{"id":"https://openalex.org/W7082967174","doi":"https://doi.org/10.5281/zenodo.17185765","title":"HALFpipe/HALFpipe: 1.3.0","display_name":"HALFpipe/HALFpipe: 1.3.0","publication_year":2025,"publication_date":"2025-09-23","ids":{"openalex":"https://openalex.org/W7082967174","doi":"https://doi.org/10.5281/zenodo.17185765"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.17185765","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17185765","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"type":"other","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.17185765","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Waller, Lea","orcid":"https://orcid.org/0000-0002-3239-6957"},"institutions":[{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Waller, Lea","raw_affiliation_strings":["Charit\u00e9 \u2013 Universit\u00e4tsmedizin Berlin, Germany"],"raw_orcid":"https://orcid.org/0000-0002-3239-6957","affiliations":[{"raw_affiliation_string":"Charit\u00e9 \u2013 Universit\u00e4tsmedizin Berlin, Germany","institution_ids":["https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Erk, Susanne","orcid":"https://orcid.org/0000-0003-0961-3543"},"institutions":[{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Erk, Susanne","raw_affiliation_strings":["Charit\u00e9 \u2013 Universit\u00e4tsmedizin Berlin, Germany"],"raw_orcid":"https://orcid.org/0000-0003-0961-3543","affiliations":[{"raw_affiliation_string":"Charit\u00e9 \u2013 Universit\u00e4tsmedizin Berlin, Germany","institution_ids":["https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Pozzi, Elena","orcid":"https://orcid.org/0000-0001-8360-5571"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Pozzi, Elena","raw_affiliation_strings":["University of Melbourne, Melbourne, Australia"],"raw_orcid":"https://orcid.org/0000-0001-8360-5571","affiliations":[{"raw_affiliation_string":"University of Melbourne, Melbourne, Australia","institution_ids":["https://openalex.org/I165779595"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Toenders, Yara J.","orcid":"https://orcid.org/0000-0002-4117-1143"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Toenders, Yara J.","raw_affiliation_strings":["University of Melbourne, Melbourne, Australia"],"raw_orcid":"https://orcid.org/0000-0002-4117-1143","affiliations":[{"raw_affiliation_string":"University of Melbourne, Melbourne, Australia","institution_ids":["https://openalex.org/I165779595"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Haswell, Courtney C.","orcid":null},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Haswell, Courtney C.","raw_affiliation_strings":["Duke University School of Medicine, Durham, NC, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Duke University School of Medicine, Durham, NC, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":null,"display_name":"B\u00fcttner, Marc","orcid":"https://orcid.org/0000-0001-6940-6656"},"institutions":[{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"B\u00fcttner, Marc","raw_affiliation_strings":["Charit\u00e9 \u2013 Universit\u00e4tsmedizin Berlin, Germany"],"raw_orcid":"https://orcid.org/0000-0001-6940-6656","affiliations":[{"raw_affiliation_string":"Charit\u00e9 \u2013 Universit\u00e4tsmedizin Berlin, Germany","institution_ids":["https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Thompson, Paul M.","orcid":"https://orcid.org/0000-0002-4720-8867"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thompson, Paul M.","raw_affiliation_strings":["University of Southern California, Los Angeles, CA, USA"],"raw_orcid":"https://orcid.org/0000-0002-4720-8867","affiliations":[{"raw_affiliation_string":"University of Southern California, Los Angeles, CA, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Schmaal, Lianne","orcid":"https://orcid.org/0000-0001-9822-048X"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Schmaal, Lianne","raw_affiliation_strings":["University of Melbourne, Melbourne, Australia"],"raw_orcid":"https://orcid.org/0000-0001-9822-048X","affiliations":[{"raw_affiliation_string":"University of Melbourne, Melbourne, Australia","institution_ids":["https://openalex.org/I165779595"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Morey, Rajendra A.","orcid":"https://orcid.org/0000-0002-6517-6969"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Morey, Rajendra A.","raw_affiliation_strings":["Duke University School of Medicine, Durham, NC, USA"],"raw_orcid":"https://orcid.org/0000-0002-6517-6969","affiliations":[{"raw_affiliation_string":"Duke University School of Medicine, Durham, NC, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Walter, Henrik","orcid":"https://orcid.org/0000-0002-9403-6121"},"institutions":[{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Walter, Henrik","raw_affiliation_strings":["Charit\u00e9 \u2013 Universit\u00e4tsmedizin Berlin, Germany"],"raw_orcid":"https://orcid.org/0000-0002-9403-6121","affiliations":[{"raw_affiliation_string":"Charit\u00e9 \u2013 Universit\u00e4tsmedizin Berlin, Germany","institution_ids":["https://openalex.org/I7877124"]}]},{"author_position":"last","author":{"id":null,"display_name":"Veer, Ilya M.","orcid":"https://orcid.org/0000-0002-6733-3593"},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Veer, Ilya M.","raw_affiliation_strings":["University of Amsterdam, the Netherlands"],"raw_orcid":"https://orcid.org/0000-0002-6733-3593","affiliations":[{"raw_affiliation_string":"University of Amsterdam, the Netherlands","institution_ids":["https://openalex.org/I887064364"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":11,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I7877124"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":{"id":"https://openalex.org/T12157","display_name":"Geochemistry and Geologic Mapping","score":0.40549999475479126,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12157","display_name":"Geochemistry and Geologic Mapping","score":0.40549999475479126,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13177","display_name":"Geological and Geophysical Studies","score":0.045499999076128006,"subfield":{"id":"https://openalex.org/subfields/1907","display_name":"Geology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13067","display_name":"Geological Modeling and Analysis","score":0.029100000858306885,"subfield":{"id":"https://openalex.org/subfields/1906","display_name":"Geochemistry and Petrology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.833299994468689},{"id":"https://openalex.org/keywords/spurious-relationship","display_name":"Spurious relationship","score":0.5662000179290771},{"id":"https://openalex.org/keywords/json","display_name":"JSON","score":0.5152000188827515},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4300000071525574},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.4293999969959259},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4156000018119812},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.40799999237060547},{"id":"https://openalex.org/keywords/container","display_name":"Container (type theory)","score":0.40639999508857727}],"concepts":[{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.833299994468689},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.730400025844574},{"id":"https://openalex.org/C97256817","wikidata":"https://www.wikidata.org/wiki/Q1462316","display_name":"Spurious relationship","level":2,"score":0.5662000179290771},{"id":"https://openalex.org/C2780416260","wikidata":"https://www.wikidata.org/wiki/Q2063","display_name":"JSON","level":2,"score":0.5152000188827515},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4300000071525574},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.4293999969959259},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4156000018119812},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.40799999237060547},{"id":"https://openalex.org/C2781018962","wikidata":"https://www.wikidata.org/wiki/Q5164884","display_name":"Container (type theory)","level":2,"score":0.40639999508857727},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3714999854564667},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36800000071525574},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.33230000734329224},{"id":"https://openalex.org/C162372511","wikidata":"https://www.wikidata.org/wiki/Q218341","display_name":"Checksum","level":2,"score":0.32440000772476196},{"id":"https://openalex.org/C2780615140","wikidata":"https://www.wikidata.org/wiki/Q920419","display_name":"Upgrade","level":2,"score":0.31619998812675476},{"id":"https://openalex.org/C20574231","wikidata":"https://www.wikidata.org/wiki/Q844605","display_name":"Backward compatibility","level":2,"score":0.302700012922287},{"id":"https://openalex.org/C175291020","wikidata":"https://www.wikidata.org/wiki/Q1156822","display_name":"Offset (computer science)","level":2,"score":0.3012000024318695},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.2879999876022339},{"id":"https://openalex.org/C9357733","wikidata":"https://www.wikidata.org/wiki/Q6878417","display_name":"Missing data","level":2,"score":0.28790000081062317},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.2777000069618225},{"id":"https://openalex.org/C2779751349","wikidata":"https://www.wikidata.org/wiki/Q1474480","display_name":"Scanner","level":2,"score":0.2770000100135803},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.2614000141620636}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.17185765","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17185765","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.5281/zenodo.17185765","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17185765","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"New":[0],"features":[1,68],"and":[2,55,81,99,176],"enhancements":[3],"Upgrade":[4],"to":[5,31,42,58,66,89,133,153,169],"fMRIPrep":[6,59],"25.1.1":[7],"(#746,":[8,156],"#791,":[9],"#792,":[10,157],"#797,":[11],"#806,":[12],"#819)":[13],"Add":[14,39,64,86,124],"new":[15],"terminal-based":[16],"user":[17],"interface":[18],"(#705,":[19],"#795,":[20],"#798,":[21],"#802,":[22],"#812,":[23],"#814,":[24],"#835,":[25],"#838,":[26],"#845,":[27],"#848)":[28],"Standardize":[29],"confounds":[30,36],"reduce":[32],"numerical":[33],"errors":[34],"in":[35,69,140],"regression":[37],"(#785)":[38],"unit":[40],"tests":[41],"evaluate":[43],"consistency":[44],"of":[45,97],"outputs":[46],"across":[47],"version":[48],"(#803,":[49],"#807)":[50],"Support":[51,74],"passing":[52,138],"lesion":[53],"masks":[54,57],"brain":[56],"for":[60,108,126,144,179],"preprocessing":[61],"(#809,":[62],"#844)":[63],"option":[65],"calculate":[67],"native":[70],"space":[71],"(#817,":[72],"#850)":[73],"single":[75,83],"trial":[76],"estimation":[77],"with":[78,162],"least-squares":[79,82],"all":[80],"(#830,":[84],"#834)":[85,93],"GIG-ICA":[87],"feature":[88],"support":[90],"NeuroMark":[91],"(#828,":[92],"Make":[94],"within-subject":[95],"z-scoring":[96],"ReHo":[98],"fALFF":[100],"optional":[101],"(#832)":[102,123],"Bug":[103],"fixes":[104],"Fix":[105,115,137],"loading":[106],"TotalReadoutTime":[107],"field":[109,128,145],"maps":[110,129],"from":[111],"BIDS":[112],"metadata":[113,122,135],"(#811)":[114],"spurious":[116],"warning":[117,125],"about":[118],"missing":[119,134],"slice":[120],"timing":[121],"when":[127],"are":[130],"skipped":[131],"due":[132],"(#843)":[136],"units":[139],"the":[141],"JSON":[142],"sidecar":[143],"map":[146],"files":[147],"(#846)":[148],"Maintenance":[149],"Move":[150],"container":[151],"build":[152],"conda":[154],"packages":[155],"#815,":[158],"#826)":[159],"Ensure":[160],"compatibility":[161],"newer":[163],"nipype":[164],"(#801)":[165],"With":[166],"many":[167],"thanks":[168],"@lalalavi,":[170],"@F-Tomas,":[171],"@gjheij,":[172],"@jstaph,":[173],"Charlotte":[174],"Meinke":[175],"Sarah":[177],"Wellan":[178],"contributions":[180]},"counts_by_year":[],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
