.wikidata.org/wiki/Q1415380","display_name":"Point mutation","level":4,"score":0.25699999928474426},{"id":"https://openalex.org/C28719098","wikidata":"https://www.wikidata.org/wiki/Q44946","display_name":"Point (geometry)","level":2,"score":0.25270000100135803}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.18592848","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.18592848","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.18592848","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.18592848","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Dataset":[0,17,34,56,69,82,95,108,121,156],"S1:":[1],"Gene":[2],"expression":[3],"counts":[4],"and":[5,26,47,53,141,150,165],"metadata":[6],"obtained":[7],"from":[8,41,152],"the":[9,42,51],"RNAseq":[10],"dataset":[11],"generated":[12],"by":[13,22],"Liu":[14],"et":[15],"al.":[16],"S2:":[18],"The":[19],"topics":[20],"discovered":[21],"topic":[23,67,80,93,106,119],"modeling":[24],"(\u201cfactors\u201d)":[25],"their":[27,147],"proportions":[28],"at":[29],"each":[30],"time":[31],"point":[32],"(\u201cloadings\u201d).":[33],"S3:":[35],"A":[36,123,158],"list":[37,124,159],"of":[38,125,160],"genes":[39,62,75,88,101,114],"compiled":[40],"literature":[43],"marking":[44],"cell":[45,48],"subtypes":[46],"states":[49],"in":[50,66,79,92,105,118,170],"healthy":[52],"injured":[54],"kidney.":[55],"S4:":[57],"GO":[58,71,84,97,110,153],"enrichment":[59,72,85,98,111,154],"analysis":[60,73,86,99,112],"for":[61,74,87,100,113],"that":[63,76,89,102,115,128,167],"are":[64,77,90,103,116],"over-expressed":[65,78,91,104,117],"k1.":[68],"S5:":[70],"k2.":[81],"S6:":[83],"k3.":[94],"S7:":[96],"k4.":[107],"S8:":[109],"k5.":[120],"S9:":[122],"cassette":[126],"exons":[127],"were":[129,168],"found":[130],"to":[131],"be":[132],"significantly":[133],"alternatively":[134],"spliced":[135],"following":[136],"IRI":[137],"(FDR":[138],"=":[139],"0":[140],",":[142],"Figure":[143],"2A),":[144],"along":[145],"with":[146],"inclusion":[148],"levels":[149],"results":[151],"analysis.":[155],"S10:":[157],"known":[161],"RNA":[162],"binding":[163],"proteins":[164],"motifs":[166],"examined":[169],"this":[171],"study.":[172]},"counts_by_year":[],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2026-02-23T00:00:00"}