{"id":"https://openalex.org/W7087649322","doi":"https://doi.org/10.5281/zenodo.17313802","title":"MARTS-DB: A Database of Mechanisms And Reactions of Terpene Synthases V2.0","display_name":"MARTS-DB: A Database of Mechanisms And Reactions of Terpene Synthases V2.0","publication_year":2025,"publication_date":"2025-03-10","ids":{"openalex":"https://openalex.org/W7087649322","doi":"https://doi.org/10.5281/zenodo.17313802"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.17313802","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17313802","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.17313802","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Engst, Martin","orcid":"https://orcid.org/0009-0004-5043-1420"},"institutions":[{"id":"https://openalex.org/I202391551","display_name":"Czech Academy of Sciences","ror":"https://ror.org/053avzc18","country_code":"CZ","type":"government","lineage":["https://openalex.org/I202391551"]},{"id":"https://openalex.org/I4210145889","display_name":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","ror":"https://ror.org/04nfjn472","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210145889"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"Engst, Martin","raw_affiliation_strings":["Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry"],"raw_orcid":"https://orcid.org/0009-0004-5043-1420","affiliations":[{"raw_affiliation_string":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","institution_ids":["https://openalex.org/I4210145889","https://openalex.org/I202391551"]}]},{"author_position":"middle","author":{"id":null,"display_name":"\u010calounov\u00e1, Tereza","orcid":null},"institutions":[{"id":"https://openalex.org/I202391551","display_name":"Czech Academy of Sciences","ror":"https://ror.org/053avzc18","country_code":"CZ","type":"government","lineage":["https://openalex.org/I202391551"]},{"id":"https://openalex.org/I4210145889","display_name":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","ror":"https://ror.org/04nfjn472","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210145889"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"\u010calounov\u00e1, Tereza","raw_affiliation_strings":["Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","institution_ids":["https://openalex.org/I4210145889","https://openalex.org/I202391551"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Samusevich, Raman","orcid":"https://orcid.org/0009-0003-1684-3600"},"institutions":[{"id":"https://openalex.org/I202391551","display_name":"Czech Academy of Sciences","ror":"https://ror.org/053avzc18","country_code":"CZ","type":"government","lineage":["https://openalex.org/I202391551"]},{"id":"https://openalex.org/I4210145889","display_name":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","ror":"https://ror.org/04nfjn472","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210145889"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Samusevich, Raman","raw_affiliation_strings":["Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry"],"raw_orcid":"https://orcid.org/0009-0003-1684-3600","affiliations":[{"raw_affiliation_string":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","institution_ids":["https://openalex.org/I4210145889","https://openalex.org/I202391551"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Bushuiev, Roman","orcid":"https://orcid.org/0000-0003-1769-1509"},"institutions":[{"id":"https://openalex.org/I202391551","display_name":"Czech Academy of Sciences","ror":"https://ror.org/053avzc18","country_code":"CZ","type":"government","lineage":["https://openalex.org/I202391551"]},{"id":"https://openalex.org/I4210145889","display_name":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","ror":"https://ror.org/04nfjn472","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210145889"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Bushuiev, Roman","raw_affiliation_strings":["Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry"],"raw_orcid":"https://orcid.org/0000-0003-1769-1509","affiliations":[{"raw_affiliation_string":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","institution_ids":["https://openalex.org/I4210145889","https://openalex.org/I202391551"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Bushuiev, Anton","orcid":"https://orcid.org/0009-0007-4783-6584"},"institutions":[{"id":"https://openalex.org/I44504214","display_name":"Czech Technical University in Prague","ror":"https://ror.org/03kqpb082","country_code":"CZ","type":"education","lineage":["https://openalex.org/I44504214"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Bushuiev, Anton","raw_affiliation_strings":["Czech Technical University in Prague"],"raw_orcid":"https://orcid.org/0009-0007-4783-6584","affiliations":[{"raw_affiliation_string":"Czech Technical University in Prague","institution_ids":["https://openalex.org/I44504214"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Chatpatanasiri, Ratthachat","orcid":null},"institutions":[{"id":"https://openalex.org/I44504214","display_name":"Czech Technical University in Prague","ror":"https://ror.org/03kqpb082","country_code":"CZ","type":"education","lineage":["https://openalex.org/I44504214"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Chatpatanasiri, Ratthachat","raw_affiliation_strings":["Czech Technical University in Prague"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Czech Technical University in Prague","institution_ids":["https://openalex.org/I44504214"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Akme\u015fe, Safa Mert","orcid":"https://orcid.org/0009-0004-5907-8651"},"institutions":[{"id":"https://openalex.org/I202391551","display_name":"Czech Academy of Sciences","ror":"https://ror.org/053avzc18","country_code":"CZ","type":"government","lineage":["https://openalex.org/I202391551"]},{"id":"https://openalex.org/I4210145889","display_name":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","ror":"https://ror.org/04nfjn472","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210145889"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Akme\u015fe, Safa Mert","raw_affiliation_strings":["Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry"],"raw_orcid":"https://orcid.org/0009-0004-5907-8651","affiliations":[{"raw_affiliation_string":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","institution_ids":["https://openalex.org/I4210145889","https://openalex.org/I202391551"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Perkovic, Milana","orcid":"https://orcid.org/0009-0006-4015-4444"},"institutions":[{"id":"https://openalex.org/I202391551","display_name":"Czech Academy of Sciences","ror":"https://ror.org/053avzc18","country_code":"CZ","type":"government","lineage":["https://openalex.org/I202391551"]},{"id":"https://openalex.org/I4210145889","display_name":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","ror":"https://ror.org/04nfjn472","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210145889"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Perkovic, Milana","raw_affiliation_strings":["Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry"],"raw_orcid":"https://orcid.org/0009-0006-4015-4444","affiliations":[{"raw_affiliation_string":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","institution_ids":["https://openalex.org/I4210145889","https://openalex.org/I202391551"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Sold\u00e1t, Matou\u0161","orcid":"https://orcid.org/0009-0004-2317-6532"},"institutions":[{"id":"https://openalex.org/I202391551","display_name":"Czech Academy of Sciences","ror":"https://ror.org/053avzc18","country_code":"CZ","type":"government","lineage":["https://openalex.org/I202391551"]},{"id":"https://openalex.org/I4210145889","display_name":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","ror":"https://ror.org/04nfjn472","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210145889"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Sold\u00e1t, Matou\u0161","raw_affiliation_strings":["Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry"],"raw_orcid":"https://orcid.org/0009-0004-2317-6532","affiliations":[{"raw_affiliation_string":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","institution_ids":["https://openalex.org/I4210145889","https://openalex.org/I202391551"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Tajovsk\u00e1, Ad\u00e9la","orcid":null},"institutions":[{"id":"https://openalex.org/I202391551","display_name":"Czech Academy of Sciences","ror":"https://ror.org/053avzc18","country_code":"CZ","type":"government","lineage":["https://openalex.org/I202391551"]},{"id":"https://openalex.org/I4210145889","display_name":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","ror":"https://ror.org/04nfjn472","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210145889"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Tajovsk\u00e1, Ad\u00e9la","raw_affiliation_strings":["Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","institution_ids":["https://openalex.org/I4210145889","https://openalex.org/I202391551"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Pluskal, Tom\u00e1\u0161","orcid":"https://orcid.org/0000-0002-6940-3006"},"institutions":[{"id":"https://openalex.org/I202391551","display_name":"Czech Academy of Sciences","ror":"https://ror.org/053avzc18","country_code":"CZ","type":"government","lineage":["https://openalex.org/I202391551"]},{"id":"https://openalex.org/I4210145889","display_name":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","ror":"https://ror.org/04nfjn472","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210145889"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Pluskal, Tom\u00e1\u0161","raw_affiliation_strings":["Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry"],"raw_orcid":"https://orcid.org/0000-0002-6940-3006","affiliations":[{"raw_affiliation_string":"Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry","institution_ids":["https://openalex.org/I4210145889","https://openalex.org/I202391551"]}]},{"author_position":"last","author":{"id":null,"display_name":"Sivic, Josef","orcid":"https://orcid.org/0000-0002-2554-5301"},"institutions":[{"id":"https://openalex.org/I44504214","display_name":"Czech Technical University in Prague","ror":"https://ror.org/03kqpb082","country_code":"CZ","type":"education","lineage":["https://openalex.org/I44504214"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Sivic, Josef","raw_affiliation_strings":["Czech Technical University in Prague"],"raw_orcid":"https://orcid.org/0000-0002-2554-5301","affiliations":[{"raw_affiliation_string":"Czech Technical University in Prague","institution_ids":["https://openalex.org/I44504214"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I202391551","https://openalex.org/I4210145889"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":{"id":"https://openalex.org/T13370","display_name":"Diverse Scientific and Economic Studies","score":0.03290000185370445,"subfield":{"id":"https://openalex.org/subfields/2002","display_name":"Economics and Econometrics"},"field":{"id":"https://openalex.org/fields/20","display_name":"Economics, Econometrics and Finance"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T13370","display_name":"Diverse Scientific and Economic Studies","score":0.03290000185370445,"subfield":{"id":"https://openalex.org/subfields/2002","display_name":"Economics and Econometrics"},"field":{"id":"https://openalex.org/fields/20","display_name":"Economics, Econometrics and Finance"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11724","display_name":"Inflammatory Myopathies and Dermatomyositis","score":0.008299999870359898,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11662","display_name":"Legal Cases and Commentary","score":0.004999999888241291,"subfield":{"id":"https://openalex.org/subfields/2743","display_name":"Reproductive Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.8378999829292297},{"id":"https://openalex.org/keywords/terpene","display_name":"Terpene","score":0.7369999885559082},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.4415999948978424},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.37860000133514404},{"id":"https://openalex.org/keywords/type","display_name":"Type (biology)","score":0.3138999938964844},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.3111000061035156}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.8378999829292297},{"id":"https://openalex.org/C44937612","wikidata":"https://www.wikidata.org/wiki/Q212364","display_name":"Terpene","level":2,"score":0.7369999885559082},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5823000073432922},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.4415999948978424},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4108000099658966},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.37860000133514404},{"id":"https://openalex.org/C2777299769","wikidata":"https://www.wikidata.org/wiki/Q3707858","display_name":"Type (biology)","level":2,"score":0.3138999938964844},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.3111000061035156},{"id":"https://openalex.org/C206103511","wikidata":"https://www.wikidata.org/wiki/Q426694","display_name":"Terpenoid","level":2,"score":0.3089999854564667},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.30250000953674316},{"id":"https://openalex.org/C21959979","wikidata":"https://www.wikidata.org/wiki/Q36774","display_name":"Web page","level":2,"score":0.3003000020980835},{"id":"https://openalex.org/C553450214","wikidata":"https://www.wikidata.org/wiki/Q851162","display_name":"Biosynthesis","level":3,"score":0.2854999899864197},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.2768999934196472},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27250000834465027},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.267300009727478}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.17313802","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17313802","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.17313802","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17313802","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"dataset"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","score":0.4208676517009735,"display_name":"Life below water"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"A":[0,201,225,443],"manualy":[1],"curated":[2],"specialized":[3],"enzyme":[4,220],"dataset":[5,25,42,66],"of":[6,31,37,61,83,89,102,134,156,176,191,204,213,229,238,252,263,271,310,316,335,346,354,365,372,391,398,406,413,432,439,459,472,480,582,619,628,632,639,677,691,705,722,738,755,772,797,808,819,822,842,845,852,855,861,871,878,904],"characterized":[7],"terpene":[8,18,32,256,265,678],"synthases":[9,13,33,296,299],"and":[10,21,46,80,159,297,327,890],"isoprenyl":[11,294],"diphosphate":[12,295,385,426,790,835],"covering":[14],"all":[15,62,592],"the":[16,65,70,90,96,125,139,145,163,177,192,205,214,219,253,261,264,269,317,333,336,366,373,384,392,399,407,414,425,433,440,448,460,465,473,481,488,508,536,539,543,550,564,583,601,607,612,623,630,633,674,689,696,703,739,756,773,789,798,809,820,834,843,853,872,895,905],"major":[17,551,567],"types,":[19],"classes":[20],"taxonomic":[22,227],"kingdoms.":[23],"The":[24,41,54,73,87,116,127,208,217,250,273,314,361,369,388,395,402,410,429,436,456,463,477,496,614,626,670,680,719,735,752,769,793,805,816,838,849,859,876,883,893,901],"also":[26,76,301],"covers":[27],"known":[28,675],"reaction":[29,39,132,135,160,337,449,466,608,706,778,863],"mechanisms":[30,161,676,681],"described":[34,143,587,701,867],"as":[35,67,69,111,113,142,277,291,307,379,420,512,560,588,784,829],"cascades":[36],"individual":[38,131],"steps.":[40],"can":[43],"be":[44],"browsed":[45],"accesed":[47],"from":[48],"a":[49,58,186,347,451,493,502,519,522,643,692],"dediacated":[50],"web":[51,74,147],"page":[52,56,75],"https://www.marts-db.org/.":[53],"Help":[55],"provides":[57],"detailed":[59],"description":[60],"fields":[63],"within":[64,124],"well":[68,112],"curation":[71],"process.":[72],"allows":[77],"for":[78,95,182,282,286,661,880],"downloads":[79],"user":[81],"submissions":[82],"new":[84],"data.Update":[85],"2.0:":[86],"accuracy":[88],"data":[91,140],"has":[92,108,450],"been":[93,109,234,659],"increased":[94],"entire":[97,209],"dataset,":[98],"leading":[99],"to":[100,484,525,549,611,642,651],"deletion":[101],"multiple":[103,556],"enzymes.":[104],"Reorted":[105],"product":[106,544,634,821,844,854],"ratios":[107],"recorded":[110],"expremental":[114],"conditions.":[115,490],"file":[117,128],"\"reactions.csv\"":[118],"describes":[119,673],"reactions":[120,321,330,341],"catalyzed":[121],"by":[122,344,352,702,732,749,766],"enzymes":[123,183,723,740,757],"dataset.":[126],"\"mechanisms.csv\"":[129],"describe":[130,687],"steps":[133],"mechanisms.":[136],"Following":[137],"is":[138,151,168,268,275,305,492,518,542,546,586,713],"dictionary":[141],"on":[144,332,383,424,507,535,605,788,833],"database":[146],"page.":[148,874],"MARTS":[149,396,437,457,753,806,850,902],"ID":[150,175,181,390,397,431,438,458,807,851,903],"an":[152,278,355,652],"internal":[153],"persistent":[154],"identifier":[155],"enzymes,":[157],"molecules":[158],"in":[162,195,245,453,538,695,728,745,762,868],"MARTS-DB.":[164],"Reactions.csv":[165],"Every":[166,711],"line":[167],"one":[169,581,714],"reaction:":[170],"Column":[171,716],"Content":[172,717],"Enzyme_marts_ID":[173],"Marts":[174],"enzyme.":[178,613],"Uniprot_ID":[179],"UniProt":[180,187,720],"that":[184,545,591,657,707,724,741,758,775,800,811],"have":[185,233,658],"record.":[188],"Genbank_ID":[189],"Record":[190],"protein":[193],"transcript":[194],"GenBank,":[196],"if":[197,447],"it":[198],"exists.":[199],"Enzyme_name":[200],"descriptive":[202],"name":[203,364,405,796,841],"protein.":[206,215],"Aminoacid_sequence":[207],"amino":[210],"acid":[211],"sequence":[212],"Species":[216],"species":[218],"was":[221,467,609,897],"isolated":[222],"from.":[223,469,899],"Kingdom":[224],"broader":[226],"group":[228],"this":[230,662,726,743,760,777,802,813,823,846,856,862,881],"species.":[231],"Kingdoms":[232],"split":[235],"into":[236,324,684],"groups":[237,241],"interest.":[239],"Those":[240],"are":[242,289,300,322,342,377,418,558,594,616,635,682,700,708,782,827,866,885],"always":[243],"written":[244,276,378,419,783,828],"brackets":[246],"like":[247],"animalia(corals).":[248],"Type":[249],"type":[251,259,262,274,304,860],"reaction.":[254,318],"In":[255,553,578],"synthase":[257,320],"reactions,":[258],"means":[260,521],"product,":[266,482],"which":[267,606,686],"number":[270,520,572],"carbons.":[272],"abbreviation,":[279],"e.g.,":[280],"mono":[281],"monoterpenes":[283],"or":[284,357,645],"di":[285],"diterpenes.":[287],"Sesquiterpenes":[288],"abbreviated":[290],"sesq.":[292],"Since":[293],"squalene":[298],"included,":[302],"their":[303,729,746,763,869],"given":[306],"pt,":[308],"abbreviation":[309],"prenyl":[311],"transferases.":[312],"Class":[313,339],"class":[315,325,328,350],"Terpene":[319],"divided":[323,683],"I":[326,340],"II":[329,351],"based":[331,505,534,604],"initiation":[334],"cascade.":[338],"initiated":[343],"abstraction":[345],"pyrophosphate,":[348],"while":[349],"protonation":[353],"alkyl":[356],"epoxide":[358],"bond.":[359],"Substrate_name":[360,792],"commonly":[362,403,794,839],"used":[363,404,621,795,840],"substrate.":[367,374,393,400],"Substrate_smiles":[368,768],"SMILES":[370,411,770,817],"representation":[371,412,771,818],"All":[375,416,780,825],"diphosphates":[376,417,781,826],"oxoanions":[380,421,785,830],"with":[381,422,786,831],"charge":[382,423,787,832],"group.":[386,427,791,836],"Substrate_chebi_ID":[387],"ChEBI":[389,430],"Substrate_marts_ID":[394],"Product_name":[401,837],"product.":[408,415,434,441,552,669],"Product_smiles":[409,815],"Product_chebi_ID":[428],"Product_marts_ID":[435],"Reaction_has_mechanism":[442],"boolean":[444],"value":[445],"indicating":[446],"mechanism":[452,727,744,761,896],"MARTS.":[454],"Mechanism_marts_ID":[455],"mechanism.":[461,882,906],"Publication":[462,892],"publication":[464,475,894],"taken":[468,898],"Publication_doi":[470],"DOI":[471],"source":[474],"Product_yield":[476],"reported":[478,602],"ratio":[479,523],"compare":[483,524],"other":[485,526],"products":[486,527,557],"at":[487],"same":[489],"It":[491],"text":[494],"value.":[495],"existing":[497],"formats":[498],"are:":[499],"X%":[500],"meaning":[501,590],"relative":[503],"percentage":[504],"usualy":[506],"chromatogram":[509],"(rarely":[510],"exists":[511],"\"less":[513],"X%\"),":[514],"X":[515,517],"where":[516],"e.g.":[528],"2:1.":[529],"Major,":[530],"second,":[531],"minor,":[532],"trace,":[533],"definition":[537],"publication.":[540],"Second":[541],"close":[547],"second":[548,569],"some":[554,579],"cases":[555,580],"marked":[559],"major.":[561],"When":[562],"mixed":[563],"order":[565],"is:":[566],">":[568,570,573,575],"any":[571,668],"minor":[574],"trace":[576],"Major_substrate":[577],"accepted":[584,595],"substrates":[585],"major,":[589],"others":[593],"significantly":[596],"less.":[597],"Experiment_conditions":[598],"Tags":[599],"describing":[600],"conditions":[603],"assigned":[610],"tags":[615],"simplified":[617],"abbreviations":[618],"methods":[620,627,884],"during":[622],"function":[624],"elucidation.":[625],"assigning":[629],"structure":[631],"library":[636,644],"-":[637,649],"compariosn":[638],"MS":[640],"spectra":[641],"literature":[646],"data,":[647],"standard":[648],"comparison":[650],"authentic":[653],"standard.":[654],"Negative_substrates":[655],"Substrates":[656],"tested":[660],"enzyme,":[663],"but":[664],"did":[665],"not":[666],"yield":[667],"next":[671],"table":[672],"synthases.":[679],"steps,":[685],"roughly":[688],"change":[690],"single":[693],"bond":[694],"reactive":[697],"carbocation.":[698],"Steps":[699],"types":[704],"taking":[709],"place.":[710],"row":[712],"step.":[715,779,803,814,824,847,857,864],"Enzyme_uniprot_ids":[718],"IDs":[721,737,754],"utilize":[725,742,759],"reaction,":[730,747,764],"separated":[731,748,765],"commas.":[733,750,767],"Enzyme_genbank_ids":[734],"GenBank":[736],"Enzyme_marts_ids":[751],"molecule":[774,799,810],"enters":[776,801,812],"Substrate_marts_id":[804],"Product_marts_id":[848],"Reaction_type":[858],"Types":[865],"section":[870],"about":[873],"Evidence":[875],"method":[877],"investigation":[879],"usually":[886],"similarity,":[887],"trivial,":[888],"experiment,":[889],"calculation.":[891],"Mechanism_marts_id":[900]},"counts_by_year":[],"updated_date":"2026-03-11T06:11:40.159057","created_date":"2025-10-11T00:00:00"}
