{"id":"https://openalex.org/W7082624565","doi":"https://doi.org/10.5281/zenodo.17176366","title":"DNA sequences for \"sRNA-Mediated Feedback-Based Dynamic Ribosome Binding Site Tuning for Stable Protein Output under Ribosome Availability Variations\"","display_name":"DNA sequences for \"sRNA-Mediated Feedback-Based Dynamic Ribosome Binding Site Tuning for Stable Protein Output under Ribosome Availability Variations\"","publication_year":2025,"publication_date":"2025-09-22","ids":{"openalex":"https://openalex.org/W7082624565","doi":"https://doi.org/10.5281/zenodo.17176366"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.17176366","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17176366","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.17176366","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Wan, Haiying","orcid":"https://orcid.org/0000-0003-1844-4083"},"institutions":[{"id":"https://openalex.org/I111599522","display_name":"Jiangnan University","ror":"https://ror.org/04mkzax54","country_code":"CN","type":"education","lineage":["https://openalex.org/I111599522"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wan, Haiying","raw_affiliation_strings":["Jiangnan University"],"raw_orcid":"https://orcid.org/0000-0003-1844-4083","affiliations":[{"raw_affiliation_string":"Jiangnan University","institution_ids":["https://openalex.org/I111599522"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Wang, ChenYang","orcid":"https://orcid.org/0009-0003-6529-5065"},"institutions":[{"id":"https://openalex.org/I111599522","display_name":"Jiangnan University","ror":"https://ror.org/04mkzax54","country_code":"CN","type":"education","lineage":["https://openalex.org/I111599522"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wang, ChenYang","raw_affiliation_strings":["Jiangnan University"],"raw_orcid":"https://orcid.org/0009-0003-6529-5065","affiliations":[{"raw_affiliation_string":"Jiangnan University","institution_ids":["https://openalex.org/I111599522"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Luan, Xiaoli","orcid":"https://orcid.org/0000-0002-4028-1922"},"institutions":[{"id":"https://openalex.org/I111599522","display_name":"Jiangnan University","ror":"https://ror.org/04mkzax54","country_code":"CN","type":"education","lineage":["https://openalex.org/I111599522"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Luan, Xiaoli","raw_affiliation_strings":["Jiangnan University"],"raw_orcid":"https://orcid.org/0000-0002-4028-1922","affiliations":[{"raw_affiliation_string":"Jiangnan University","institution_ids":["https://openalex.org/I111599522"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Liu, Fei","orcid":"https://orcid.org/0000-0001-7160-2605"},"institutions":[{"id":"https://openalex.org/I111599522","display_name":"Jiangnan University","ror":"https://ror.org/04mkzax54","country_code":"CN","type":"education","lineage":["https://openalex.org/I111599522"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liu, Fei","raw_affiliation_strings":["Jiangnan University"],"raw_orcid":"https://orcid.org/0000-0001-7160-2605","affiliations":[{"raw_affiliation_string":"Jiangnan University","institution_ids":["https://openalex.org/I111599522"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Ledesma-Amaro, Rodrigo","orcid":"https://orcid.org/0000-0003-2631-5898"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ledesma-Amaro, Rodrigo","raw_affiliation_strings":["Imperial College London"],"raw_orcid":"https://orcid.org/0000-0003-2631-5898","affiliations":[{"raw_affiliation_string":"Imperial College London","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"last","author":{"id":null,"display_name":"Liu, Long","orcid":"https://orcid.org/0000-0002-9679-9130"},"institutions":[{"id":"https://openalex.org/I111599522","display_name":"Jiangnan University","ror":"https://ror.org/04mkzax54","country_code":"CN","type":"education","lineage":["https://openalex.org/I111599522"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liu, Long","raw_affiliation_strings":["Jiangnan University"],"raw_orcid":"https://orcid.org/0000-0002-9679-9130","affiliations":[{"raw_affiliation_string":"Jiangnan University","institution_ids":["https://openalex.org/I111599522"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I111599522"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":{"id":"https://openalex.org/T14185","display_name":"Research, Science, and Academia","score":0.19529999792575836,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T14185","display_name":"Research, Science, and Academia","score":0.19529999792575836,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13930","display_name":"Diverse Education and Engineering Focus","score":0.08860000222921371,"subfield":{"id":"https://openalex.org/subfields/3304","display_name":"Education"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T12722","display_name":"Innovation Policy and R&D","score":0.05079999938607216,"subfield":{"id":"https://openalex.org/subfields/2002","display_name":"Economics and Econometrics"},"field":{"id":"https://openalex.org/fields/20","display_name":"Economics, Econometrics and Finance"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ribosome","display_name":"Ribosome","score":0.7170000076293945},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.5069000124931335},{"id":"https://openalex.org/keywords/translation","display_name":"Translation (biology)","score":0.44510000944137573},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.42640000581741333},{"id":"https://openalex.org/keywords/ribosomal-binding-site","display_name":"Ribosomal binding site","score":0.4162999987602234},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.3937999904155731},{"id":"https://openalex.org/keywords/dynamics","display_name":"Dynamics (music)","score":0.38100001215934753},{"id":"https://openalex.org/keywords/coding-region","display_name":"Coding region","score":0.3749000132083893}],"concepts":[{"id":"https://openalex.org/C88478588","wikidata":"https://www.wikidata.org/wiki/Q42244","display_name":"Ribosome","level":4,"score":0.7170000076293945},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5069000124931335},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4754999876022339},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.454800009727478},{"id":"https://openalex.org/C149364088","wikidata":"https://www.wikidata.org/wiki/Q185917","display_name":"Translation (biology)","level":4,"score":0.44510000944137573},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.43130001425743103},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.42640000581741333},{"id":"https://openalex.org/C114847915","wikidata":"https://www.wikidata.org/wiki/Q16948788","display_name":"Ribosomal binding site","level":5,"score":0.4162999987602234},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.3937999904155731},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.38600000739097595},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3846000134944916},{"id":"https://openalex.org/C145912823","wikidata":"https://www.wikidata.org/wiki/Q113558","display_name":"Dynamics (music)","level":2,"score":0.38100001215934753},{"id":"https://openalex.org/C91779695","wikidata":"https://www.wikidata.org/wiki/Q3780824","display_name":"Coding region","level":3,"score":0.3749000132083893},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.3458999991416931},{"id":"https://openalex.org/C96267730","wikidata":"https://www.wikidata.org/wiki/Q4647010","display_name":"A-site","level":3,"score":0.3434999883174896},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.33869999647140503},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.3353999853134155},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.3244999945163727},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.3149999976158142},{"id":"https://openalex.org/C142613039","wikidata":"https://www.wikidata.org/wiki/Q272983","display_name":"Green fluorescent protein","level":3,"score":0.29989999532699585},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.29159998893737793},{"id":"https://openalex.org/C191961535","wikidata":"https://www.wikidata.org/wiki/Q2360205","display_name":"A-DNA","level":3,"score":0.27720001339912415},{"id":"https://openalex.org/C203479927","wikidata":"https://www.wikidata.org/wiki/Q5165939","display_name":"Controller (irrigation)","level":2,"score":0.2655999958515167},{"id":"https://openalex.org/C3675279","wikidata":"https://www.wikidata.org/wiki/Q211935","display_name":"Protein biosynthesis","level":2,"score":0.26510000228881836},{"id":"https://openalex.org/C153911025","wikidata":"https://www.wikidata.org/wiki/Q7202","display_name":"Molecular biology","level":1,"score":0.2599000036716461},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.25760000944137573},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2522999942302704},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.25049999356269836}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.17176366","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17176366","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.17176366","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17176366","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"dataset"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"To":[0],"develop":[1],"the":[2,6,15,24,29,35,38,42,46,49,53,65,70,74],"mathematical":[3,71],"model":[4],"for":[5,68],"biological":[7],"system":[8],"illustrated":[9],"in":[10],"Figure":[11],"2(c),":[12],"which":[13],"comprises":[14],"sRNA-A-based":[16],"feedback":[17],"controller":[18],"and":[19,52,84],"its":[20],"target":[21],"GFP":[22,47,59],"gene,":[23,48,51],"complete":[25],"DNA":[26],"sequences":[27,62],"of":[28],"following":[30],"key":[31],"components":[32],"are":[33],"provided:":[34],"pECF32":[36],"promoter,":[37],"sRNA-A":[39,43],"coding":[40],"sequence,":[41,45],"targeting":[44],"ECF32":[50],"ribosome":[54],"binding":[55],"site":[56],"(RBS)":[57],"regulating":[58],"translation.":[60],"These":[61],"serve":[63],"as":[64],"fundamental":[66],"basis":[67],"constructing":[69],"framework,":[72],"including":[73],"ordinary":[75],"differential":[76],"equations":[77],"used":[78],"to":[79],"simulate":[80],"gene":[81],"expression":[82],"dynamics":[83],"subsequent":[85],"quantitative":[86],"analysis.":[87]},"counts_by_year":[],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2025-10-10T00:00:00"}
