{"id":"https://openalex.org/W7125673663","doi":"https://doi.org/10.5281/zenodo.18341705","title":"FPGA Hardware - Mycelium Growth Dataset","display_name":"FPGA Hardware - Mycelium Growth Dataset","publication_year":2026,"publication_date":"2026-01-22","ids":{"openalex":"https://openalex.org/W7125673663","doi":"https://doi.org/10.5281/zenodo.18341705"},"language":null,"primary_location":{"id":"pmh:doi:10.5281/zenodo.18341704","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":null,"any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5095706078","display_name":"Ioannis Tompris","orcid":null},"institutions":[{"id":"https://openalex.org/I147962203","display_name":"Democritus University of Thrace","ror":"https://ror.org/03bfqnx40","country_code":"GR","type":"education","lineage":["https://openalex.org/I147962203"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Tompris, Ioannis","raw_affiliation_strings":["Democritus University of Thrace"],"raw_orcid":"https://orcid.org/0009-0002-7189-9896","affiliations":[{"raw_affiliation_string":"Democritus University of Thrace","institution_ids":["https://openalex.org/I147962203"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040330806","display_name":"Ioannis K. Chatzipaschalis","orcid":"https://orcid.org/0000-0002-3468-4442"},"institutions":[{"id":"https://openalex.org/I147962203","display_name":"Democritus University of Thrace","ror":"https://ror.org/03bfqnx40","country_code":"GR","type":"education","lineage":["https://openalex.org/I147962203"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES","GR"],"is_corresponding":false,"raw_author_name":"Chatzipaschalis, Ioannis","raw_affiliation_strings":["Universitat Polit\u00e8cnica de Catalunya","Democritus University of Thrace"],"raw_orcid":"https://orcid.org/0000-0002-3468-4442","affiliations":[{"raw_affiliation_string":"Universitat Polit\u00e8cnica de Catalunya","institution_ids":["https://openalex.org/I9617848"]},{"raw_affiliation_string":"Democritus University of Thrace","institution_ids":["https://openalex.org/I147962203"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057075648","display_name":"Theodoros Panagiotis Chatzinikolaou","orcid":"https://orcid.org/0000-0002-2587-1895"},"institutions":[{"id":"https://openalex.org/I147962203","display_name":"Democritus University of Thrace","ror":"https://ror.org/03bfqnx40","country_code":"GR","type":"education","lineage":["https://openalex.org/I147962203"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Chatzinikolaou, Theodoros Panagiotis","raw_affiliation_strings":["Democritus University of Thrace"],"raw_orcid":"https://orcid.org/0000-0002-2587-1895","affiliations":[{"raw_affiliation_string":"Democritus University of Thrace","institution_ids":["https://openalex.org/I147962203"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106654641","display_name":"Pantelis Fraidakis","orcid":null},"institutions":[{"id":"https://openalex.org/I147962203","display_name":"Democritus University of Thrace","ror":"https://ror.org/03bfqnx40","country_code":"GR","type":"education","lineage":["https://openalex.org/I147962203"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Fraidakis, Pantelis","raw_affiliation_strings":["Democritus University of Thrace"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Democritus University of Thrace","institution_ids":["https://openalex.org/I147962203"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031060122","display_name":"G. Kleitsiotis","orcid":"https://orcid.org/0000-0002-4782-6390"},"institutions":[{"id":"https://openalex.org/I147962203","display_name":"Democritus University of Thrace","ror":"https://ror.org/03bfqnx40","country_code":"GR","type":"education","lineage":["https://openalex.org/I147962203"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Kleitsiotis, Georgios","raw_affiliation_strings":["Democritus University of Thrace"],"raw_orcid":"https://orcid.org/0000-0002-4782-6390","affiliations":[{"raw_affiliation_string":"Democritus University of Thrace","institution_ids":["https://openalex.org/I147962203"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032970945","display_name":"Iosif-Angelos Fyrigos","orcid":"https://orcid.org/0000-0001-8032-1725"},"institutions":[{"id":"https://openalex.org/I147962203","display_name":"Democritus University of Thrace","ror":"https://ror.org/03bfqnx40","country_code":"GR","type":"education","lineage":["https://openalex.org/I147962203"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Fyrigos, Iosif-Angelos","raw_affiliation_strings":["Democritus University of Thrace"],"raw_orcid":"https://orcid.org/0000-0001-8032-1725","affiliations":[{"raw_affiliation_string":"Democritus University of Thrace","institution_ids":["https://openalex.org/I147962203"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030851089","display_name":"Ioannis Vourkas","orcid":"https://orcid.org/0000-0002-7036-8092"},"institutions":[{"id":"https://openalex.org/I75778554","display_name":"Federico Santa Mar\u00eda Technical University","ror":"https://ror.org/05510vn56","country_code":"CL","type":"education","lineage":["https://openalex.org/I75778554"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Vourkas, Ioannis","raw_affiliation_strings":["Federico Santa Mar\u00eda Technical University"],"raw_orcid":"https://orcid.org/0000-0002-7036-8092","affiliations":[{"raw_affiliation_string":"Federico Santa Mar\u00eda Technical University","institution_ids":["https://openalex.org/I75778554"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5123877431","display_name":"Georgios Sirakoulis","orcid":null},"institutions":[{"id":"https://openalex.org/I147962203","display_name":"Democritus University of Thrace","ror":"https://ror.org/03bfqnx40","country_code":"GR","type":"education","lineage":["https://openalex.org/I147962203"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Sirakoulis, Georgios","raw_affiliation_strings":["Democritus University of Thrace"],"raw_orcid":"https://orcid.org/0000-0001-8240-484X","affiliations":[{"raw_affiliation_string":"Democritus University of Thrace","institution_ids":["https://openalex.org/I147962203"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/field-programmable-gate-array","display_name":"Field-programmable gate array","score":0.7635999917984009},{"id":"https://openalex.org/keywords/mycelium","display_name":"Mycelium","score":0.6922000050544739},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.5613999962806702},{"id":"https://openalex.org/keywords/initialization","display_name":"Initialization","score":0.499099999666214},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.40849998593330383}],"concepts":[{"id":"https://openalex.org/C42935608","wikidata":"https://www.wikidata.org/wiki/Q190411","display_name":"Field-programmable gate array","level":2,"score":0.7635999917984009},{"id":"https://openalex.org/C133479454","wikidata":"https://www.wikidata.org/wiki/Q326228","display_name":"Mycelium","level":2,"score":0.6922000050544739},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5651999711990356},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.5613999962806702},{"id":"https://openalex.org/C114466953","wikidata":"https://www.wikidata.org/wiki/Q6034165","display_name":"Initialization","level":2,"score":0.499099999666214},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.40849998593330383},{"id":"https://openalex.org/C182365436","wikidata":"https://www.wikidata.org/wiki/Q50701","display_name":"Variable (mathematics)","level":2,"score":0.3691999912261963},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.33000001311302185},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3086000084877014},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.28679999709129333},{"id":"https://openalex.org/C2781039887","wikidata":"https://www.wikidata.org/wiki/Q1391724","display_name":"Factor (programming language)","level":2,"score":0.2856999933719635},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.27730000019073486},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.26330000162124634}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:doi:10.5281/zenodo.18341704","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.5281/zenodo.18341705","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.18341705","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"pmh:doi:10.5281/zenodo.18341704","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4802022325","display_name":"Enlisting synthetic fungal-bacterial consortia to produce multi-cellular mycelium-based ELMs with computational capability","funder_award_id":"101071145","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"(Readme)":[0],"Zenodo":[1],"Dataset:":[2],"FPGA":[3,129,195,199,205,209,215,221],"Hardware":[4],"-":[5],"Mycelium":[6],"Growth":[7],"DatasetDataset":[8],"root":[9],"folder:":[10],"Zenodo/":[11],"1.":[12],"OverviewThis":[13],"dataset":[14,150,265,451,479,642],"contains":[15],"outcomes":[16],"of":[17,40,105,174,270,280,382,439,604,647,663,674],"mycelium":[18,60,72,125,143,160,458,493],"growth":[19,126,664,679],"patterns":[20,680],"produced":[21],"by":[22,164,350],"repeatedly":[23],"running":[24],"a":[25,30,37,97,102,158,165,255,337,387,399,436,449,491,605,631],"reaction\u2013diffusion":[26,106,229,658],"(RD)":[27],"model":[28],"on":[29,236],"two-dimensional":[31],"spatial":[32,75,238,278,678],"domain.":[33],"Each":[34,91,155,372,420,471,598],"run":[35,116,322,421,615],"evolves":[36,231],"coupled":[38,233],"set":[39,104,548,572],"fields":[41],"under":[42,650],"controlled":[43],"and":[44,48,69,89,101,139,177,292,354,433,460,464,495,518,541,554,578,595,612,616,639,666],"variable":[45],"environmental":[46,67,99,167,297,363,369,396,418,467,496,607,652,675],"conditions":[47,412,428,676],"stores":[49],"the":[50,114,128,132,140,237,261,267,271,277,281,346,379,383,481,602],"final":[51,133,268,619],"state":[52,234,269],"after":[53],"50,000":[54,624],"iterations.":[55],"Herein,":[56],"four":[57,66,70,84,141,148,482,486],"spatially":[58,137,338,400],"distinct":[59,71,103,159,326,417,457,492,657],"instances":[61,144],"are":[62,145,182,299,319,365],"produced,":[63],"corresponding":[64,380,489],"to":[65,153,323,356,378,416,476,490],"scenarios":[68],"types.":[73],"The":[74,179,264,361,627],"domain":[76],"is":[77,94,136,334,375,422,625,630,643],"partitioned":[78],"into":[79,147,367,485],"multiple":[80],"equal":[81],"subareas,":[82],"with":[83,96,245,341,424,514,537],"selected":[85],"subareas":[86,110,408,432,484],"actively":[87],"seeded":[88,92,109],"analyzed.":[90],"subarea":[93,381,546,570],"associated":[95,244],"specific":[98],"factor":[100,168,374],"parameters.":[107],"All":[108],"evolve":[111],"simultaneously":[112],"within":[113,285,345,358],"same":[115],"while":[117,413],"preserving":[118],"identical":[119,410,425],"initialization":[120,411],"conditions.":[121],"This":[122,403],"enables":[123],"parallel":[124,462],"in":[127,184,188,260,398,429],"hardware.":[130],"Afterwards,":[131],"biomass":[134,257,272,620],"field":[135,243,251,258,273,340,391,621],"partitioned,":[138],"subarea-specific":[142],"reorganized":[146,478],"independent":[149,316],"branches":[151],"(mycelium_1":[152,475],"mycelium_4).":[154],"branch":[156,599],"represents":[157,276],"type":[161,494],"driven":[162],"primarily":[163],"single":[166,388,606],"(temperature,":[169],"humidity,":[170],"or":[171,672],"light":[172,175],"consisting":[173],"wavelength":[176,555,579],"intensity).":[178],"final-state":[180],"images":[181],"stored":[183,628],"this":[185,443],"dataset,":[186],"exported":[187],"JPEG":[189,632],"format.":[190],"2.":[191],"Folder":[192,504,527,558,582],"StructureZenodo/":[193],"mycelium_1/":[194],"Sample":[196,200,206,210,216,222,507,530,561,585],"T<TemperatureValue>/":[197,201],"c_50000.jpeg":[198,202,208,212,218,224,635],"...":[203,213,219,225],"mycelium_2/":[204],"H<HumidityValue>/":[207,211],"mycelium_3/":[214],"L1_I<Intensity1Value>_W<Wavelength1Value>/":[217],"mycelium_4/":[220],"L2_I<Intensity2Value>_W<Wavelength2Value>/":[223],"3.":[226],"Model":[227],"VariablesThe":[228],"system":[230],"three":[232],"variables":[235],"grid:-":[239],"u(x,y,t):":[240],"an":[241,249],"activator":[242,516,539,590],"growth-driving":[246],"processes-":[247],"v(x,y,t):":[248],"suppressor":[250,593],"regulating":[252],"suppression-":[253],"c(x,y,t):":[254],"bistable":[256],"belonging":[259],"interval":[262],"[0,1]":[263],"visualizes":[266],"c,":[274],"which":[275],"morphology":[279,649],"developed":[282],"mycelial":[283,648],"network":[284],"each":[286,295,488,614,617],"subarea.":[287],"4.":[288],"Environmental":[289,501,524,550,574],"Parameter":[290],"Sampling":[291],"Subarea":[293],"AssignmentFor":[294],"run,":[296],"parameters":[298,364],"sampled":[300,343,362],"independently":[301],"from":[302,677],"predefined":[303],"continuous":[304],"ranges:-":[305],"Temperature:":[306],"10\u201335-":[307],"Humidity:":[308],"70\u2013100-":[309],"Light":[310,552,576],"intensity:":[311],"0\u2013100-":[312],"Wavelength:":[313],"350\u2013700":[314],"Two":[315],"intensity\u2013wavelength":[317],"pairs":[318],"generated":[320],"per":[321],"define":[324],"two":[325],"light-sensitive":[327],"subareas.":[328],"A":[329],"base":[330],"substrate":[331,384,390],"matrix":[332],"n":[333,392],"initialized":[335,423],"as":[336],"heterogeneous":[339],"randomly":[342],"values":[344],"unit":[347],"interval,":[348],"perturbed":[349],"additive":[351],"Gaussian":[352],"noise":[353],"clipped":[355],"remain":[357],"these":[359],"bounds.":[360],"transformed":[366],"nonlinear":[368],"scaling":[370,373],"factors.":[371],"applied":[376],"multiplicatively":[377],"matrix,":[385],"yielding":[386],"aggregated":[389],"that":[393,406,452],"encodes":[394],"all":[395,407,430],"influences":[397],"resolved":[401],"manner.":[402],"approach":[404],"ensures":[405],"share":[409],"being":[414],"subject":[415],"modulation.":[419],"localized":[426],"seed":[427],"active":[431,483],"evolved":[434],"for":[435],"fixed":[437],"number":[438],"time":[440],"steps.":[441],"Repeating":[442],"procedure":[444],"across":[445,656],"many":[446],"runs":[447],"produces":[448],"structured":[450],"combines":[453],"systematic":[454],"single-factor":[455],"isolation,":[456],"types":[459],"their":[461],"growth,":[463],"randomized":[465],"multi-factor":[466],"variability.":[468],"5.":[469],"What":[470],"Dataset":[472,637],"Branch":[473],"Represents":[474],"mycelium_4)The":[477],"separates":[480],"branches,":[487],"driver.":[497],"mycelium_1":[498],"(Temperature-sensitive":[499],"subarea):-":[500,523],"driver:":[502,525,551,575],"Temperature-":[503],"naming:":[505,528,559,583],"\"FPGA":[506,529,560,584],"T<T>\"-":[508],"Reaction\u2013diffusion":[509,532,563,587],"parameters:":[510,533,564,588],"Subarea-specific":[511,534],"parameter":[512,535,566,659],"map":[513,536],"reduced":[515,538,592,596],"rate":[517,540],"near-nominal":[519],"diffusion":[520,543,597],"mycelium_2":[521],"(Humidity-sensitive":[522],"Humidity-":[526],"H<H>\"-":[531],"increased":[542],"mycelium_3":[544],"(Light-sensitive":[545,569],"\u2013":[547,571],"1):-":[549],"intensity":[553,577],"(I1,":[556],"W1)-":[557],"L1_I<I1>_W<W1>\"-":[562],"Nominal":[565],"configuration":[567],"mycelium_4":[568],"2):-":[573],"(I2,":[580],"W2)-":[581],"L2_I<I2>_W<W2>\"-":[586],"Elevated":[589],"rate,":[591,594],"therefore":[600],"isolates":[601],"effect":[603],"factor.":[608],"6.":[609],"Output":[610],"Data":[611],"VisualizationFor":[613],"subarea:-The":[618],"at":[622],"iteration":[623],"retained.-":[626],"artifact":[629],"image":[633],"named:":[634],"7.":[636],"Scope":[638],"Intended":[640],"UseThis":[641],"suitable":[644],"for:-":[645],"Analysis":[646],"isolated":[651],"drivers-":[653],"Comparative":[654],"studies":[655],"regimes-":[660],"Statistical":[661],"characterization":[662],"density":[665],"heterogeneity-":[667],"Machine-learning":[668],"tasks":[669],"involving":[670],"classification":[671],"regression":[673]},"counts_by_year":[],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2026-01-27T00:00:00"}
