{"id":"https://openalex.org/W7093369984","doi":"https://doi.org/10.5281/zenodo.17411828","title":"alchemlyb: the simple alchemistry library","display_name":"alchemlyb: the simple alchemistry library","publication_year":2025,"publication_date":"2025-10-22","ids":{"openalex":"https://openalex.org/W7093369984","doi":"https://doi.org/10.5281/zenodo.17411828"},"language":null,"primary_location":{"id":"doi:10.5281/zenodo.17411828","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17411828","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"type":"other","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.17411828","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Dotson, David L.","orcid":"https://orcid.org/0000-0001-5879-2942"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Dotson, David L.","raw_affiliation_strings":["Datryllic LLC"],"raw_orcid":"https://orcid.org/0000-0001-5879-2942","affiliations":[{"raw_affiliation_string":"Datryllic LLC","institution_ids":[]}]},{"author_position":"middle","author":{"id":null,"display_name":"Kenney, Ian M.","orcid":"https://orcid.org/0000-0002-9749-8866"},"institutions":[{"id":"https://openalex.org/I4210126810","display_name":"Scientific Consulting Group","ror":"https://ror.org/035fp5e48","country_code":"US","type":"other","lineage":["https://openalex.org/I4210126810"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kenney, Ian M.","raw_affiliation_strings":["Kenney Consulting, LLC"],"raw_orcid":"https://orcid.org/0000-0002-9749-8866","affiliations":[{"raw_affiliation_string":"Kenney Consulting, LLC","institution_ids":["https://openalex.org/I4210126810"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Beckstein, Oliver","orcid":"https://orcid.org/0000-0003-1340-0831"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Beckstein, Oliver","raw_affiliation_strings":["Arizona State University"],"raw_orcid":"https://orcid.org/0000-0003-1340-0831","affiliations":[{"raw_affiliation_string":"Arizona State University","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Liu, Shuai","orcid":"https://orcid.org/0000-0002-8632-633X"},"institutions":[{"id":"https://openalex.org/I4210094840","display_name":"Silicon Therapeutics (United States)","ror":"https://ror.org/00rbf3t83","country_code":"US","type":"company","lineage":["https://openalex.org/I4210094840"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liu, Shuai","raw_affiliation_strings":["Silicon Therapeutics LLC"],"raw_orcid":"https://orcid.org/0000-0002-8632-633X","affiliations":[{"raw_affiliation_string":"Silicon Therapeutics LLC","institution_ids":["https://openalex.org/I4210094840"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jensen, Travis","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jensen, Travis","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Allen, Bryce","orcid":"https://orcid.org/0000-0002-0804-8127"},"institutions":[{"id":"https://openalex.org/I4210160844","display_name":"Individual Differences","ror":"https://ror.org/05patbw61","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210160844"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Allen, Bryce","raw_affiliation_strings":["Differentiated Therapeutics"],"raw_orcid":"https://orcid.org/0000-0002-0804-8127","affiliations":[{"raw_affiliation_string":"Differentiated Therapeutics","institution_ids":["https://openalex.org/I4210160844"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Wille, Dominik","orcid":null},"institutions":[{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Wille, Dominik","raw_affiliation_strings":["Freie Universit\u00e4t Berlin"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Freie Universit\u00e4t Berlin","institution_ids":["https://openalex.org/I75951250"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Lim, Victoria","orcid":"https://orcid.org/0000-0003-4030-9312"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lim, Victoria","raw_affiliation_strings":["University of California Irvine"],"raw_orcid":"https://orcid.org/0000-0003-4030-9312","affiliations":[{"raw_affiliation_string":"University of California Irvine","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Lee, Hyungro","orcid":"https://orcid.org/0000-0002-4221-7094"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lee, Hyungro","raw_affiliation_strings":["Pacific Northwest National Laboratory"],"raw_orcid":"https://orcid.org/0000-0002-4221-7094","affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Barhaghi, Mohammad Soroush","orcid":"https://orcid.org/0000-0001-8226-7347"},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Barhaghi, Mohammad Soroush","raw_affiliation_strings":["Wayne State University"],"raw_orcid":"https://orcid.org/0000-0001-8226-7347","affiliations":[{"raw_affiliation_string":"Wayne State University","institution_ids":["https://openalex.org/I185443292"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Wu, Zhiyi","orcid":"https://orcid.org/0000-0002-7615-7851"},"institutions":[{"id":"https://openalex.org/I4210095306","display_name":"Exscien (United States)","ror":"https://ror.org/00vxnww48","country_code":"US","type":"company","lineage":["https://openalex.org/I4210095306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wu, Zhiyi","raw_affiliation_strings":["Exscientia plc"],"raw_orcid":"https://orcid.org/0000-0002-7615-7851","affiliations":[{"raw_affiliation_string":"Exscientia plc","institution_ids":["https://openalex.org/I4210095306"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Hsu, Wei-Tse","orcid":"https://orcid.org/0000-0001-6167-5480"},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]},{"id":"https://openalex.org/I2802236040","display_name":"University of Colorado System","ror":"https://ror.org/00jc20583","country_code":"US","type":"education","lineage":["https://openalex.org/I2802236040"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hsu, Wei-Tse","raw_affiliation_strings":["University of Colorado Boulder"],"raw_orcid":"https://orcid.org/0000-0001-6167-5480","affiliations":[{"raw_affiliation_string":"University of Colorado Boulder","institution_ids":["https://openalex.org/I2802236040","https://openalex.org/I188538660"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Schlaich, Alexander","orcid":"https://orcid.org/0000-0002-4250-363X"},"institutions":[{"id":"https://openalex.org/I100066346","display_name":"University of Stuttgart","ror":"https://ror.org/04vnq7t77","country_code":"DE","type":"education","lineage":["https://openalex.org/I100066346"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Schlaich, Alexander","raw_affiliation_strings":["University of Stuttgart"],"raw_orcid":"https://orcid.org/0000-0002-4250-363X","affiliations":[{"raw_affiliation_string":"University of Stuttgart","institution_ids":["https://openalex.org/I100066346"]}]},{"author_position":"middle","author":{"id":null,"display_name":"H\u00e9nin, J\u00e9r\u00f4me","orcid":"https://orcid.org/0000-0003-2540-4098"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"H\u00e9nin, J\u00e9r\u00f4me","raw_affiliation_strings":["CNRS"],"raw_orcid":"https://orcid.org/0000-0003-2540-4098","affiliations":[{"raw_affiliation_string":"CNRS","institution_ids":[]}]},{"author_position":"middle","author":{"id":null,"display_name":"Joseph, Thomas T.","orcid":"https://orcid.org/0000-0003-1323-3244"},"institutions":[{"id":"https://openalex.org/I36788626","display_name":"California University of Pennsylvania","ror":"https://ror.org/01spssf70","country_code":"US","type":"education","lineage":["https://openalex.org/I36788626"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph, Thomas T.","raw_affiliation_strings":["University of Pennsylvania"],"raw_orcid":"https://orcid.org/0000-0003-1323-3244","affiliations":[{"raw_affiliation_string":"University of Pennsylvania","institution_ids":["https://openalex.org/I36788626"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Alibay, Irfan","orcid":"https://orcid.org/0000-0001-5787-9130"},"institutions":[{"id":"https://openalex.org/I4400573198","display_name":"Open Molecular Software Foundation","ror":"https://ror.org/02en65a92","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I4400573198"]}],"countries":[],"is_corresponding":false,"raw_author_name":"Alibay, Irfan","raw_affiliation_strings":["Open Molecular Software Foundation"],"raw_orcid":"https://orcid.org/0000-0001-5787-9130","affiliations":[{"raw_affiliation_string":"Open Molecular Software Foundation","institution_ids":["https://openalex.org/I4400573198"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Merz, Pascal T.","orcid":"https://orcid.org/0000-0002-7045-8725"},"institutions":[{"id":"https://openalex.org/I4210126810","display_name":"Scientific Consulting Group","ror":"https://ror.org/035fp5e48","country_code":"US","type":"other","lineage":["https://openalex.org/I4210126810"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Merz, Pascal T.","raw_affiliation_strings":["PM Scientific Consulting"],"raw_orcid":"https://orcid.org/0000-0002-7045-8725","affiliations":[{"raw_affiliation_string":"PM Scientific Consulting","institution_ids":["https://openalex.org/I4210126810"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Marson, Domenico","orcid":"https://orcid.org/0000-0003-1839-9868"},"institutions":[{"id":"https://openalex.org/I142444530","display_name":"University of Trieste","ror":"https://ror.org/02n742c10","country_code":"IT","type":"education","lineage":["https://openalex.org/I142444530"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marson, Domenico","raw_affiliation_strings":["University of Trieste"],"raw_orcid":"https://orcid.org/0000-0003-1839-9868","affiliations":[{"raw_affiliation_string":"University of Trieste","institution_ids":["https://openalex.org/I142444530"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Fan, Shujie","orcid":"https://orcid.org/0000-0002-0271-2760"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fan, Shujie","raw_affiliation_strings":["Arizona State University"],"raw_orcid":"https://orcid.org/0000-0002-0271-2760","affiliations":[{"raw_affiliation_string":"Arizona State University","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Janssen, Jan","orcid":"https://orcid.org/0000-0001-9948-7119"},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Janssen, Jan","raw_affiliation_strings":["Max-Planck-Institut for Sustainable Materials"],"raw_orcid":"https://orcid.org/0000-0001-9948-7119","affiliations":[{"raw_affiliation_string":"Max-Planck-Institut for Sustainable Materials","institution_ids":["https://openalex.org/I149899117"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Li, Haoxi","orcid":"https://orcid.org/0009-0004-8369-1042"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Li, Haoxi","raw_affiliation_strings":["University of North Carolina"],"raw_orcid":"https://orcid.org/0009-0004-8369-1042","affiliations":[{"raw_affiliation_string":"University of North Carolina","institution_ids":[]}]},{"author_position":"middle","author":{"id":null,"display_name":"Carter, Helmut","orcid":"https://orcid.org/0000-0003-0273-4107"},"institutions":[{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carter, Helmut","raw_affiliation_strings":["City University of New York"],"raw_orcid":"https://orcid.org/0000-0003-0273-4107","affiliations":[{"raw_affiliation_string":"City University of New York","institution_ids":["https://openalex.org/I174216632"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Mobley, David","orcid":"https://orcid.org/0000-0002-1083-5533"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mobley, David","raw_affiliation_strings":["University of California Irvine"],"raw_orcid":"https://orcid.org/0000-0002-1083-5533","affiliations":[{"raw_affiliation_string":"University of California Irvine","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Shirts, Michael R.","orcid":"https://orcid.org/0000-0003-3249-1097"},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]},{"id":"https://openalex.org/I2802236040","display_name":"University of Colorado System","ror":"https://ror.org/00jc20583","country_code":"US","type":"education","lineage":["https://openalex.org/I2802236040"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shirts, Michael R.","raw_affiliation_strings":["University of Colorado Boulder"],"raw_orcid":"https://orcid.org/0000-0003-3249-1097","affiliations":[{"raw_affiliation_string":"University of Colorado Boulder","institution_ids":["https://openalex.org/I2802236040","https://openalex.org/I188538660"]}]},{"author_position":"last","author":{"id":null,"display_name":"Clark, Jennifer A.","orcid":"https://orcid.org/0000-0003-4897-5651"},"institutions":[{"id":"https://openalex.org/I1321296531","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416","country_code":"US","type":"funder","lineage":["https://openalex.org/I1321296531","https://openalex.org/I1343035065"]},{"id":"https://openalex.org/I4210124755","display_name":"National Institute of Standards","ror":"https://ror.org/02zftm050","country_code":"EG","type":"facility","lineage":["https://openalex.org/I4210124755"]}],"countries":["EG","US"],"is_corresponding":false,"raw_author_name":"Clark, Jennifer A.","raw_affiliation_strings":["National Institute of Standards and Technology"],"raw_orcid":"https://orcid.org/0000-0003-4897-5651","affiliations":[{"raw_affiliation_string":"National Institute of Standards and Technology","institution_ids":["https://openalex.org/I4210124755","https://openalex.org/I1321296531"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":25,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.6320000290870667,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.6320000290870667,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.09070000052452087,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.05550000071525574,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.5600000023841858},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.5561000108718872},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5027999877929688},{"id":"https://openalex.org/keywords/estimator","display_name":"Estimator","score":0.5023000240325928},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.4668999910354614},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.4629000127315521},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.45329999923706055},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.36890000104904175}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7332000136375427},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.5600000023841858},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.5561000108718872},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5027999877929688},{"id":"https://openalex.org/C185429906","wikidata":"https://www.wikidata.org/wiki/Q1130160","display_name":"Estimator","level":2,"score":0.5023000240325928},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.4668999910354614},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.4629000127315521},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.45329999923706055},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.438400000333786},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.36890000104904175},{"id":"https://openalex.org/C186370098","wikidata":"https://www.wikidata.org/wiki/Q442787","display_name":"Energy (signal processing)","level":2,"score":0.36739999055862427},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35899999737739563},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.3393999934196472},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.33239999413490295},{"id":"https://openalex.org/C2777303404","wikidata":"https://www.wikidata.org/wiki/Q759757","display_name":"Convergence (economics)","level":2,"score":0.310699999332428},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.30219998955726624},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.29750001430511475},{"id":"https://openalex.org/C174348530","wikidata":"https://www.wikidata.org/wiki/Q188635","display_name":"Bridging (networking)","level":2,"score":0.29339998960494995},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.2896000146865845},{"id":"https://openalex.org/C138827492","wikidata":"https://www.wikidata.org/wiki/Q6661985","display_name":"Data processing","level":2,"score":0.28760001063346863},{"id":"https://openalex.org/C24756922","wikidata":"https://www.wikidata.org/wiki/Q1757694","display_name":"Data quality","level":3,"score":0.2578999996185303},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.25780001282691956},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.2526000142097473}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.17411828","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17411828","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.5281/zenodo.17411828","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17411828","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy","score":0.7948795557022095}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"alchemlyb":[0,83],"is":[1],"an":[2],"open-source":[3],"Python":[4],"software":[5],"package":[6],"for":[7,22,77],"the":[8,35,41,100,106],"analysis":[9,31,75,97],"of":[10,25,37,43,57],"alchemical":[11],"free":[12,29,65],"energy":[13,30,66],"calculations.":[14],"Its":[15],"functionality":[16],"contains":[17,85],"individual":[18],"composable":[19],"building":[20,92],"blocks":[21,93],"all":[23],"aspects":[24],"a":[26,95],"full":[27],"typical":[28],"workflow,":[32],"starting":[33],"with":[34],"extraction":[36],"raw":[38],"data":[39,51,78,102],"from":[40,68,99],"output":[42],"diverse":[44],"molecular":[45],"simulation":[46,69],"packages,":[47],"moving":[48],"on":[49],"to":[50,63,105],"preprocessing":[52],"tasks":[53],"such":[54],"as":[55],"decorrelation":[56],"time":[58],"series,":[59],"using":[60],"various":[61],"estimators":[62],"derive":[64],"estimates":[67],"samples,":[70],"and":[71,81],"finally":[72],"providing":[73],"quality":[74],"tools":[76],"convergence":[79],"checking":[80],"visualization.":[82],"also":[84],"high-level":[86],"end-to-end":[87],"workflows":[88],"that":[89],"combine":[90],"multiple":[91],"into":[94],"user-friendly":[96],"pipeline":[98],"initial":[101],"input":[103],"stage":[104],"final":[107],"results.":[108]},"counts_by_year":[],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-24T00:00:00"}
