{"id":"https://openalex.org/W7107877359","doi":"https://doi.org/10.5281/zenodo.17380926","title":"Trend-Aligner: a retention time modeling-based feature alignment method for untargeted LC-MS data analysis","display_name":"Trend-Aligner: a retention time modeling-based feature alignment method for untargeted LC-MS data analysis","publication_year":2025,"publication_date":"2025-11-27","ids":{"openalex":"https://openalex.org/W7107877359","doi":"https://doi.org/10.5281/zenodo.17380926"},"language":null,"primary_location":{"id":"doi:10.5281/zenodo.17380926","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17380926","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.17380926","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Wang, Ruimin","orcid":"https://orcid.org/0000-0003-0879-0337"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wang, Ruimin","raw_affiliation_strings":["Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA"],"raw_orcid":"https://orcid.org/0000-0003-0879-0337","affiliations":[{"raw_affiliation_string":"Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Ren, Shouyang","orcid":"https://orcid.org/0009-0003-2124-4573"},"institutions":[{"id":"https://openalex.org/I4210106451","display_name":"Jinan Central Hospital","ror":"https://ror.org/01fr19c68","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210106451"]},{"id":"https://openalex.org/I4210163399","display_name":"Shandong First Medical University","ror":"https://ror.org/05jb9pq57","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210163399"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ren, Shouyang","raw_affiliation_strings":["Central Hospital Affiliated to Shandong First Medical University, No. 105 Jiefang Road, Jinan, 250000, Shandong, China","The Second Affiliated Hospital of Shandong First Medical University, Shandong First Medical University & Shandong Academy of Medical Sciences, Taian, 271000, Shandong, China"],"raw_orcid":"https://orcid.org/0009-0003-2124-4573","affiliations":[{"raw_affiliation_string":"Central Hospital Affiliated to Shandong First Medical University, No. 105 Jiefang Road, Jinan, 250000, Shandong, China","institution_ids":["https://openalex.org/I4210106451","https://openalex.org/I4210163399"]},{"raw_affiliation_string":"The Second Affiliated Hospital of Shandong First Medical University, Shandong First Medical University & Shandong Academy of Medical Sciences, Taian, 271000, Shandong, China","institution_ids":["https://openalex.org/I4210163399"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Caron, Etienne","orcid":"https://orcid.org/0000-0003-2770-6970"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Caron, Etienne","raw_affiliation_strings":["Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA","Yale Center for Immuno-Oncology, Yale Center for Systems and Engineering Immunology, Yale Center for Infection and Immunity, Yale School of Medicine, New Haven, CT, USA"],"raw_orcid":"https://orcid.org/0000-0003-2770-6970","affiliations":[{"raw_affiliation_string":"Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"Yale Center for Immuno-Oncology, Yale Center for Systems and Engineering Immunology, Yale Center for Infection and Immunity, Yale School of Medicine, New Haven, CT, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":null,"display_name":"Lu, Miaoshan","orcid":"https://orcid.org/0000-0002-3394-0598"},"institutions":[{"id":"https://openalex.org/I4210106451","display_name":"Jinan Central Hospital","ror":"https://ror.org/01fr19c68","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210106451"]},{"id":"https://openalex.org/I4210163399","display_name":"Shandong First Medical University","ror":"https://ror.org/05jb9pq57","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210163399"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lu, Miaoshan","raw_affiliation_strings":["Central Hospital Affiliated to Shandong First Medical University, No. 105 Jiefang Road, Jinan, 250000, Shandong, China","School of Medical Information and Artificial Intelligence, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan, Shandong Province 250117, China"],"raw_orcid":"https://orcid.org/0000-0002-3394-0598","affiliations":[{"raw_affiliation_string":"Central Hospital Affiliated to Shandong First Medical University, No. 105 Jiefang Road, Jinan, 250000, Shandong, China","institution_ids":["https://openalex.org/I4210106451","https://openalex.org/I4210163399"]},{"raw_affiliation_string":"School of Medical Information and Artificial Intelligence, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan, Shandong Province 250117, China","institution_ids":["https://openalex.org/I4210163399"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jiang, Hengxuan","orcid":"https://orcid.org/0000-0002-3881-0338"},"institutions":[{"id":"https://openalex.org/I4210106451","display_name":"Jinan Central Hospital","ror":"https://ror.org/01fr19c68","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210106451"]},{"id":"https://openalex.org/I4210163399","display_name":"Shandong First Medical University","ror":"https://ror.org/05jb9pq57","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210163399"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiang, Hengxuan","raw_affiliation_strings":["Central Hospital Affiliated to Shandong First Medical University, No. 105 Jiefang Road, Jinan, 250000, Shandong, China"],"raw_orcid":"https://orcid.org/0000-0002-3881-0338","affiliations":[{"raw_affiliation_string":"Central Hospital Affiliated to Shandong First Medical University, No. 105 Jiefang Road, Jinan, 250000, Shandong, China","institution_ids":["https://openalex.org/I4210106451","https://openalex.org/I4210163399"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Wang, Xixi","orcid":"https://orcid.org/0000-0001-7550-4041"},"institutions":[{"id":"https://openalex.org/I69356397","display_name":"Xi\u2019an Jiaotong-Liverpool University","ror":"https://ror.org/03zmrmn05","country_code":"CN","type":"education","lineage":["https://openalex.org/I69356397"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wang, Xixi","raw_affiliation_strings":["Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu Province, China"],"raw_orcid":"https://orcid.org/0000-0001-7550-4041","affiliations":[{"raw_affiliation_string":"Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu Province, China","institution_ids":["https://openalex.org/I69356397"]}]},{"author_position":"middle","author":{"id":null,"display_name":"An, Shaowei","orcid":"https://orcid.org/0000-0002-6658-9386"},"institutions":[{"id":"https://openalex.org/I3133055985","display_name":"Westlake University","ror":"https://ror.org/05hfa4n20","country_code":"CN","type":"education","lineage":["https://openalex.org/I3133055985"]},{"id":"https://openalex.org/I4210163399","display_name":"Shandong First Medical University","ror":"https://ror.org/05jb9pq57","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210163399"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"An, Shaowei","raw_affiliation_strings":["School of Medical Information and Artificial Intelligence, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan, Shandong Province 250117, China","School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China"],"raw_orcid":"https://orcid.org/0000-0002-6658-9386","affiliations":[{"raw_affiliation_string":"School of Medical Information and Artificial Intelligence, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan, Shandong Province 250117, China","institution_ids":["https://openalex.org/I4210163399"]},{"raw_affiliation_string":"School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China","institution_ids":["https://openalex.org/I3133055985"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Xie, Cong","orcid":"https://orcid.org/0000-0001-5950-8202"},"institutions":[{"id":"https://openalex.org/I152033890","display_name":"Hainan Normal University","ror":"https://ror.org/031dhcv14","country_code":"CN","type":"education","lineage":["https://openalex.org/I152033890"]},{"id":"https://openalex.org/I4210106451","display_name":"Jinan Central Hospital","ror":"https://ror.org/01fr19c68","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210106451"]},{"id":"https://openalex.org/I4210163399","display_name":"Shandong First Medical University","ror":"https://ror.org/05jb9pq57","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210163399"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xie, Cong","raw_affiliation_strings":["Central Hospital Affiliated to Shandong First Medical University, No. 105 Jiefang Road, Jinan, 250000, Shandong, China","Key Laboratory of Tropical Medicinal Plant Chemistry of Ministry of Education, College of Chemistry and Chemical Engineering, Hainan Normal University, Haikou, 571158, Hainan, China"],"raw_orcid":"https://orcid.org/0000-0001-5950-8202","affiliations":[{"raw_affiliation_string":"Central Hospital Affiliated to Shandong First Medical University, No. 105 Jiefang Road, Jinan, 250000, Shandong, China","institution_ids":["https://openalex.org/I4210106451","https://openalex.org/I4210163399"]},{"raw_affiliation_string":"Key Laboratory of Tropical Medicinal Plant Chemistry of Ministry of Education, College of Chemistry and Chemical Engineering, Hainan Normal University, Haikou, 571158, Hainan, China","institution_ids":["https://openalex.org/I152033890"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Tong, Junjie","orcid":"https://orcid.org/0000-0001-6334-9312"},"institutions":[{"id":"https://openalex.org/I152033890","display_name":"Hainan Normal University","ror":"https://ror.org/031dhcv14","country_code":"CN","type":"education","lineage":["https://openalex.org/I152033890"]},{"id":"https://openalex.org/I4210106451","display_name":"Jinan Central Hospital","ror":"https://ror.org/01fr19c68","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210106451"]},{"id":"https://openalex.org/I4210163399","display_name":"Shandong First Medical University","ror":"https://ror.org/05jb9pq57","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210163399"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tong, Junjie","raw_affiliation_strings":["Central Hospital Affiliated to Shandong First Medical University, No. 105 Jiefang Road, Jinan, 250000, Shandong, China","Key Laboratory of Tropical Medicinal Plant Chemistry of Ministry of Education, College of Chemistry and Chemical Engineering, Hainan Normal University, Haikou, 571158, Hainan, China"],"raw_orcid":"https://orcid.org/0000-0001-6334-9312","affiliations":[{"raw_affiliation_string":"Central Hospital Affiliated to Shandong First Medical University, No. 105 Jiefang Road, Jinan, 250000, Shandong, China","institution_ids":["https://openalex.org/I4210106451","https://openalex.org/I4210163399"]},{"raw_affiliation_string":"Key Laboratory of Tropical Medicinal Plant Chemistry of Ministry of Education, College of Chemistry and Chemical Engineering, Hainan Normal University, Haikou, 571158, Hainan, China","institution_ids":["https://openalex.org/I152033890"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Chen, Jingying","orcid":"https://orcid.org/0000-0002-2479-818X"},"institutions":[{"id":"https://openalex.org/I4210106451","display_name":"Jinan Central Hospital","ror":"https://ror.org/01fr19c68","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210106451"]},{"id":"https://openalex.org/I4210163399","display_name":"Shandong First Medical University","ror":"https://ror.org/05jb9pq57","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210163399"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chen, Jingying","raw_affiliation_strings":["Central Hospital Affiliated to Shandong First Medical University, No. 105 Jiefang Road, Jinan, 250000, Shandong, China"],"raw_orcid":"https://orcid.org/0000-0002-2479-818X","affiliations":[{"raw_affiliation_string":"Central Hospital Affiliated to Shandong First Medical University, No. 105 Jiefang Road, Jinan, 250000, Shandong, China","institution_ids":["https://openalex.org/I4210106451","https://openalex.org/I4210163399"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jiahua, Hong","orcid":"https://orcid.org/0009-0005-6576-1809"},"institutions":[{"id":"https://openalex.org/I4210163399","display_name":"Shandong First Medical University","ror":"https://ror.org/05jb9pq57","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210163399"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiahua, Hong","raw_affiliation_strings":["School of Medical Information and Artificial Intelligence, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan, Shandong Province 250117, China"],"raw_orcid":"https://orcid.org/0009-0005-6576-1809","affiliations":[{"raw_affiliation_string":"School of Medical Information and Artificial Intelligence, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan, Shandong Province 250117, China","institution_ids":["https://openalex.org/I4210163399"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Zhang, Kai","orcid":"https://orcid.org/0009-0004-7914-9269"},"institutions":[{"id":"https://openalex.org/I4210163399","display_name":"Shandong First Medical University","ror":"https://ror.org/05jb9pq57","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210163399"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhang, Kai","raw_affiliation_strings":["School of Medical Information and Artificial Intelligence, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan, Shandong Province 250117, China"],"raw_orcid":"https://orcid.org/0009-0004-7914-9269","affiliations":[{"raw_affiliation_string":"School of Medical Information and Artificial Intelligence, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan, Shandong Province 250117, China","institution_ids":["https://openalex.org/I4210163399"]}]},{"author_position":"last","author":{"id":null,"display_name":"Yu, Changbin","orcid":"https://orcid.org/0000-0002-6510-8974"},"institutions":[{"id":"https://openalex.org/I4210106451","display_name":"Jinan Central Hospital","ror":"https://ror.org/01fr19c68","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210106451"]},{"id":"https://openalex.org/I4210163399","display_name":"Shandong First Medical University","ror":"https://ror.org/05jb9pq57","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210163399"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu, Changbin","raw_affiliation_strings":["Central Hospital Affiliated to Shandong First Medical University, No. 105 Jiefang Road, Jinan, 250000, Shandong, China","School of Medical Information and Artificial Intelligence, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan, Shandong Province 250117, China"],"raw_orcid":"https://orcid.org/0000-0002-6510-8974","affiliations":[{"raw_affiliation_string":"Central Hospital Affiliated to Shandong First Medical University, No. 105 Jiefang Road, Jinan, 250000, Shandong, China","institution_ids":["https://openalex.org/I4210106451","https://openalex.org/I4210163399"]},{"raw_affiliation_string":"School of Medical Information and Artificial Intelligence, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan, Shandong Province 250117, China","institution_ids":["https://openalex.org/I4210163399"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.7214999794960022},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5719000101089478},{"id":"https://openalex.org/keywords/feature-extraction","display_name":"Feature extraction","score":0.40290001034736633},{"id":"https://openalex.org/keywords/retention-time","display_name":"Retention time","score":0.3937000036239624},{"id":"https://openalex.org/keywords/principal-component-analysis","display_name":"Principal component analysis","score":0.26739999651908875}],"concepts":[{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.7214999794960022},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6445000171661377},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6365000009536743},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5719000101089478},{"id":"https://openalex.org/C52622490","wikidata":"https://www.wikidata.org/wiki/Q1026626","display_name":"Feature extraction","level":2,"score":0.40290001034736633},{"id":"https://openalex.org/C3020018676","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Retention time","level":2,"score":0.3937000036239624},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3441999852657318},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3224000036716461},{"id":"https://openalex.org/C27438332","wikidata":"https://www.wikidata.org/wiki/Q2873","display_name":"Principal component analysis","level":2,"score":0.26739999651908875},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.25290000438690186}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.17380926","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17380926","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.17380926","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17380926","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"The":[0],"data":[1,36],"distributions":[2],"of":[3],"evaluation":[4,15,18],"datasets,":[5,13],"feature":[6,30],"lists,":[7],"alignment":[8,31],"results,":[9,16],"manual":[10],"annotated":[11],"reference":[12],"RAB":[14],"AUV":[17],"results":[19],"and":[20],"parameter":[21],"settings":[22],"for":[23,33],"paper":[24],"\"Trend-Aligner:":[25],"a":[26],"retention":[27],"time":[28],"modeling-based":[29],"method":[32],"untargeted":[34],"LC-MS":[35],"analysis\"":[37]},"counts_by_year":[],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2025-11-28T00:00:00"}
