{"id":"https://openalex.org/W7123912458","doi":"https://doi.org/10.5281/zenodo.18228011","title":"Ortho-groups of Transposable Elements in 558 Genomes across 352 Plant Species","display_name":"Ortho-groups of Transposable Elements in 558 Genomes across 352 Plant Species","publication_year":2026,"publication_date":"2026-01-13","ids":{"openalex":"https://openalex.org/W7123912458","doi":"https://doi.org/10.5281/zenodo.18228011"},"language":null,"primary_location":{"id":"doi:10.5281/zenodo.18228011","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.18228011","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.18228011","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5122939731","display_name":"Yan Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I176790772","display_name":"Murdoch University","ror":"https://ror.org/00r4sry34","country_code":"AU","type":"education","lineage":["https://openalex.org/I176790772"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Huang, Yan","raw_affiliation_strings":["Murdoch University"],"raw_orcid":"https://orcid.org/0009-0000-7882-0082","affiliations":[{"raw_affiliation_string":"Murdoch University","institution_ids":["https://openalex.org/I176790772"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5122939731"],"corresponding_institution_ids":["https://openalex.org/I176790772"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.8022000193595886},{"id":"https://openalex.org/keywords/transposable-element","display_name":"Transposable element","score":0.6281999945640564},{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.44940000772476196},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.42570000886917114},{"id":"https://openalex.org/keywords/sequence-homology","display_name":"Sequence homology","score":0.3944000005722046},{"id":"https://openalex.org/keywords/plant-species","display_name":"Plant species","score":0.3921999931335449},{"id":"https://openalex.org/keywords/dna-transposable-elements","display_name":"DNA Transposable Elements","score":0.36739999055862427}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.8022000193595886},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7099999785423279},{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.6281999945640564},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4794999957084656},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.44940000772476196},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.42570000886917114},{"id":"https://openalex.org/C2779315201","wikidata":"https://www.wikidata.org/wiki/Q414601","display_name":"Sequence homology","level":4,"score":0.3944000005722046},{"id":"https://openalex.org/C2985179745","wikidata":"https://www.wikidata.org/wiki/Q131449","display_name":"Plant species","level":2,"score":0.3921999931335449},{"id":"https://openalex.org/C2910146623","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"DNA Transposable Elements","level":5,"score":0.36739999055862427},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3375999927520752},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.32589998841285706},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.3091000020503998},{"id":"https://openalex.org/C142133378","wikidata":"https://www.wikidata.org/wiki/Q7201518","display_name":"Plant genetics","level":4,"score":0.3043000102043152},{"id":"https://openalex.org/C70343354","wikidata":"https://www.wikidata.org/wiki/Q3381973","display_name":"Phylogenomics","level":5,"score":0.2985999882221222},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.2782999873161316},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.2687000036239624},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.2533999979496002}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.18228011","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.18228011","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.18228011","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.18228011","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"We":[0,22],"perform":[1],"a":[2],"phylogenomic":[3],"analysis":[4],"across":[5],"558":[6],"high-quality":[7],"plant":[8],"genomes":[9],"spanning":[10],"352":[11],"species,":[12],"221":[13],"genera":[14],"and":[15,24],"five":[16],"phyla,":[17],"from":[18],"algae":[19],"to":[20,32],"angiosperms.":[21],"identify":[23],"annotate":[25],"180,274":[26],"TE":[27,39],"families":[28],"by":[29],"using":[30],"OrthoFinder":[31],"conduct":[33],"homology":[34],"analyses":[35],"on":[36],"all":[37],"the":[38],"consensus":[40],"sequences.":[41]},"counts_by_year":[],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2026-01-14T00:00:00"}
