{"id":"https://openalex.org/W7084398053","doi":"https://doi.org/10.5281/zenodo.17251809","title":"Benchmarking deep learning cortical lesion segmentation in Multiple Sclerosis MRI","display_name":"Benchmarking deep learning cortical lesion segmentation in Multiple Sclerosis MRI","publication_year":2025,"publication_date":"2025-07-15","ids":{"openalex":"https://openalex.org/W7084398053","doi":"https://doi.org/10.5281/zenodo.17251809"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.17251809","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17251809","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"type":"other","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.17251809","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Molchanova, Natalia","orcid":"https://orcid.org/0009-0004-3562-9025"},"institutions":[{"id":"https://openalex.org/I4210129267","display_name":"HES-SO Valais-Wallis","ror":"https://ror.org/03r5zec51","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891","https://openalex.org/I4210129267"]},{"id":"https://openalex.org/I4210133377","display_name":"Centre d'Imagerie BioMedicale","ror":"https://ror.org/03fw2bn12","country_code":"CH","type":"facility","lineage":["https://openalex.org/I4210133377"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Molchanova, Natalia","raw_affiliation_strings":["Faculty of Biology and Medicine, University of Lausanne (UNIL), Lausanne, Switzerland","Radiology Department, Lausanne University Hospital (CHUV), Lausanne, Switzerland","MedGIFT, Institute of Informatics, School of Management, HES\u2013SO Valais\u2013Wallis","CIBM Center for Biomedical Imaging, Lausanne, Switzerland"],"raw_orcid":"https://orcid.org/0009-0004-3562-9025","affiliations":[{"raw_affiliation_string":"Faculty of Biology and Medicine, University of Lausanne (UNIL), Lausanne, Switzerland","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Radiology Department, Lausanne University Hospital (CHUV), Lausanne, Switzerland","institution_ids":[]},{"raw_affiliation_string":"MedGIFT, Institute of Informatics, School of Management, HES\u2013SO Valais\u2013Wallis","institution_ids":["https://openalex.org/I4210129267"]},{"raw_affiliation_string":"CIBM Center for Biomedical Imaging, Lausanne, Switzerland","institution_ids":["https://openalex.org/I4210133377"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Cagol, Alessandro","orcid":"https://orcid.org/0000-0002-7703-0553"},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]},{"id":"https://openalex.org/I2802542264","display_name":"University Hospital of Basel","ror":"https://ror.org/04k51q396","country_code":"CH","type":"healthcare","lineage":["https://openalex.org/I2802542264"]},{"id":"https://openalex.org/I83816512","display_name":"University of Genoa","ror":"https://ror.org/0107c5v14","country_code":"IT","type":"education","lineage":["https://openalex.org/I83816512"]}],"countries":["CH","IT"],"is_corresponding":false,"raw_author_name":"Cagol, Alessandro","raw_affiliation_strings":["Translational Imaging in Neurology (ThINK) Basel, Department of Medicine and Biomedical Engineering, University Hospital Basel and University of Basel, Basel, Switzerland","Multiple Sclerosis Center, Department of Neurology, University Hospital Basel, Basel, Switzerland","Research Center for Clinical Neuroimmunology and Neuroscience Basel (RC2NB), University Hospital Basel and University of Basel, Basel, Switzerland","Dipartimento di Scienze della Salute, Universit\u00e0 degli Studi di Genova, Genova, Italy"],"raw_orcid":"https://orcid.org/0000-0002-7703-0553","affiliations":[{"raw_affiliation_string":"Translational Imaging in Neurology (ThINK) Basel, Department of Medicine and Biomedical Engineering, University Hospital Basel and University of Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I2802542264","https://openalex.org/I1850255"]},{"raw_affiliation_string":"Multiple Sclerosis Center, Department of Neurology, University Hospital Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I2802542264"]},{"raw_affiliation_string":"Research Center for Clinical Neuroimmunology and Neuroscience Basel (RC2NB), University Hospital Basel and University of Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I2802542264","https://openalex.org/I1850255"]},{"raw_affiliation_string":"Dipartimento di Scienze della Salute, Universit\u00e0 degli Studi di Genova, Genova, Italy","institution_ids":["https://openalex.org/I83816512"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Ocampo-Pineda, Mario","orcid":"https://orcid.org/0000-0003-2239-7355"},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]},{"id":"https://openalex.org/I2802542264","display_name":"University Hospital of Basel","ror":"https://ror.org/04k51q396","country_code":"CH","type":"healthcare","lineage":["https://openalex.org/I2802542264"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Ocampo-Pineda, Mario","raw_affiliation_strings":["Translational Imaging in Neurology (ThINK) Basel, Department of Medicine and Biomedical Engineering, University Hospital Basel and University of Basel, Basel, Switzerland","Multiple Sclerosis Center, Department of Neurology, University Hospital Basel, Basel, Switzerland","Research Center for Clinical Neuroimmunology and Neuroscience Basel (RC2NB), University Hospital Basel and University of Basel, Basel, Switzerland"],"raw_orcid":"https://orcid.org/0000-0003-2239-7355","affiliations":[{"raw_affiliation_string":"Translational Imaging in Neurology (ThINK) Basel, Department of Medicine and Biomedical Engineering, University Hospital Basel and University of Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I2802542264","https://openalex.org/I1850255"]},{"raw_affiliation_string":"Multiple Sclerosis Center, Department of Neurology, University Hospital Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I2802542264"]},{"raw_affiliation_string":"Research Center for Clinical Neuroimmunology and Neuroscience Basel (RC2NB), University Hospital Basel and University of Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I2802542264","https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Lu, Po-Jui","orcid":"https://orcid.org/0000-0001-6031-6865"},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]},{"id":"https://openalex.org/I2802542264","display_name":"University Hospital of Basel","ror":"https://ror.org/04k51q396","country_code":"CH","type":"healthcare","lineage":["https://openalex.org/I2802542264"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Lu, Po-Jui","raw_affiliation_strings":["Translational Imaging in Neurology (ThINK) Basel, Department of Medicine and Biomedical Engineering, University Hospital Basel and University of Basel, Basel, Switzerland","Multiple Sclerosis Center, Department of Neurology, University Hospital Basel, Basel, Switzerland","Research Center for Clinical Neuroimmunology and Neuroscience Basel (RC2NB), University Hospital Basel and University of Basel, Basel, Switzerland"],"raw_orcid":"https://orcid.org/0000-0001-6031-6865","affiliations":[{"raw_affiliation_string":"Translational Imaging in Neurology (ThINK) Basel, Department of Medicine and Biomedical Engineering, University Hospital Basel and University of Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I2802542264","https://openalex.org/I1850255"]},{"raw_affiliation_string":"Multiple Sclerosis Center, Department of Neurology, University Hospital Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I2802542264"]},{"raw_affiliation_string":"Research Center for Clinical Neuroimmunology and Neuroscience Basel (RC2NB), University Hospital Basel and University of Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I2802542264","https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Weigel, Matthias","orcid":"https://orcid.org/0000-0002-4910-1414"},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]},{"id":"https://openalex.org/I2802542264","display_name":"University Hospital of Basel","ror":"https://ror.org/04k51q396","country_code":"CH","type":"healthcare","lineage":["https://openalex.org/I2802542264"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Weigel, Matthias","raw_affiliation_strings":["Translational Imaging in Neurology (ThINK) Basel, Department of Medicine and Biomedical Engineering, University Hospital Basel and University of Basel, Basel, Switzerland","Multiple Sclerosis Center, Department of Neurology, University Hospital Basel, Basel, Switzerland","Research Center for Clinical Neuroimmunology and Neuroscience Basel (RC2NB), University Hospital Basel and University of Basel, Basel, Switzerland"],"raw_orcid":"https://orcid.org/0000-0002-4910-1414","affiliations":[{"raw_affiliation_string":"Translational Imaging in Neurology (ThINK) Basel, Department of Medicine and Biomedical Engineering, University Hospital Basel and University of Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I2802542264","https://openalex.org/I1850255"]},{"raw_affiliation_string":"Multiple Sclerosis Center, Department of Neurology, University Hospital Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I2802542264"]},{"raw_affiliation_string":"Research Center for Clinical Neuroimmunology and Neuroscience Basel (RC2NB), University Hospital Basel and University of Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I2802542264","https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Chen, Xinjie","orcid":null},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]},{"id":"https://openalex.org/I2802542264","display_name":"University Hospital of Basel","ror":"https://ror.org/04k51q396","country_code":"CH","type":"healthcare","lineage":["https://openalex.org/I2802542264"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Chen, Xinjie","raw_affiliation_strings":["Translational Imaging in Neurology (ThINK) Basel, Department of Medicine and Biomedical Engineering, University Hospital Basel and University of Basel, Basel, Switzerland","Multiple Sclerosis Center, Department of Neurology, University Hospital Basel, Basel, Switzerland","Research Center for Clinical Neuroimmunology and Neuroscience Basel (RC2NB), University Hospital Basel and University of Basel, Basel, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Translational Imaging in Neurology (ThINK) Basel, Department of Medicine and Biomedical Engineering, University Hospital Basel and University of Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I2802542264","https://openalex.org/I1850255"]},{"raw_affiliation_string":"Multiple Sclerosis Center, Department of Neurology, University Hospital Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I2802542264"]},{"raw_affiliation_string":"Research Center for Clinical Neuroimmunology and Neuroscience Basel (RC2NB), University Hospital Basel and University of Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I2802542264","https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Beck, Erin S.","orcid":null},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Beck, Erin S.","raw_affiliation_strings":["Department of Neurology, Icahn School of Medicine at Mount Sinai, New York City, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurology, Icahn School of Medicine at Mount Sinai, New York City, USA","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Tsagkas, Charidimos","orcid":"https://orcid.org/0000-0002-2586-6316"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210110767","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210110767"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tsagkas, Charidimos","raw_affiliation_strings":["Translational Neuroradiology Section, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, USA"],"raw_orcid":"https://orcid.org/0000-0002-2586-6316","affiliations":[{"raw_affiliation_string":"Translational Neuroradiology Section, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, USA","institution_ids":["https://openalex.org/I4210110767","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Reich, Daniel S.","orcid":"https://orcid.org/0000-0002-2628-4334"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210110767","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210110767"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Reich, Daniel S.","raw_affiliation_strings":["Translational Neuroradiology Section, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, USA"],"raw_orcid":"https://orcid.org/0000-0002-2628-4334","affiliations":[{"raw_affiliation_string":"Translational Neuroradiology Section, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, USA","institution_ids":["https://openalex.org/I4210110767","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Vanden Bulcke, Colin","orcid":"https://orcid.org/0000-0002-2210-1625"},"institutions":[{"id":"https://openalex.org/I95674353","display_name":"UCLouvain","ror":"https://ror.org/02495e989","country_code":"BE","type":"education","lineage":["https://openalex.org/I95674353"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Vanden Bulcke, Colin","raw_affiliation_strings":["Neuroinflammation Imaging Lab (NIL), Universit\u00e9 catholique de Louvain, Brussels, Belgium"],"raw_orcid":"https://orcid.org/0000-0002-2210-1625","affiliations":[{"raw_affiliation_string":"Neuroinflammation Imaging Lab (NIL), Universit\u00e9 catholique de Louvain, Brussels, Belgium","institution_ids":["https://openalex.org/I95674353"]}]},{"author_position":"middle","author":{"id":null,"display_name":"St\u00f6lting, Anna","orcid":"https://orcid.org/0000-0003-0880-0267"},"institutions":[{"id":"https://openalex.org/I95674353","display_name":"UCLouvain","ror":"https://ror.org/02495e989","country_code":"BE","type":"education","lineage":["https://openalex.org/I95674353"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"St\u00f6lting, Anna","raw_affiliation_strings":["Neuroinflammation Imaging Lab (NIL), Universit\u00e9 catholique de Louvain, Brussels, Belgium"],"raw_orcid":"https://orcid.org/0000-0003-0880-0267","affiliations":[{"raw_affiliation_string":"Neuroinflammation Imaging Lab (NIL), Universit\u00e9 catholique de Louvain, Brussels, Belgium","institution_ids":["https://openalex.org/I95674353"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Borrelli, Serena","orcid":"https://orcid.org/0000-0002-3186-1562"},"institutions":[{"id":"https://openalex.org/I95674353","display_name":"UCLouvain","ror":"https://ror.org/02495e989","country_code":"BE","type":"education","lineage":["https://openalex.org/I95674353"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Borrelli, Serena","raw_affiliation_strings":["Neuroinflammation Imaging Lab (NIL), Universit\u00e9 catholique de Louvain, Brussels, Belgium"],"raw_orcid":"https://orcid.org/0000-0002-3186-1562","affiliations":[{"raw_affiliation_string":"Neuroinflammation Imaging Lab (NIL), Universit\u00e9 catholique de Louvain, Brussels, Belgium","institution_ids":["https://openalex.org/I95674353"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Maggi, Pietro","orcid":"https://orcid.org/0000-0003-1697-5585"},"institutions":[{"id":"https://openalex.org/I95674353","display_name":"UCLouvain","ror":"https://ror.org/02495e989","country_code":"BE","type":"education","lineage":["https://openalex.org/I95674353"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Maggi, Pietro","raw_affiliation_strings":["Neuroinflammation Imaging Lab (NIL), Universit\u00e9 catholique de Louvain, Brussels, Belgium"],"raw_orcid":"https://orcid.org/0000-0003-1697-5585","affiliations":[{"raw_affiliation_string":"Neuroinflammation Imaging Lab (NIL), Universit\u00e9 catholique de Louvain, Brussels, Belgium","institution_ids":["https://openalex.org/I95674353"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Depeursinge, Adrien","orcid":"https://orcid.org/0000-0002-2362-0304"},"institutions":[{"id":"https://openalex.org/I4210129267","display_name":"HES-SO Valais-Wallis","ror":"https://ror.org/03r5zec51","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891","https://openalex.org/I4210129267"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Depeursinge, Adrien","raw_affiliation_strings":["MedGIFT, Institute of Informatics, School of Management, HES\u2013SO Valais\u2013Wallis University of Applied Sciences and Arts Western Switzerland, Sierre, Switzerland"],"raw_orcid":"https://orcid.org/0000-0002-2362-0304","affiliations":[{"raw_affiliation_string":"MedGIFT, Institute of Informatics, School of Management, HES\u2013SO Valais\u2013Wallis University of Applied Sciences and Arts Western Switzerland, Sierre, Switzerland","institution_ids":["https://openalex.org/I4210129267"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Granziera, Cristina","orcid":"https://orcid.org/0000-0002-4917-8761"},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]},{"id":"https://openalex.org/I2802542264","display_name":"University Hospital of Basel","ror":"https://ror.org/04k51q396","country_code":"CH","type":"healthcare","lineage":["https://openalex.org/I2802542264"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Granziera, Cristina","raw_affiliation_strings":["Translational Imaging in Neurology (ThINK) Basel, Department of Medicine and Biomedical Engineering, University Hospital Basel and University of Basel, Basel, Switzerland","Multiple Sclerosis Center, Department of Neurology, University Hospital Basel, Basel, Switzerland","Research Center for Clinical Neuroimmunology and Neuroscience Basel (RC2NB), University Hospital Basel and University of Basel, Basel, Switzerland"],"raw_orcid":"https://orcid.org/0000-0002-4917-8761","affiliations":[{"raw_affiliation_string":"Translational Imaging in Neurology (ThINK) Basel, Department of Medicine and Biomedical Engineering, University Hospital Basel and University of Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I2802542264","https://openalex.org/I1850255"]},{"raw_affiliation_string":"Multiple Sclerosis Center, Department of Neurology, University Hospital Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I2802542264"]},{"raw_affiliation_string":"Research Center for Clinical Neuroimmunology and Neuroscience Basel (RC2NB), University Hospital Basel and University of Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I2802542264","https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":null,"display_name":"M\u00fcller, Henning","orcid":"https://orcid.org/0000-0001-6800-9878"},"institutions":[{"id":"https://openalex.org/I114457229","display_name":"University of Geneva","ror":"https://ror.org/01swzsf04","country_code":"CH","type":"education","lineage":["https://openalex.org/I114457229"]},{"id":"https://openalex.org/I4210129267","display_name":"HES-SO Valais-Wallis","ror":"https://ror.org/03r5zec51","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891","https://openalex.org/I4210129267"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"M\u00fcller, Henning","raw_affiliation_strings":["MedGIFT, Institute of Informatics, School of Management, HES\u2013SO Valais\u2013Wallis University of Applied Sciences and Arts Western Switzerland, Sierre, Switzerland","Department of Radiology and Medical Informatics, University of Geneva, Geneva, Switzerland"],"raw_orcid":"https://orcid.org/0000-0001-6800-9878","affiliations":[{"raw_affiliation_string":"MedGIFT, Institute of Informatics, School of Management, HES\u2013SO Valais\u2013Wallis University of Applied Sciences and Arts Western Switzerland, Sierre, Switzerland","institution_ids":["https://openalex.org/I4210129267"]},{"raw_affiliation_string":"Department of Radiology and Medical Informatics, University of Geneva, Geneva, Switzerland","institution_ids":["https://openalex.org/I114457229"]}]},{"author_position":"middle","author":{"id":null,"display_name":"M. Gordaliza, Pedro","orcid":"https://orcid.org/0000-0001-5305-3104"},"institutions":[{"id":"https://openalex.org/I4210133377","display_name":"Centre d'Imagerie BioMedicale","ror":"https://ror.org/03fw2bn12","country_code":"CH","type":"facility","lineage":["https://openalex.org/I4210133377"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"M. Gordaliza, Pedro","raw_affiliation_strings":["CIBM Center for Biomedical Imaging, Lausanne, Switzerland","Radiology Department, Lausanne University Hospital (CHUV), Lausanne, Switzerland","Faculty of Biology and Medicine, University of Lausanne (UNIL), Lausanne, Switzerland"],"raw_orcid":"https://orcid.org/0000-0001-5305-3104","affiliations":[{"raw_affiliation_string":"CIBM Center for Biomedical Imaging, Lausanne, Switzerland","institution_ids":["https://openalex.org/I4210133377"]},{"raw_affiliation_string":"Radiology Department, Lausanne University Hospital (CHUV), Lausanne, Switzerland","institution_ids":[]},{"raw_affiliation_string":"Faculty of Biology and Medicine, University of Lausanne (UNIL), Lausanne, Switzerland","institution_ids":["https://openalex.org/I97565354"]}]},{"author_position":"last","author":{"id":null,"display_name":"Bach Cuadra, Meritxell","orcid":"https://orcid.org/0000-0003-2730-4285"},"institutions":[{"id":"https://openalex.org/I4210133377","display_name":"Centre d'Imagerie BioMedicale","ror":"https://ror.org/03fw2bn12","country_code":"CH","type":"facility","lineage":["https://openalex.org/I4210133377"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Bach Cuadra, Meritxell","raw_affiliation_strings":["CIBM Center for Biomedical Imaging, Lausanne, Switzerland","Radiology Department, Lausanne University Hospital (CHUV), Lausanne, Switzerland","Faculty of Biology and Medicine, University of Lausanne (UNIL), Lausanne, Switzerland"],"raw_orcid":"https://orcid.org/0000-0003-2730-4285","affiliations":[{"raw_affiliation_string":"CIBM Center for Biomedical Imaging, Lausanne, Switzerland","institution_ids":["https://openalex.org/I4210133377"]},{"raw_affiliation_string":"Radiology Department, Lausanne University Hospital (CHUV), Lausanne, Switzerland","institution_ids":[]},{"raw_affiliation_string":"Faculty of Biology and Medicine, University of Lausanne (UNIL), Lausanne, Switzerland","institution_ids":["https://openalex.org/I97565354"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":18,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I4210129267","https://openalex.org/I4210133377","https://openalex.org/I97565354"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.3393999934196472,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.3393999934196472,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.12540000677108765,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13980","display_name":"Alexander von Humboldt Studies","score":0.029999999329447746,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.7587000131607056},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6121000051498413},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.534500002861023},{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.4058000147342682},{"id":"https://openalex.org/keywords/lesion","display_name":"Lesion","score":0.383899986743927},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.38019999861717224}],"concepts":[{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.7587000131607056},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6288999915122986},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6121000051498413},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.534500002861023},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.5282999873161316},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4498000144958496},{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.4058000147342682},{"id":"https://openalex.org/C2781156865","wikidata":"https://www.wikidata.org/wiki/Q827023","display_name":"Lesion","level":2,"score":0.383899986743927},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3817000091075897},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.38019999861717224},{"id":"https://openalex.org/C143409427","wikidata":"https://www.wikidata.org/wiki/Q161238","display_name":"Magnetic resonance imaging","level":2,"score":0.3743000030517578},{"id":"https://openalex.org/C19527891","wikidata":"https://www.wikidata.org/wiki/Q1120908","display_name":"Medical physics","level":1,"score":0.36480000615119934},{"id":"https://openalex.org/C58693492","wikidata":"https://www.wikidata.org/wiki/Q551875","display_name":"Neuroimaging","level":2,"score":0.3366999924182892},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.3061000108718872},{"id":"https://openalex.org/C31601959","wikidata":"https://www.wikidata.org/wiki/Q931309","display_name":"Medical imaging","level":2,"score":0.2906000018119812},{"id":"https://openalex.org/C2780226545","wikidata":"https://www.wikidata.org/wiki/Q6888030","display_name":"Modality (human\u2013computer interaction)","level":2,"score":0.2825999855995178},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.2825999855995178},{"id":"https://openalex.org/C146849305","wikidata":"https://www.wikidata.org/wiki/Q370766","display_name":"Ground truth","level":2,"score":0.2709999978542328},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.2517000138759613}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.17251809","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17251809","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.5281/zenodo.17251809","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17251809","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"This":[0,190],"repository":[1,221],"contains":[2],":":[3],"Complete":[4,145],"research":[5,25,226],"code":[6,26,212],"for":[7,44,127,154,301,331],"analysis":[8,153],"and":[9,56,78,113,115,133,142,196,223,229,293,326],"post-hoc":[10],"experiments":[11],"related":[12,27],"to":[13,28,75],"multi-centric":[14],"cortical":[15,45,128,171],"lesion":[16,46,129,140,172],"segmentation":[17,130],"models":[18],"in":[19,48,204,237],"Multiple":[20,205,238],"Sclerosis":[21],"MRI":[22,166,202,235],"The":[23],"complete":[24],"the":[29,214,224],"ArXiV:":[30],"arXiv:2507.12092":[31],"Research":[32],"Overview:This":[33],"work":[34,191],"presents":[35],"a":[36],"comprehensive":[37],"benchmarking":[38],"study":[39],"of":[40,80,109,117],"deep":[41,123],"learning":[42,124],"approaches":[43],"detection":[47],"multiple":[49],"sclerosis,":[50],"with":[51,148,179],"focus":[52],"on":[53],"multi-site":[54],"generalization":[55],"model":[57,155,185],"explainability.":[58],"Cortical":[59,200,233],"lesions":[60],"are":[61],"valuable":[62],"biomarkers":[63],"offering":[64],"high":[65],"diagnostic":[66],"specificity,":[67],"but":[68],"their":[69],"clinical":[70],"integration":[71,150],"remains":[72],"limited":[73],"due":[74],"imaging":[76],"challenges":[77],"lack":[79],"standardized":[81],"automated":[82],"methods.":[83],"Key":[84],"Features:":[85],"Multi-site":[86,176],"validation":[87,132],"across":[88],"four":[89],"major":[90],"medical":[91],"centers:":[92],"University":[93,100,116],"Hospital":[94,101],"Basel":[95],"(INsIDER":[96],"dataset,":[97,105,120],"3T),":[98,106],"Lausanne":[99],"-":[102],"CHUV":[103],"(Advanced":[104],"National":[107],"Institutes":[108],"Health":[110],"(NIH,":[111],"3T":[112],"7T),":[114],"Louvain":[118],"(UCLouvain":[119],"3T)":[121],"nnU-Net-based\u00b9":[122],"pipeline":[125,147],"optimized":[126],"Cross-domain":[131],"performance":[134],"explanation":[135],"framework":[136],"Stratified":[137],"evaluation":[138],"considering":[139],"characteristics":[141],"site":[143],"diversity":[144],"preprocessing":[146],"SynthStrip\u00b2":[149],"Latent":[151],"space":[152],"interpretability":[156],"Model":[157],"Specifications:":[158],"Architecture:":[159],"nnU-Net":[160],"3D":[161],"full":[162],"resolution":[163],"Input:":[164],"T1-weighted":[165],"(MP2RAGE/MPRAGE":[167],"sequences)":[168],"Output:":[169],"Binary":[170],"probability":[173],"maps":[174],"Training:":[175],"MS":[177],"cohort":[178],"stratified":[180],"cross-validation":[181],"Ready-to-Use":[182],"Docker":[183],"Container:Pre-trained":[184],"available":[186],"at:":[187],"dockerhub":[188],"Citation:":[189],"is":[192],"described":[193],"in:":[194],"\"Benchmarking":[195,228],"Explaining":[197,230],"Deep":[198,231,302],"Learning":[199,232],"Lesion":[201,234],"Segmentation":[203,236],"Sclerosis\"":[206],"(arXiv:2507.12092,":[207,279],"2025).":[208,280],"When":[209],"using":[210],"this":[211,219],"or":[213],"Docker,":[215],"please":[216],"cite":[217],"both":[218],"software":[220],"(https://doi.org/10.5281/zenodo.15911797)":[222],"associated":[225],"paper":[227],"Sclerosis\",":[239],"N.":[240],"Molchanova,":[241],"A.":[242,261,267],"Cagol,":[243],"M.":[244,248,274,276],"Ocampo-Pineda,":[245],"P-J":[246],"Lu,":[247],"Weigel,":[249],"X.":[250],"Chen,":[251],"E.":[252],"Beck,":[253],"C.":[254,258,269],"Tsagkas,":[255],"D.":[256],"Reich,":[257],"Vanden":[259],"Bulcke,":[260],"Stolting,":[262],"S.":[263,319],"Borrelli,":[264],"P.":[265,273],"Maggi,":[266],"Depeursinge,":[268],"Granziera,":[270],"H.":[271,295],"Mueller,":[272],"Gordaliza,":[275],"Bach":[277],"Cuadra":[278],"References:":[281],"[1]":[282],"Isensee,":[283],"Fabian,":[284],"Paul":[285],"F.":[286],"Jaeger,":[287],"Simon":[288],"A.A.":[289],"Kohl,":[290],"Jens":[291],"Petersen,":[292],"Klaus":[294],"Maier-Hein.":[296],"\u201cnnU-Net:":[297],"A":[298],"Self-Configuring":[299],"Method":[300],"Learning-Based":[303],"Biomedical":[304],"Image":[305],"Segmentation.\u201d":[306],"Nature":[307],"Methods":[308],"18,":[309],"no.":[310],"2":[311],"(2021):":[312],"203\u201311.":[313],"https://doi.org/10.1038/s41592-020-01008-z.":[314],"[2]":[315],"Hoopes,":[316],"Andrew,":[317],"Jocelyn":[318],"Mora,":[320],"Adrian":[321],"V.":[322],"Dalca,":[323],"Bruce":[324],"Fischl,":[325],"Malte":[327],"Hoffmann.":[328],"\u201cSynthStrip:":[329],"Skull-Stripping":[330],"Any":[332],"Brain":[333],"Image.\u201d":[334],"NeuroImage":[335],"260":[336],"(October":[337],"2022):":[338],"119474.":[339],"https://doi.org/10.1016/j.neuroimage.2022.119474.":[340]},"counts_by_year":[],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2025-10-10T00:00:00"}