{"id":"https://openalex.org/W7087415470","doi":"https://doi.org/10.5281/zenodo.17303785","title":"GenSPARC: Generalized Structure- and Property-Aware Representations of Language Models for Compound-Protein Interaction Prediction","display_name":"GenSPARC: Generalized Structure- and Property-Aware Representations of Language Models for Compound-Protein Interaction Prediction","publication_year":2025,"publication_date":"2025-10-09","ids":{"openalex":"https://openalex.org/W7087415470","doi":"https://doi.org/10.5281/zenodo.17303785"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.17303785","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17303785","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.17303785","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Zhang, Yiming","orcid":"https://orcid.org/0009-0000-8730-4047"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Zhang, Yiming","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Takemoto, Mizuki","orcid":"https://orcid.org/0000-0002-6339-6431"},"institutions":[{"id":"https://openalex.org/I4210166566","display_name":"Preferred Networks (Japan)","ror":"https://ror.org/05xeefy56","country_code":"JP","type":"company","lineage":["https://openalex.org/I4210166566"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takemoto, Mizuki","raw_affiliation_strings":["Preferred Networks (Japan)"],"affiliations":[{"raw_affiliation_string":"Preferred Networks (Japan)","institution_ids":["https://openalex.org/I4210166566"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Tomita, Atsuhiro","orcid":"https://orcid.org/0000-0003-3887-1429"},"institutions":[{"id":"https://openalex.org/I4210166566","display_name":"Preferred Networks (Japan)","ror":"https://ror.org/05xeefy56","country_code":"JP","type":"company","lineage":["https://openalex.org/I4210166566"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tomita, Atsuhiro","raw_affiliation_strings":["Preferred Networks (Japan)"],"affiliations":[{"raw_affiliation_string":"Preferred Networks (Japan)","institution_ids":["https://openalex.org/I4210166566"]}]},{"author_position":"last","author":{"id":null,"display_name":"Ishitani, Ryuichiro","orcid":"https://orcid.org/0000-0002-4136-5685"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Ishitani, Ryuichiro","raw_affiliation_strings":["Graduate School of Science, The University of Tokyo"],"affiliations":[{"raw_affiliation_string":"Graduate School of Science, The University of Tokyo","institution_ids":["https://openalex.org/I74801974"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":{"id":"https://openalex.org/T11011","display_name":"Frailty in Older Adults","score":0.7613999843597412,"subfield":{"id":"https://openalex.org/subfields/2717","display_name":"Geriatrics and Gerontology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11011","display_name":"Frailty in Older Adults","score":0.7613999843597412,"subfield":{"id":"https://openalex.org/subfields/2717","display_name":"Geriatrics and Gerontology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12246","display_name":"Chronic Disease Management Strategies","score":0.06400000303983688,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11376","display_name":"Geriatric Care and Nursing Homes","score":0.023600000888109207,"subfield":{"id":"https://openalex.org/subfields/3600","display_name":"General Health Professions"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4607999920845032},{"id":"https://openalex.org/keywords/language-model","display_name":"Language model","score":0.4399000108242035},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.3476000130176544},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.32580000162124634},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.29260000586509705},{"id":"https://openalex.org/keywords/computational-linguistics","display_name":"Computational linguistics","score":0.28859999775886536},{"id":"https://openalex.org/keywords/language-understanding","display_name":"Language understanding","score":0.2854999899864197}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6068000197410583},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5116000175476074},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4869999885559082},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4607999920845032},{"id":"https://openalex.org/C137293760","wikidata":"https://www.wikidata.org/wiki/Q3621696","display_name":"Language model","level":2,"score":0.4399000108242035},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.3476000130176544},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.32580000162124634},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.29260000586509705},{"id":"https://openalex.org/C155092808","wikidata":"https://www.wikidata.org/wiki/Q182557","display_name":"Computational linguistics","level":2,"score":0.28859999775886536},{"id":"https://openalex.org/C2983448237","wikidata":"https://www.wikidata.org/wiki/Q1078276","display_name":"Language understanding","level":2,"score":0.2854999899864197},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.27459999918937683},{"id":"https://openalex.org/C129792486","wikidata":"https://www.wikidata.org/wiki/Q1050419","display_name":"Language identification","level":3,"score":0.2671000063419342},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.2590000033378601},{"id":"https://openalex.org/C124304363","wikidata":"https://www.wikidata.org/wiki/Q673661","display_name":"Abstraction","level":2,"score":0.2587999999523163},{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.25600001215934753},{"id":"https://openalex.org/C2780806968","wikidata":"https://www.wikidata.org/wiki/Q6045196","display_name":"Interaction model","level":2,"score":0.2542000114917755},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.25360000133514404},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2502000033855438}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.17303785","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17303785","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.17303785","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17303785","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"dataset"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"This":[0],"dataset":[1],"was":[2],"used":[3],"in":[4,32],"the":[5,30,33],"paper":[6],"titled":[7],"\"GenSPARC:":[8],"Generalized":[9],"Structure-":[10],"and":[11],"Property-Aware":[12],"Representations":[13],"of":[14],"Language":[15],"Models":[16],"for":[17],"Compound-Protein":[18],"Interaction":[19],"Prediction\"":[20],"(link:":[21],"https://www.researchsquare.com/article/rs-6326235/v1":[22],").":[23],"For":[24],"detailed":[25],"descriptions,":[26],"please":[27],"refer":[28],"to":[29],"README":[31],"GitHub":[34],"repository.":[35],"https://github.com/pfnet-research/GenSPARC/blob/master/README.md":[36]},"counts_by_year":[],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2025-10-11T00:00:00"}
