{"id":"https://openalex.org/W7117406670","doi":"https://doi.org/10.5281/zenodo.18067210","title":"Supplementary Data for \"Deep learning reveals ecological decoupling and rate heterogeneity in Hymenoptera wing evolution\"","display_name":"Supplementary Data for \"Deep learning reveals ecological decoupling and rate heterogeneity in Hymenoptera wing evolution\"","publication_year":2025,"publication_date":"2025-12-27","ids":{"openalex":"https://openalex.org/W7117406670","doi":"https://doi.org/10.5281/zenodo.18067210"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.18067210","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.18067210","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"type":"supplementary-materials","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.18067210","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026279470","display_name":"Ancheng Peng","orcid":"https://orcid.org/0000-0002-3813-1802"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I159885104","display_name":"\u00c9cole Pratique des Hautes \u00c9tudes","ror":"https://ror.org/046b3cj80","country_code":"FR","type":"education","lineage":["https://openalex.org/I159885104","https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I4210103322","display_name":"Institut de Syst\u00e9matique, \u00c9volution, Biodiversit\u00e9","ror":"https://ror.org/01dadvw90","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I159885104","https://openalex.org/I2746051580","https://openalex.org/I39804081","https://openalex.org/I4210103322","https://openalex.org/I4210107625","https://openalex.org/I4210123595","https://openalex.org/I52585520"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Peng, Ancheng","raw_affiliation_strings":["Institut de Syst\u00e9matique, \u00c9volution, Biodiversit\u00e9 (UMR 7205), Mus\u00e9um national d'Histoire naturelle, CNRS, SU, EPHE-PSL, UA, Paris F-75005, France"],"raw_orcid":"https://orcid.org/0000-0002-3813-1802","affiliations":[{"raw_affiliation_string":"Institut de Syst\u00e9matique, \u00c9volution, Biodiversit\u00e9 (UMR 7205), Mus\u00e9um national d'Histoire naturelle, CNRS, SU, EPHE-PSL, UA, Paris F-75005, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I159885104","https://openalex.org/I4210103322"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071768918","display_name":"Shihan Guan","orcid":"https://orcid.org/0000-0003-3563-5308"},"institutions":[{"id":"https://openalex.org/I4210090971","display_name":"Southeast University","ror":"https://ror.org/00cf0ab87","country_code":"BD","type":"education","lineage":["https://openalex.org/I4210090971"]},{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["BD","CN"],"is_corresponding":false,"raw_author_name":"Guan, Shihan","raw_affiliation_strings":["Southeast University, the Laboratory of Image Science and Technology (LIST), School of Computer Science and Engineering, Nanjing 210096, China"],"raw_orcid":"https://orcid.org/0000-0003-3563-5308","affiliations":[{"raw_affiliation_string":"Southeast University, the Laboratory of Image Science and Technology (LIST), School of Computer Science and Engineering, Nanjing 210096, China","institution_ids":["https://openalex.org/I4210090971","https://openalex.org/I76569877"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015307055","display_name":"Laurent Albera","orcid":"https://orcid.org/0000-0002-2109-5649"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["CN","FR"],"is_corresponding":false,"raw_author_name":"Albera, Laurent","raw_affiliation_strings":["Centre de Recherche en Information Biom\u00e9dicale Sino-fran\u00e7ais (CRIBs), Inserm, Southeast University, F-35000 Rennes, France, Nanjing 210096, China"],"raw_orcid":"https://orcid.org/0000-0002-2109-5649","affiliations":[{"raw_affiliation_string":"Centre de Recherche en Information Biom\u00e9dicale Sino-fran\u00e7ais (CRIBs), Inserm, Southeast University, F-35000 Rennes, France, Nanjing 210096, China","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I76569877"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061343855","display_name":"R\u00e9gine Le Bouquin Jeann\u00e8s","orcid":"https://orcid.org/0000-0002-4050-2895"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["CN","FR"],"is_corresponding":false,"raw_author_name":"Le Bouquin Jeannes, Regine","raw_affiliation_strings":["Centre de Recherche en Information Biom\u00e9dicale Sino-fran\u00e7ais (CRIBs), Inserm, Southeast University, F-35000 Rennes, France, Nanjing 210096, China"],"raw_orcid":"https://orcid.org/0000-0002-4050-2895","affiliations":[{"raw_affiliation_string":"Centre de Recherche en Information Biom\u00e9dicale Sino-fran\u00e7ais (CRIBs), Inserm, Southeast University, F-35000 Rennes, France, Nanjing 210096, China","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I76569877"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056031751","display_name":"Huazhong Shu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210090971","display_name":"Southeast University","ror":"https://ror.org/00cf0ab87","country_code":"BD","type":"education","lineage":["https://openalex.org/I4210090971"]},{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["BD","CN"],"is_corresponding":false,"raw_author_name":"Shu, Huazhong","raw_affiliation_strings":["Southeast University, the Laboratory of Image Science and Technology (LIST), School of Computer Science and Engineering, Nanjing 210096, China"],"raw_orcid":"https://orcid.org/0000-0002-3833-7915","affiliations":[{"raw_affiliation_string":"Southeast University, the Laboratory of Image Science and Technology (LIST), School of Computer Science and Engineering, Nanjing 210096, China","institution_ids":["https://openalex.org/I4210090971","https://openalex.org/I76569877"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092702791","display_name":"Mathieu Boderau","orcid":"https://orcid.org/0000-0001-7088-9560"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I159885104","display_name":"\u00c9cole Pratique des Hautes \u00c9tudes","ror":"https://ror.org/046b3cj80","country_code":"FR","type":"education","lineage":["https://openalex.org/I159885104","https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I4210103322","display_name":"Institut de Syst\u00e9matique, \u00c9volution, Biodiversit\u00e9","ror":"https://ror.org/01dadvw90","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I159885104","https://openalex.org/I2746051580","https://openalex.org/I39804081","https://openalex.org/I4210103322","https://openalex.org/I4210107625","https://openalex.org/I4210123595","https://openalex.org/I52585520"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Boderau, Mathieu","raw_affiliation_strings":["Institut de Syst\u00e9matique, \u00c9volution, Biodiversit\u00e9 (UMR 7205), Mus\u00e9um national d'Histoire naturelle, CNRS, SU, EPHE-PSL, UA, Paris F-75005, France"],"raw_orcid":"https://orcid.org/0000-0001-7088-9560","affiliations":[{"raw_affiliation_string":"Institut de Syst\u00e9matique, \u00c9volution, Biodiversit\u00e9 (UMR 7205), Mus\u00e9um national d'Histoire naturelle, CNRS, SU, EPHE-PSL, UA, Paris F-75005, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I159885104","https://openalex.org/I4210103322"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5121421569","display_name":"Andre Nel","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I159885104","display_name":"\u00c9cole Pratique des Hautes \u00c9tudes","ror":"https://ror.org/046b3cj80","country_code":"FR","type":"education","lineage":["https://openalex.org/I159885104","https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I4210103322","display_name":"Institut de Syst\u00e9matique, \u00c9volution, Biodiversit\u00e9","ror":"https://ror.org/01dadvw90","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I159885104","https://openalex.org/I2746051580","https://openalex.org/I39804081","https://openalex.org/I4210103322","https://openalex.org/I4210107625","https://openalex.org/I4210123595","https://openalex.org/I52585520"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Nel, Andre","raw_affiliation_strings":["Institut de Syst\u00e9matique, \u00c9volution, Biodiversit\u00e9 (UMR 7205), Mus\u00e9um national d'Histoire naturelle, CNRS, SU, EPHE-PSL, UA, Paris F-75005, France"],"raw_orcid":"https://orcid.org/0000-0002-4241-7651","affiliations":[{"raw_affiliation_string":"Institut de Syst\u00e9matique, \u00c9volution, Biodiversit\u00e9 (UMR 7205), Mus\u00e9um national d'Histoire naturelle, CNRS, SU, EPHE-PSL, UA, Paris F-75005, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I159885104","https://openalex.org/I4210103322"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5121429562","display_name":"Bo Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210103797","display_name":"Nanjing Institute of Geology and Paleontology","ror":"https://ror.org/019av8481","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210103797"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wang, Bo","raw_affiliation_strings":["State Key Laboratory of Palaeobiology and Stratigraphy, Nanjing Institute of Geology and Palaeontology, Chinese Academy of Sciences, Nanjing 210008, China"],"raw_orcid":"https://orcid.org/0000-0002-8001-9937","affiliations":[{"raw_affiliation_string":"State Key Laboratory of Palaeobiology and Stratigraphy, Nanjing Institute of Geology and Palaeontology, Chinese Academy of Sciences, Nanjing 210008, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210103797"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058657336","display_name":"Corentin Jouault","orcid":"https://orcid.org/0000-0002-3680-5172"},"institutions":[{"id":"https://openalex.org/I4210123856","display_name":"Museum of the History of Science","ror":"https://ror.org/036515p55","country_code":"GB","type":"archive","lineage":["https://openalex.org/I4210123856"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jouault, Corentin","raw_affiliation_strings":["Oxford University Museum of Natural History, University of Oxford, Parks Road, Oxford OX1 3PW, United-Kingdom"],"raw_orcid":"https://orcid.org/0000-0002-3680-5172","affiliations":[{"raw_affiliation_string":"Oxford University Museum of Natural History, University of Oxford, Parks Road, Oxford OX1 3PW, United-Kingdom","institution_ids":["https://openalex.org/I4210123856"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113489709","display_name":"Frederic Legendre","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I159885104","display_name":"\u00c9cole Pratique des Hautes \u00c9tudes","ror":"https://ror.org/046b3cj80","country_code":"FR","type":"education","lineage":["https://openalex.org/I159885104","https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I4210103322","display_name":"Institut de Syst\u00e9matique, \u00c9volution, Biodiversit\u00e9","ror":"https://ror.org/01dadvw90","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I159885104","https://openalex.org/I2746051580","https://openalex.org/I39804081","https://openalex.org/I4210103322","https://openalex.org/I4210107625","https://openalex.org/I4210123595","https://openalex.org/I52585520"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Legendre, Frederic","raw_affiliation_strings":["Institut de Syst\u00e9matique, \u00c9volution, Biodiversit\u00e9 (UMR 7205), Mus\u00e9um national d'Histoire naturelle, CNRS, SU, EPHE-PSL, UA, Paris F-75005, France"],"raw_orcid":"https://orcid.org/0000-0001-5900-8048","affiliations":[{"raw_affiliation_string":"Institut de Syst\u00e9matique, \u00c9volution, Biodiversit\u00e9 (UMR 7205), Mus\u00e9um national d'Histoire naturelle, CNRS, SU, EPHE-PSL, UA, Paris F-75005, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I159885104","https://openalex.org/I4210103322"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":9,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.586899995803833},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.5462999939918518},{"id":"https://openalex.org/keywords/hymenoptera","display_name":"Hymenoptera","score":0.5437999963760376},{"id":"https://openalex.org/keywords/decoupling","display_name":"Decoupling (probability)","score":0.47870001196861267},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.4327000081539154},{"id":"https://openalex.org/keywords/matrix","display_name":"Matrix (chemical analysis)","score":0.37279999256134033}],"concepts":[{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.586899995803833},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.5462999939918518},{"id":"https://openalex.org/C2780653484","wikidata":"https://www.wikidata.org/wiki/Q22651","display_name":"Hymenoptera","level":2,"score":0.5437999963760376},{"id":"https://openalex.org/C205606062","wikidata":"https://www.wikidata.org/wiki/Q5249645","display_name":"Decoupling (probability)","level":2,"score":0.47870001196861267},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.4327000081539154},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4262999892234802},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.414900004863739},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.392300009727478},{"id":"https://openalex.org/C106487976","wikidata":"https://www.wikidata.org/wiki/Q685816","display_name":"Matrix (chemical analysis)","level":2,"score":0.37279999256134033},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34279999136924744},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.33809998631477356},{"id":"https://openalex.org/C5349765","wikidata":"https://www.wikidata.org/wiki/Q5282866","display_name":"Distance matrices in phylogeny","level":2,"score":0.33550000190734863},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.33239999413490295},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.2700999975204468},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.26829999685287476},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.26100000739097595}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.18067210","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.18067210","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.18067210","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.18067210","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"This":[0],"repository":[1],"contains":[2],"the":[3,13,47,73,97,121,150,173,177,297,314,335,359,384,422,436,441,445,478,486,502],"complete":[4],"raw":[5,74],"data,":[6,257],"computational":[7],"matrices,":[8],"and":[9,20,112,127,130,141,207,293,321,330,349,370,382,403,409,460,467,474],"codes":[10],"utilized":[11,45],"in":[12,23,68,116,254],"study":[14,118],"\"Deep":[15],"learning":[16,361],"reveals":[17],"ecological":[18],"decoupling":[19],"rate":[21],"heterogeneity":[22],"Hymenoptera":[24,115,146],"wing":[25,407,452,455],"evolution\".":[26],"The":[27,40,50,137,289],"files":[28,82,301],"are":[29,90,215,302],"organized":[30,53],"as":[31,103,343,465],"follows:":[32],"S1:":[33],"Raw":[34,64,185,261],"image":[35,43,339],"dataset":[36,51,193,350],"of":[37,96,176,188,249,264,274,313,485],"insect":[38],"forewings.":[39],"complete,":[41],"unprocessed":[42],"collection":[44],"throughout":[46],"analytical":[48,131],"framework.":[49],"is":[52],"into":[54,304],"folders,":[55],"with":[56,149,169,283],"filenames":[57],"corresponding":[58],"to":[59,86,92,101,167,172,333,379,450,489,500,505],"their":[60],"taxonomic":[61],"classification.":[62],"S2:":[63],"model-extracted":[65,186,262],"matrices":[66,76,123],"used":[67],"Case":[69,78,117,134],"Studies":[70,79],"1\u20133.":[71,80],"Contains":[72,269],"output":[75],"for":[77,106,114,133,144,271,296,324,405],"These":[81],"include":[83],"grouping":[84],"metadata":[85],"facilitate":[87],"visualization.":[88],"They":[89],"provided":[91],"allow":[93],"direct":[94],"reproduction":[95],"study's":[98],"results":[99,113,132],"or":[100],"serve":[102],"a":[104,305],"basis":[105],"future":[107],"analyses.":[108],"S3:":[109],"Phylogenetic":[110],"matrix":[111,140,187,263],"2.":[119,136],"Comprises":[120],"phylogenetic":[122],"(encompassing":[124],"discrete,":[125],"continuous,":[126],"combined":[128],"datasets)":[129],"Study":[135],"discrete":[138],"feature":[139],"topological":[142],"constraints":[143],"all":[145,327],"species":[147],"align":[148],"protocols":[151],"established":[152],"by":[153],"Ronquist":[154],"et":[155,161,218],"al.":[156,162,219],"(2012).":[157,163],"Reference:":[158,221],"Ronquist,":[159],"F.":[160],"A":[164,192,246],"Total-Evidence":[165],"Approach":[166],"Dating":[168],"Fossils,":[170],"Applied":[171],"Early":[174],"Radiation":[175],"Hymenoptera.":[178],"Systematic":[179],"Biology,":[180],"61(6),":[181],"973\u2013999.":[182],"https://doi.org/10.1093/sysbio/sys058":[183],"S4:":[184],"Primate":[189,244],"3D":[190,211,250,267,490,497],"dataset.":[191,268],"comprising":[194],"331":[195],"data":[196,214,270],"entries":[197],"across":[198],"six":[199],"skeletal":[200],"classes":[201,273],"(Cuneiform,":[202],"Mandible,":[203],"Patella,":[204],"Scapula,":[205],"Vertebra,":[206],"Femur)":[208],"derived":[209],"from":[210,216,366,457,477],"models.":[212],"Volume":[213],"Alm\u00e9cija":[217],"(2024).":[220,243],"Alm\u00e9cija,":[222],"S.,":[223,237],"Pugh,":[224],"K.":[225],"D.,":[226],"Anaya,":[227],"A.,":[228],"Smith,":[229],"C.":[230],"M.,":[231],"Simmons,":[232],"N.":[233],"B.,":[234],"Voss,":[235],"R.":[236],"...":[238],"&":[239],"Catalano,":[240],"S.":[241],"A.":[242],"Phenotypes:":[245],"Multi-Institution":[247],"Collection":[248],"Morphological":[251],"Data":[252],"Housed":[253],"MorphoSource.":[255],"Scientific":[256],"11(1),":[258],"1391.":[259],"S5:":[260],"standard":[265,275],"geometric":[266],"five":[272],"volumetric":[276],"structures":[277,285],"(Sphere,":[278],"Cube,":[279],"Ellipsoid,":[280],"Cylinder,":[281],"Torus),":[282],"200":[284],"per":[286],"class.":[287],"S6:":[288],"code,":[290],"sample":[291,388,426],"files,":[292],"user":[294,375],"guide":[295],"HAIKA":[298,315,336,385,487,503],"model.":[299],"All":[300],"packaged":[303],"single":[306],"compressed":[307],"file,":[308],"containing:1.":[309],"README.mdProvides":[310],"an":[311],"overview":[312],"project,":[316],"including":[317,393,417,431],"its":[318],"purpose,":[319],"methodology,":[320],"basic":[322],"instructions":[323],"use.2.":[325],"requirements.txtLists":[326],"Python":[328],"libraries":[329],"dependencies":[331],"required":[332],"run":[334],"pipeline.3.":[337],"preprocessing.pyHandles":[338],"preprocessing":[340],"tasks":[341],"such":[342,464],"resizing,":[344],"format":[345],"conversion,":[346],"file":[347],"organization,":[348],"statistics":[351],"generation.4.":[352],"main.pyThe":[353],"main":[354,494],"execution":[355],"script.":[356],"It":[357],"trains":[358],"deep":[360],"autoencoder,":[362],"extracts":[363],"latent":[364],"features":[365],"images,":[367],"performs":[368],"clustering,":[369],"generates":[371],"visualizations.5.":[372],"user_guide.docxA":[373],"detailed":[374],"manual":[376],"explaining":[377],"how":[378],"install,":[380],"configure,":[381],"operate":[383],"pipeline.6.":[386],"heatmap/":[387],"imagesStores":[389,427],"100":[390],"visualization":[391,415,429],"outputs,":[392,416,430],"heatmaps":[394],"that":[395,420,434],"show":[396,421,435],"neural":[397],"network":[398],"attention":[399],"regions.7.":[400],"segmentation/Includes":[401],"scripts":[402,482,495],"outputs":[404],"automatic":[406],"segmentation":[408,423,442,458],"morphological":[410,462],"measurement":[411],"extraction.8.":[412],"segmentation/segmentation_res/Stores":[413],"30":[414,428],"segmentatioin":[418],"mask":[419],"results.9.":[424],"segmentation/outline_res/":[425],"outline":[432,437],"images":[433],"extraction":[438],"results.10.":[439],"segmentation/seg_main.pyRuns":[440],"pipeline":[443],"using":[444],"Segment":[446],"Anything":[447],"Model":[448],"(SAM)":[449],"isolate":[451],"regions.11.":[453],"segmentation/outline_extract_and_calculate.pyExtracts":[454],"outlines":[456],"masks":[459],"calculates":[461],"metrics":[463],"area":[466],"aspect":[468],"ratio.12.":[469],"checkpoints/Stores":[470],"saved":[471],"model":[472],"weights":[473],"training":[475],"checkpoints":[476],"autoencoder.13.":[479],"3d_expansion/Contains":[480],"experimental":[481],"demonstrating":[483],"extension":[484],"framework":[488,504],"shape":[491,507],"data.14.":[492],"3d_expansion/main.pyThe":[493],"apply":[496],"convolutional":[498],"filters":[499],"extend":[501],"three-dimensional":[506],"data.":[508]},"counts_by_year":[],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-12-28T00:00:00"}
